RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780956|ref|YP_003065369.1| thymidylate synthase [Candidatus Liberibacter asiaticus str. psy62] (264 letters) >d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]} Length = 264 Score = 301 bits (772), Expect = 4e-83 Identities = 153/264 (57%), Positives = 201/264 (76%) Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60 M QYL+L++ V+ G+ + DRTG GT S FG+QMRF+L GFPL+TTK+ H +S++HELL Sbjct: 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60 Query: 61 WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120 WFL+GD+N++YLH + V+IWDEWAD++G+LGP+YG QWR+WP DG IDQI++++ L+ Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120 Query: 121 ADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIAS 180 DP SRR IVSAWNV +DKMAL PCH FQFYV +GKLSCQLYQRS DVFLG+PFNIAS Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180 Query: 181 YSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240 Y+LL M+A + G+F+ T GD HLY+NH +Q LQLSR PR LP++II + Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240 Query: 241 SFRYEDFTLRSYEPHAAILAKVSV 264 +R+EDF + Y+PH I A V++ Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264 >d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]} Length = 316 Score = 298 bits (765), Expect = 2e-82 Identities = 143/314 (45%), Positives = 185/314 (58%), Gaps = 50/314 (15%) Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60 YLDL + V+ G + DRT GT S FG+QMRFDLSKGFPLLTTKKV + + ELL Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62 Query: 61 WFLRGDSNVSYLHRHGVSIW---------------------------------------- 80 WFL GD+N+ +L +H IW Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122 Query: 81 ----------DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIV 130 D +A K G+LG +YG QWR+W G+ IDQ+ +++ ++ PYSR IV Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRALIV 182 Query: 131 SAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLAS 190 SAWN + MALPPCH L+QFYV++GKLS QLYQRS D+FLG+PFNIASY+LLT ++A Sbjct: 183 SAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAH 242 Query: 191 VIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLR 250 G + GEFIHT GD HLY NH +Q QLSR+PR P + +NP+ D+ F +D L Sbjct: 243 ECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLL 302 Query: 251 SYEPHAAILAKVSV 264 +Y+P+ AI A V+V Sbjct: 303 NYDPYPAIKAPVAV 316 >d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]} Length = 295 Score = 287 bits (735), Expect = 7e-79 Identities = 131/291 (45%), Positives = 182/291 (62%), Gaps = 28/291 (9%) Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDL-SKGFPLLTTKKVHWKSVVHEL 59 QYL+L++++I G DR DRTG GT S F ++F L +K FPLLTTK+V + V+ EL Sbjct: 5 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEEL 64 Query: 60 LWFLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRSWP----- 102 LWF+RG+++ L + IWD ++ G+LGPIYG QWR + Sbjct: 65 LWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYID 124 Query: 103 ---DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYV----- 154 +Y G +DQ+++I+Q +R PY RR I+SAWN A ++KMALPPCH QFYV Sbjct: 125 CKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSN 184 Query: 155 -DNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHF 213 +LSCQLYQRS D+ LG+PFNIASY+LLT M+A V G+FIH +GD H+Y +H Sbjct: 185 NHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI 244 Query: 214 EQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 E QL+RSPR P + +N +I D+ F +DF +++Y P+ I K+S+ Sbjct: 245 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 295 >d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Cryptosporidium hominis [TaxId: 237895]} Length = 289 Score = 285 bits (731), Expect = 2e-78 Identities = 128/284 (45%), Positives = 178/284 (62%), Gaps = 21/284 (7%) Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61 QYLDLL V++ G+ R +RTG+ T S FG MRFD+ + FPLLTTKKV +S+ EL+W Sbjct: 6 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIW 65 Query: 62 FLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRSWP------- 102 F++GD+N ++L V IW K+ +LGPIYG QWR + Sbjct: 66 FIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMH 125 Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNG-KLS 160 DY G +DQ++ ++++L+ +P RRHI++AWN + + +MALPPCH L Q+YV N LS Sbjct: 126 DDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLS 185 Query: 161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220 C LYQRS D+ LG PFNIASY++LTMMLA V G++ GE +GD H+Y NH Q QL Sbjct: 186 CNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL 245 Query: 221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 SR+PR PQ+ + ++ F++ED L Y P+ I ++V Sbjct: 246 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 289 >d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Score = 276 bits (706), Expect = 2e-75 Identities = 130/283 (45%), Positives = 175/283 (61%), Gaps = 20/283 (7%) Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61 QYL ++H+++ G + DRTG GT S FG Q R+ L FPLLTTK+V WK V+ ELLW Sbjct: 6 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLW 65 Query: 62 FLRGDSNVSYLHRHGVSIWDEWADKDG------------ELGPIYGVQWRSW-------- 101 F++G +N L GV IWD +D +LGP+YG QWR + Sbjct: 66 FIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDME 125 Query: 102 PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161 DY G +DQ+ ++ +++ +P RR I+ AWN + MALPPCH L QFYV N +LSC Sbjct: 126 SDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSC 185 Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 QLYQRSGD+ LG+PFNIASY+LLT M+A + G + G+FIHTLGD H+Y NH E +QL Sbjct: 186 QLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ 245 Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 R PR P++ I + + F+ EDF + Y PH I +++V Sbjct: 246 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288 >d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 326 Score = 273 bits (699), Expect = 9e-75 Identities = 124/282 (43%), Positives = 180/282 (63%), Gaps = 20/282 (7%) Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61 +QYL+++ ++ G+ + DRTGVG S FGY M+FDLS+ FPLLTTKK+ + ++ ELLW Sbjct: 44 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 103 Query: 62 FLRGDSNVSYLHRHGVSIWDEWADK------------DGELGPIYGVQWRSWP------- 102 F+RG++N + L V IW+ + +LGPIYG QWR + Sbjct: 104 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 163 Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161 +Y+ +DQ+ +I+ ++ DP SRR ++ AWNV +D+MALPPCH L QFYV +GKLSC Sbjct: 164 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 223 Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 +YQRS D+ LG+PFNIASYS+ T M+A V Q +FIH LG+ H+YNNH + +QL+ Sbjct: 224 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 283 Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVS 263 R P P + +NP+I ++ F DFT+++Y H I ++ Sbjct: 284 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 325 >d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4 [TaxId: 10665]} Length = 286 Score = 249 bits (637), Expect = 2e-67 Identities = 120/291 (41%), Positives = 168/291 (57%), Gaps = 32/291 (10%) Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60 M QY DL++ + + G + DRTG GT + FG ++R+DL+KGFP +TTKK+ WK+ + EL+ Sbjct: 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELI 60 Query: 61 WFLRGDSNVSYL-------HRHGVSIWDEWAD--------KDGELGPIYGVQWRSWPDYD 105 WFL G +NV+ L G ++WDE + GELGPIYG QWR + Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDF---- 116 Query: 106 GNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQ 165 +DQI ++ ++ P RR IVSAWN A + MALPPCH +QF V NG L Q YQ Sbjct: 117 -GGVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRNGYLDLQWYQ 175 Query: 166 RSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPR 225 RS DVFLG+PFNIASY+ L ++A + G+ I + G+ H+Y NH EQ L R P+ Sbjct: 176 RSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235 Query: 226 TLPQMIIN------------PNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 L +++I+ + +L R +DF L +Y H I K++V Sbjct: 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286 >d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis [TaxId: 1423]} Length = 278 Score = 236 bits (602), Expect = 2e-63 Identities = 103/275 (37%), Positives = 151/275 (54%), Gaps = 13/275 (4%) Query: 2 HQYLDLLRHVIKFGSD----------RRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVH 51 QY +++ +I G D T T S QMRFD S P+LTTKKV Sbjct: 5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNS-EVPILTTKKVA 63 Query: 52 WKSVVHELLWFLRGDSN-VSYLHRHGVSIWDEWADKDGELGPIYG-VQWRSWPDYDGNVI 109 WK+ + ELLW + SN V+ L+ GV IWD+W +DG +G YG + +G + Sbjct: 64 WKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKV 123 Query: 110 DQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGD 169 DQ+ ++ L+ +P SRRHI WN +D MAL PC Q+YV +GKL ++ RS D Sbjct: 124 DQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSND 183 Query: 170 VFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQ 229 + LG PFN+ Y++L M+A V G++ GE+I +GD H+Y H + +Q+ R P+ Sbjct: 184 MALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE 243 Query: 230 MIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 + INP + D F +DF L +Y+ +L +V+V Sbjct: 244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278 >d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]} Length = 241 Score = 218 bits (557), Expect = 3e-58 Identities = 52/236 (22%), Positives = 81/236 (34%), Gaps = 22/236 (9%) Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60 + + L +K D+TGV T G D F L + + EL Sbjct: 8 VEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEYI-----QRELE 62 Query: 61 WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120 W+ V + IW + A GE+ YG S +Y Q + L Sbjct: 63 WYKSKSLFVKDIPGETPKIWQQVASSKGEINSNYGWAIWSEDNYA-----QYDMCLAELG 117 Query: 121 ADPYSRRHIVSAWN-----VALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIP 175 +P SRR I+ D M+ C Q+ + + K++ + RS DV G Sbjct: 118 QNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFR 177 Query: 176 FNIASYSLLTMMLA-------SVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSP 224 + A + L S ++ G I +G +H+Y+ HF D Sbjct: 178 NDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGE 233 >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 Score = 25.5 bits (55), Expect = 5.2 Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 2/58 (3%) Query: 44 LLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSW 101 S W D + + G W ++ DK+ E + S Sbjct: 8 ECVLDPTLSGSYHELKKWIYEEDLTL-FGVTLGSGFW-DFLDKNPEYNTSFNDAMASD 63 >d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Length = 339 Score = 24.5 bits (52), Expect = 8.8 Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 2/55 (3%) Query: 71 YLHRHGVSIWDEWADKDGELGPIYGVQW--RSWPDYDGNVIDQISSIVQSLRADP 123 GV W D G + G + + S + LR P Sbjct: 70 IADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERLRDHP 124 >d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 135 Score = 24.4 bits (53), Expect = 9.2 Identities = 8/24 (33%), Positives = 13/24 (54%) Query: 110 DQISSIVQSLRADPYSRRHIVSAW 133 + + V+S+RA+ RH AW Sbjct: 34 EAAKAFVESVRAEHPDARHHCVAW 57 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.140 0.449 Gapped Lambda K H 0.267 0.0451 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,062,049 Number of extensions: 49679 Number of successful extensions: 211 Number of sequences better than 10.0: 1 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 16 Length of query: 264 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 180 Effective length of database: 1,254,276 Effective search space: 225769680 Effective search space used: 225769680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (24.5 bits)