RPSBLAST alignment of GI: 254780956 and protein with PDBid: 3ik0
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase, methyltransferase, nucleot biosynthesis; HET: 7C1 UMP; 2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 1tdb_A* 1tda_A* ... Length = 316
Score = 341 bits (876), Expect = 9e-95
Identities = 144/314 (45%), Positives = 186/314 (59%), Gaps = 50/314 (15%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
YLDL + V+ G + DRT GT S FG+QMRFDLSKGFPLLTTKKV + + ELL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 61 WFLRGDSNVSYLHRHGVSIWD--------------------------------------- 81
WFL GD+N+ +L +H IWD
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 82 -----------EWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIV 130
+A K G+LG +YG QWR+W G+ IDQ+ +++ ++ PYSRR IV
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIV 182
Query: 131 SAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLAS 190
SAWN + MALPPCH L+QFYV++GKLS QLYQRS D+FLG+PFNIASY+LLT ++A
Sbjct: 183 SAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAH 242
Query: 191 VIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLR 250
G + GEFIHT GD HLY NH +Q QLSR+PR P + +NP+ D+ F +D L
Sbjct: 243 ECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLL 302
Query: 251 SYEPHAAILAKVSV 264
+Y+P+ AI A V+V
Sbjct: 303 NYDPYPAIKAPVAV 316