HHSEARCH alignment of GI: 254780956 and SCOP domain: d2g8oa1

Alignment
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=738.97  Aligned_cols=264  Identities=58%  Similarity=1.110  Sum_probs=262.6

Q ss_pred             CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH
Q ss_conf             95799999999863926037998534777612046442369810464202268899999998536664688864003213
Q gi|254780956|r    1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW   80 (264)
Q Consensus         1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW   80 (264)
                      ||||++|+++||++|+.++||||++|+|+||+++|||+++|||+|||||++||++++|++|||+|+||+++|++++++||
T Consensus         1 m~qYl~ll~~Il~~G~~~~dRtG~~t~sifg~~~~~Dl~~gfPllTtKk~~~k~~~~EllWfl~G~t~~~~l~~~~~~iW   80 (264)
T d2g8oa1           1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW   80 (264)
T ss_dssp             CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCHH
T ss_conf             96899999999981988238998508999155489861018971330355431037999999836726566564065410


Q ss_pred             HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEE
Q ss_conf             56542100138766201000367753268899999999980885236777516988832024211354024667688059
Q gi|254780956|r   81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLS  160 (264)
Q Consensus        81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~  160 (264)
                      |+|++++|++|++||+|||+|+.++|+++||+++||++||+||+|||+|+++|||.++++|+|||||.++||+|++|+|+
T Consensus        81 d~~~~~~G~lg~~YG~q~r~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~v~~~wnp~~~~~~~l~PC~~~~qf~v~~~~L~  160 (264)
T d2g8oa1          81 DEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS  160 (264)
T ss_dssp             GGGCCTTSBCCSCHHHHHHHEEETTTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEE
T ss_pred             HHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCEEEEEEECCCCCE
T ss_conf             12212354425430010353367677431589999998634744405899714455554136440333369998189837


Q ss_pred             EEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf             99972624402220216799999999999762242111135227302100368999998336987687799648868711
Q gi|254780956|r  161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL  240 (264)
Q Consensus       161 ~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~  240 (264)
                      |+++|||||++||+|||+++|++|+++||+.||++||+|+|++||+|||+||+|++++||+|+|+++|+|+|++++++|+
T Consensus       161 ~~~~qRS~D~~lG~p~ni~~~~~L~~~iA~~~gl~~G~~~~~~gd~HIY~nh~e~v~~ql~R~p~~~P~l~i~~~~~~i~  240 (264)
T d2g8oa1         161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF  240 (264)
T ss_dssp             EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECCCCSSTT
T ss_pred             EEEEECHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
T ss_conf             99997400345447768999999999998760567607999942368846279999998478998998678689988502


Q ss_pred             CCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             262033799768768887875569
Q gi|254780956|r  241 SFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       241 d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+++|||+|+||+|||+|||||||
T Consensus       241 ~~~~~Df~l~~Y~~hp~Ik~~maV  264 (264)
T d2g8oa1         241 DYRFEDFEIEGYDPHPGIKAPVAI  264 (264)
T ss_dssp             CCCGGGEEEESCCCCCCCCCCCCC
T ss_pred             CCCHHHEEEECCCCCCCCCCCEEC
T ss_conf             597138799798789987601169


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Thymidylate synthase
species: Escherichia coli [TaxId: 562]