HHSEARCH alignment of GI: 254780956 and SCOP domain: d1seja2

Alignment
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Cryptosporidium hominis [TaxId: 237895]}
Probab=100.00  E-value=0  Score=733.71  Aligned_cols=263  Identities=49%  Similarity=0.892  Sum_probs=256.5

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      +||++|+++||++|+.++||||++|+|+||+++||||++|||||||||+|||++++||+|||+|+||+++|++.+++||+
T Consensus         6 ~qYl~ll~~IL~~G~~~~dRTG~~t~sifg~~~rfDl~~gFPllTtKk~~~K~ii~EllWfl~G~tn~~~L~~~~v~iW~   85 (289)
T d1seja2           6 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWS   85 (289)
T ss_dssp             HHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHHTCCBHHHHHHTTCCTTT
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf             99999999999819887899988669981334898377898556752156788999999998616125677740444221


Q ss_pred             HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf             65421------------0013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r   82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM  141 (264)
Q Consensus        82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~  141 (264)
                      +|+++            +|++||+||+|||+|.        +|.++++|||++||++||+||+|||+|+++|||+++++|
T Consensus        86 ~~~~~~~~~~~~~~~~~~gdlG~~YG~qwr~~~~~~~~~~~~y~~~~~DQl~~vi~~Lk~nP~sRR~ii~~wnp~~~~~~  165 (289)
T d1seja2          86 GNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQM  165 (289)
T ss_dssp             GGGSHHHHHHTTCTTSCTTBCCSCTTHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGGS
T ss_pred             CCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCC
T ss_conf             34321234413555200266563201222312565566664567877279999999985196340057565578787415


Q ss_pred             CCCCCCCCEEEEECC-CEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHH
Q ss_conf             421135402466768-8059999726244022202167999999999997622421111352273021003689999983
Q gi|254780956|r  142 ALPPCHCLFQFYVDN-GKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL  220 (264)
Q Consensus       142 ~lpPC~~~~qf~v~~-g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql  220 (264)
                      +|||||+.+||+|.+ |+|+|++||||+|++||+||||++||+|++|||++||++||+|+|++||+|||+||+|++++||
T Consensus       166 ~l~PCh~~~~f~v~~~~~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~~~~gd~HIY~nh~~~vkeqL  245 (289)
T d1seja2         166 ALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL  245 (289)
T ss_dssp             SSCCSEEEEEEEECTTSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred             CCCCCCEEEEEEECCCCEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECEEEEHHHHHHHHHHHH
T ss_conf             70133224578961784289999823620776415789999999999998719887518999530785185899999996


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             36987687799648868711262033799768768887875569
Q gi|254780956|r  221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       221 ~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      +|+|+++|+|+|++++++|+||++|||+|+||+|||+|||||||
T Consensus       246 ~R~p~~~P~l~i~~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~maV  289 (289)
T d1seja2         246 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV  289 (289)
T ss_dssp             TSCCCCCCEEEESSCCSSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCEEC
T ss_conf             68998999789679978411699779799898789986502059


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain
species: Cryptosporidium hominis [TaxId: 237895]