Query gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 123 out of 1831
Neff 7.0
Searched_HMMs 39220
Date Mon May 30 02:18:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780957.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10769 folA dihydrofolate re 100.0 0 0 385.2 20.2 159 5-170 1-159 (159)
2 pfam00186 DHFR_1 Dihydrofolate 100.0 0 0 383.2 19.5 159 5-169 1-159 (159)
3 cd00209 DHFR Dihydrofolate red 100.0 0 0 347.2 18.1 157 6-168 1-158 (158)
4 PTZ00164 bifunctional dihydrof 100.0 0 0 347.7 16.4 163 1-171 5-189 (512)
5 KOG1324 consensus 100.0 0 0 297.5 14.8 165 4-168 2-187 (190)
6 COG0262 FolA Dihydrofolate red 100.0 0 0 290.6 17.0 160 5-170 1-167 (167)
7 PRK00478 scpA segregation and 100.0 1.1E-33 2.7E-38 216.9 8.8 143 5-151 1-143 (505)
8 pfam01872 RibD_C RibD C-termin 99.2 3.4E-10 8.7E-15 79.9 13.5 148 4-151 1-190 (196)
9 PRK05625 hypothetical protein; 98.8 4.6E-07 1.2E-11 61.7 14.6 165 1-170 17-239 (239)
10 COG1985 RibD Pyrimidine reduct 97.3 0.013 3.3E-07 35.7 12.6 131 1-131 1-178 (218)
11 PRK10786 ribD bifunctional dia 97.1 0.015 3.7E-07 35.4 11.1 128 3-132 146-329 (367)
12 pfam02476 US2 US2 family. This 74.0 5.5 0.00014 20.4 4.1 38 99-136 12-53 (124)
13 TIGR00227 ribD_Cterm riboflavi 67.8 10 0.00027 18.8 4.5 128 3-130 2-199 (239)
14 TIGR02529 EutJ ethanolamine ut 66.1 2.6 6.6E-05 22.3 1.0 27 92-118 189-215 (240)
15 PRK10624 L-1,2-propanediol oxi 65.7 12 0.00029 18.5 4.3 77 38-114 4-103 (381)
16 TIGR02076 pyrH_arch uridylate 57.3 16 0.00042 17.6 4.2 62 82-146 95-173 (232)
17 TIGR01508 rib_reduct_arch diam 56.1 13 0.00033 18.3 3.1 125 4-128 1-182 (224)
18 PRK03815 murD UDP-N-acetylmura 55.6 18 0.00045 17.5 5.2 48 56-107 260-308 (401)
19 pfam02875 Mur_ligase_C Mur lig 52.2 20 0.00051 17.1 4.7 70 58-129 1-80 (87)
20 cd00318 Phosphoglycerate_kinas 51.0 19 0.00049 17.2 3.3 30 95-124 185-221 (397)
21 PRK00683 murD UDP-N-acetylmura 49.4 22 0.00056 16.9 3.6 48 56-107 275-322 (418)
22 pfam02571 CbiJ Precorrin-6x re 47.9 23 0.0006 16.7 6.2 106 29-135 53-165 (246)
23 PRK00536 speE spermidine synth 46.7 15 0.00039 17.8 2.3 48 92-139 67-118 (262)
24 PRK02705 murD UDP-N-acetylmura 46.4 25 0.00063 16.6 5.3 31 85-115 336-369 (459)
25 PRK00811 spermidine synthase; 44.3 14 0.00034 18.1 1.7 51 93-143 74-130 (283)
26 TIGR01111 mtrA tetrahydrometha 43.2 18 0.00045 17.4 2.1 28 13-40 105-135 (246)
27 PRK07459 single-stranded DNA-b 43.2 28 0.00071 16.3 5.4 69 38-107 1-74 (121)
28 COG0126 Pgk 3-phosphoglycerate 42.5 28 0.00073 16.2 3.4 30 95-124 187-223 (395)
29 PRK09799 putative selenate red 41.7 17 0.00043 17.5 1.9 10 43-52 25-34 (258)
30 PRK04690 murD UDP-N-acetylmura 41.7 29 0.00075 16.2 5.3 41 57-106 309-355 (468)
31 PRK00103 SPOUT methyltransfera 39.6 21 0.00054 17.0 2.1 36 85-120 84-120 (156)
32 TIGR00600 rad2 DNA excision re 39.5 7.6 0.00019 19.6 -0.2 50 96-145 899-988 (1127)
33 PTZ00005 phosphoglycerate kina 39.0 32 0.00082 15.9 3.5 26 99-124 209-240 (419)
34 PRK13962 bifunctional phosphog 36.6 35 0.0009 15.7 3.3 29 95-123 184-219 (653)
35 PRK10444 UMP phosphatase; Prov 34.9 38 0.00096 15.5 5.7 82 12-114 6-98 (248)
36 TIGR03312 Se_sel_red_FAD proba 34.9 25 0.00063 16.6 1.8 20 87-106 85-104 (257)
37 TIGR03385 CoA_CoA_reduc CoA-di 33.6 40 0.001 15.4 4.8 51 76-127 112-168 (427)
38 PRK00421 murC UDP-N-acetylmura 31.5 43 0.0011 15.2 6.9 65 57-130 311-393 (459)
39 KOG4842 consensus 30.8 28 0.0007 16.3 1.5 58 26-83 124-187 (278)
40 PRK02006 murD UDP-N-acetylmura 29.8 46 0.0012 15.0 5.4 48 56-107 353-400 (501)
41 TIGR02627 rhamnulo_kin rhamnul 29.4 39 0.00099 15.5 2.1 17 94-110 390-406 (460)
42 TIGR01087 murD UDP-N-acetylmur 29.3 47 0.0012 15.0 3.8 63 56-120 328-393 (476)
43 PRK13512 coenzyme A disulfide 28.6 48 0.0012 14.9 4.0 61 76-140 123-189 (438)
44 PRK09860 putative alcohol dehy 28.2 49 0.0013 14.8 3.7 73 42-114 10-105 (383)
45 pfam00465 Fe-ADH Iron-containi 27.6 50 0.0013 14.8 3.2 32 83-114 65-96 (312)
46 PRK03612 spermidine synthase; 27.6 50 0.0013 14.8 4.5 68 62-129 250-329 (516)
47 PRK01710 murD UDP-N-acetylmura 27.5 51 0.0013 14.8 5.2 24 84-107 336-359 (458)
48 TIGR00417 speE spermidine synt 27.3 37 0.00094 15.6 1.7 51 90-140 68-124 (284)
49 pfam02590 SPOUT_MTase Predicte 27.2 45 0.0011 15.1 2.1 35 85-119 84-120 (155)
50 pfam04263 TPK_catalytic Thiami 26.7 52 0.0013 14.7 2.4 25 83-107 69-93 (122)
51 KOG2520 consensus 26.5 40 0.001 15.4 1.7 25 96-120 507-531 (815)
52 COG0771 MurD UDP-N-acetylmuram 26.4 53 0.0013 14.7 3.7 12 57-68 307-318 (448)
53 TIGR02075 pyrH_bact uridylate 26.1 54 0.0014 14.6 2.8 26 86-111 30-55 (236)
54 KOG0538 consensus 25.6 55 0.0014 14.6 4.3 85 21-112 207-296 (363)
55 pfam06189 5-nucleotidase 5'-nu 25.6 34 0.00088 15.7 1.3 53 62-124 37-89 (263)
56 PRK00073 pgk phosphoglycerate 24.6 57 0.0015 14.5 4.0 29 96-124 183-218 (391)
57 PRK03803 murD UDP-N-acetylmura 24.4 58 0.0015 14.4 3.0 51 56-107 304-355 (448)
58 cd06553 ASCH_Ef3133_like ASC-1 24.4 39 0.001 15.4 1.4 57 42-98 18-87 (127)
59 pfam08538 DUF1749 Protein of u 24.3 58 0.0015 14.4 2.4 19 32-50 95-118 (303)
60 PRK10773 murF UDP-N-acetylmura 24.2 58 0.0015 14.4 3.1 22 85-106 339-360 (452)
61 TIGR01283 nifE nitrogenase MoF 24.2 58 0.0015 14.4 6.2 89 28-118 324-430 (470)
62 PRK09754 phenylpropionate diox 24.0 59 0.0015 14.4 4.4 50 77-127 122-175 (400)
63 TIGR01424 gluta_reduc_2 glutat 24.0 59 0.0015 14.4 3.0 90 41-133 121-228 (478)
64 TIGR00326 eubact_ribD riboflav 23.3 61 0.0016 14.3 2.9 115 6-122 169-343 (393)
65 pfam00162 PGK Phosphoglycerate 22.4 63 0.0016 14.2 3.8 25 100-124 190-220 (383)
66 KOG4211 consensus 22.4 64 0.0016 14.2 3.3 26 20-45 14-41 (510)
67 PRK02472 murD UDP-N-acetylmura 22.0 65 0.0016 14.2 5.3 22 85-106 333-354 (450)
68 COG1576 Uncharacterized conser 22.0 65 0.0016 14.1 2.2 30 85-114 84-113 (155)
69 PRK09423 gldA glycerol dehydro 22.0 65 0.0016 14.1 2.2 32 84-115 71-102 (366)
70 TIGR01980 sufB FeS assembly pr 21.8 50 0.0013 14.8 1.5 44 48-93 103-158 (469)
71 TIGR01292 TRX_reduct thioredox 21.5 66 0.0017 14.1 3.5 37 96-134 149-191 (321)
72 TIGR01923 menE O-succinylbenzo 21.1 23 0.00059 16.8 -0.4 24 99-122 392-422 (490)
73 cd04736 MDH_FMN Mandelate dehy 20.9 68 0.0017 14.0 4.0 71 30-106 226-297 (361)
74 PRK06830 diphosphate--fructose 20.5 70 0.0018 14.0 3.0 51 85-135 159-216 (442)
No 1
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=100.00 E-value=0 Score=385.20 Aligned_cols=159 Identities=36% Similarity=0.652 Sum_probs=149.1
Q ss_pred CEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEC
Q ss_conf 19999997179768562676877889999999970898799971111343456689638999214774345689859990
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVLAS 84 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~~~ 84 (176)
+|++|||+++||+||++|+||||+|+||+|||++|+|++||||||||+|||||||+|.||||||++.. .+++.++.
T Consensus 1 MI~lI~A~~~n~~IG~~~~LPW~lp~Dlk~Fk~~T~g~~vIMGRkT~eSi~rpLp~R~nIVlTr~~~~----~~~~~~~~ 76 (159)
T PRK10769 1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIVLSSQPGT----DDRVTWVK 76 (159)
T ss_pred CEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCC----CCCEEEEC
T ss_conf 97999998599957479953438889999999972898099965745568867999779999788987----79959999
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEE
Q ss_conf 18898876323798459997108899874200589999877386278476657895560898566510268888873699
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRF 164 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f 164 (176)
|+++|+..+.+ .++||||||++||+++|++||+||+|+|+++|+||+|||++|.+.|++++++ .+..+++|+++|+|
T Consensus 77 s~~~al~~~~~--~~~i~IiGG~~IY~~~l~~~d~l~lT~I~~~~egD~~fP~~d~~~w~~~~~e-~~~~d~~n~~~~~f 153 (159)
T PRK10769 77 SVDEAIAACGD--VPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDEWESVFSE-FHDADAQNSHSYCF 153 (159)
T ss_pred CHHHHHHHHCC--CCEEEEECCHHHHHHHHHHCCEEEEEEECCEECCCEECCCCCHHHCEEEEEE-ECCCCCCCCCCEEE
T ss_conf 99999998369--9809997399999999977899999998873677666799997998999999-75888889997189
Q ss_pred EEEEEE
Q ss_conf 999980
Q gi|254780957|r 165 VIYDRF 170 (176)
Q Consensus 165 ~~y~R~ 170 (176)
.+|+|+
T Consensus 154 ~~~~Rk 159 (159)
T PRK10769 154 EILERR 159 (159)
T ss_pred EEEECC
T ss_conf 999729
No 2
>pfam00186 DHFR_1 Dihydrofolate reductase.
Probab=100.00 E-value=0 Score=383.17 Aligned_cols=159 Identities=47% Similarity=0.825 Sum_probs=148.1
Q ss_pred CEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEC
Q ss_conf 19999997179768562676877889999999970898799971111343456689638999214774345689859990
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVLAS 84 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~~~ 84 (176)
+|++|||+++||+||++|+||||+|+||+|||++|+|++||||||||+|||+|||+|.||||||++.+.. +++.++.
T Consensus 1 mi~lI~A~~~n~~IG~~~~LPW~l~~Dl~~Fk~~T~~~~vIMGRkT~eSip~pLp~R~niVlsr~~~~~~---~~~~v~~ 77 (159)
T pfam00186 1 MISLIVAVDKNGVIGKDNDLPWHLPEDLKHFKALTMGKPIIMGRKTFESIGRPLPGRTNIVLTRNPDFKA---EGVEVVH 77 (159)
T ss_pred CEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCC---CCCEEEC
T ss_conf 9799999879995607995154478999999998589929996671334664599974999963566689---9858989
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEE
Q ss_conf 18898876323798459997108899874200589999877386278476657895560898566510268888873699
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRF 164 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f 164 (176)
|+++|++.+.+ .++||||||++||++++++||++|+|+|+.+|+||+|||++|.+.|++++++.. ..+++|+++|+|
T Consensus 78 s~~~al~~~~~--~~~i~ViGG~~iY~~~l~~~~~i~lT~I~~~~~~D~~fP~id~~~w~~~~~~~~-~~d~~n~~~y~f 154 (159)
T pfam00186 78 SLEEALALAAG--EEEIFIIGGAEIYKQALPYADRLYLTEIDAEFEGDTFFPEIDLSEWELVSREEH-PADEKNPYDYTF 154 (159)
T ss_pred CHHHHHHHHCC--CCCEEEECHHHHHHHHHHHCCEEEEEEECCEECCCEECCCCCHHHCEEEEEEEC-CCCCCCCCCEEE
T ss_conf 99999997248--883999886999999998789999999897366767879899678999999963-788888986799
Q ss_pred EEEEE
Q ss_conf 99998
Q gi|254780957|r 165 VIYDR 169 (176)
Q Consensus 165 ~~y~R 169 (176)
++|+|
T Consensus 155 ~~y~R 159 (159)
T pfam00186 155 VTYER 159 (159)
T ss_pred EEEEC
T ss_conf 99979
No 3
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=100.00 E-value=0 Score=347.24 Aligned_cols=157 Identities=45% Similarity=0.781 Sum_probs=143.0
Q ss_pred EEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCEEEEC
Q ss_conf 99999971797685626768778899999999708987999711113434-56689638999214774345689859990
Q gi|254780957|r 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG-RLLPGRTNIIITRDNTRRASVNPEAVLAS 84 (176)
Q Consensus 6 i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~-~pLp~R~niVlTr~~~~~~~~~~~~~~~~ 84 (176)
|++|||+++||+||++|+||||+|+||+|||++|+|++|||||+||+||| +|||+|.||||||++.... .+++.++.
T Consensus 1 i~lIvA~~~~~~IG~~~~lPW~~~~Dl~~F~~~T~~~~viMGr~T~esip~~pLp~R~niVlSr~~~~~~--~~~~~~~~ 78 (158)
T cd00209 1 ISLIVAVDENGVIGKDNKLPWHLPEDLKHFKKTTTGNPVIMGRKTFESIPRRPLPGRTNIVLSRQLDYQD--AEGVEVVH 78 (158)
T ss_pred CEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCEEEEEECCCCCCC--CCCCEECC
T ss_conf 9899998899956379962550889999999981798099966733324655689955999971788777--89818629
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEE
Q ss_conf 18898876323798459997108899874200589999877386278476657895560898566510268888873699
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRF 164 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f 164 (176)
|++++++.++ ...++||||||++||+++|++||++|+|+|+.+++||+|||+++.+.|++++.. ...+.+++.|+|
T Consensus 79 s~~~~l~~~~-~~~~~i~IiGG~~iY~~~l~~~d~i~lT~I~~~~~~D~~fp~~~~~~~~~~~~~---~~~~~~~~~~~f 154 (158)
T cd00209 79 SLEEALELAE-NTVEEIFVIGGAEIYKQALPYADRLYLTRIHAEFEGDTFFPEIDESEWELVSEE---EVFEEDGYSYTF 154 (158)
T ss_pred CHHHHHHHHH-CCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHCEEEEEE---ECCCCCCCCCEE
T ss_conf 9999999976-678849995789999999986197999987861068878899997888999977---314779985089
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780957|r 165 VIYD 168 (176)
Q Consensus 165 ~~y~ 168 (176)
++|+
T Consensus 155 ~~y~ 158 (158)
T cd00209 155 ETYE 158 (158)
T ss_pred EEEC
T ss_conf 9849
No 4
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=0 Score=347.68 Aligned_cols=163 Identities=34% Similarity=0.592 Sum_probs=141.6
Q ss_pred CCCCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHC-------------CCEEEEEECCCCCCC---CCCCCCEEE
Q ss_conf 9577199999971797685626768778899999999708-------------987999711113434---566896389
Q gi|254780957|r 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------------GNPVVMGYRTFQSIG---RLLPGRTNI 64 (176)
Q Consensus 1 m~~~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~-------------~~~vimGrkT~~sl~---~pLp~R~ni 64 (176)
++.++.++|||+++|++||++|+|||++|+||+|||++|+ +|+|||||||||||| ||||||.||
T Consensus 5 ~~~r~~slIvA~~~n~gIG~~n~LPW~lp~Dmk~Fk~iTT~~~~~~~~~~~~~~NaVIMGRKTweSIP~k~RPLpnR~NI 84 (512)
T PTZ00164 5 SSLRDFSIVVAVDENRGIGDKGTLPWKIPEDMKFFRRVTTYVRPKKVEKSPKKQNAVVMGRKTWESIPKKFRPLKNRINV 84 (512)
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCEEE
T ss_conf 77888439999889981446981067498999999997458765555566677817997377576589878889569189
Q ss_pred EEEECCCCCCCCCCCEEEECCHHHHHHHHC----CCCCCEEEEECHHHHHHHHHH--HCCEEEEEEECCCCCCCEECCCC
Q ss_conf 992147743456898599901889887632----379845999710889987420--05899998773862784766578
Q gi|254780957|r 65 IITRDNTRRASVNPEAVLASSILDSLDLAS----KTGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSI 138 (176)
Q Consensus 65 VlTr~~~~~~~~~~~~~~~~s~~~al~~~~----~~~~~~i~IIGG~~IY~~~l~--~~d~l~iT~I~~~~egD~~fP~i 138 (176)
||||+... .+++..+.++++|++.+. ....++||||||++||+++|+ +|++||+|+|+.+|+||||||++
T Consensus 85 VLSr~~~~----~~~~~~~~si~~al~~l~~~~~~~~~e~iFVIGG~~IY~eaL~~~~~~~IylT~I~~~~ecDtFFP~i 160 (512)
T PTZ00164 85 VLSRTLTK----EELLLVVPDLEDALRLLARPLYNLSIEKIFIIGGSQVYREALDANLLQKIYLTRINKAYECDVFFPEI 160 (512)
T ss_pred EECCCCCC----CCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 98998976----78961568899999999756752688708998179999988442248889998615621476417888
Q ss_pred CHHHEEEEEEEEEECCCCCCCCCEEEEEEEEEC
Q ss_conf 955608985665102688888736999999801
Q gi|254780957|r 139 DSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFL 171 (176)
Q Consensus 139 d~~~~~~~~~~~~~~~~e~n~~~y~f~~y~R~~ 171 (176)
+.+ |+..... .....++..|.|.+|.|..
T Consensus 161 d~~-f~~~~~S---~~~~~~~~~y~f~~y~~~~ 189 (512)
T PTZ00164 161 PEN-FQITQIS---QTFSSNGTSYDFVKYEPKD 189 (512)
T ss_pred CCC-CCEEECC---CEECCCCCEEEEEEEECCC
T ss_conf 864-4233213---1231588147778984455
No 5
>KOG1324 consensus
Probab=100.00 E-value=0 Score=297.46 Aligned_cols=165 Identities=33% Similarity=0.584 Sum_probs=137.4
Q ss_pred CCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHC-------CCEEEEEECCCCCCC---CCCCCCEEEEEEECCCCC
Q ss_conf 7199999971797685626768778899999999708-------987999711113434---566896389992147743
Q gi|254780957|r 4 PEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRR 73 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~-------~~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~ 73 (176)
....+|+|++.|.|||++|+|||++|.||+||+++|+ .|+||||||||+|+| ||||||.||||||+....
T Consensus 2 ~~~~~Vva~~~~mGIGk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k~RPL~gRiNiVLSR~~~~~ 81 (190)
T KOG1324 2 RLLNLVVALSPNMGIGKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEKFRPLPGRINVVLSRSLKED 81 (190)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 60579999755667564787898877888999987540477553304896123101187345889985579994466756
Q ss_pred CCCCCCEEEECCHHHHHHHHCCCCC----CEEEEECHHHHHHHHHH--HCCEEEEEEECCCCCCCEECCCCCHHHEEEEE
Q ss_conf 4568985999018898876323798----45999710889987420--05899998773862784766578955608985
Q gi|254780957|r 74 ASVNPEAVLASSILDSLDLASKTGS----KKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQE 147 (176)
Q Consensus 74 ~~~~~~~~~~~s~~~al~~~~~~~~----~~i~IIGG~~IY~~~l~--~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~ 147 (176)
.....++++++|++.|++.+++.+. +.||||||++||+++|. .||.||+|+|+.+++||+|||.+|....+...
T Consensus 82 ~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~T~I~~~~~cDtffP~id~s~y~~~~ 161 (190)
T KOG1324 82 FAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHITEIFQSFECDTFFPAIDTSSYEKWD 161 (190)
T ss_pred CCCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCHHH
T ss_conf 67756789831399999851388533521479998688999998738775528988732467755446667757743245
Q ss_pred E-----EEEECCCCCCCCCEEEEEEE
Q ss_conf 6-----65102688888736999999
Q gi|254780957|r 148 K-----EIITSAGEGDDYPTRFVIYD 168 (176)
Q Consensus 148 ~-----~~~~~~~e~n~~~y~f~~y~ 168 (176)
+ +......+.+.+.+.+.+|+
T Consensus 162 ~~~pv~~~~~~~~~e~~lk~k~~~~e 187 (190)
T KOG1324 162 KLFPVSENGLRVQEETFLKPKSAIFE 187 (190)
T ss_pred HCCCCCCCCCHHHHHCCCCCEECCCC
T ss_conf 31853124520355437662011235
No 6
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=290.64 Aligned_cols=160 Identities=40% Similarity=0.678 Sum_probs=146.8
Q ss_pred CEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC---CCCCCCEEEEEEECCCCCCCCCCC-E
Q ss_conf 199999971797685626768778899999999708987999711113434---566896389992147743456898-5
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPE-A 80 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~~~~~~~-~ 80 (176)
+|++|+|++.||+||.+|+|||++|+|++||++.|++++||||||||||+| +|||+|.|+|+||+++.+.+ + +
T Consensus 1 ~i~~i~A~s~dG~Ig~~~~lpW~~~~~~~~Fk~~t~~~~viMGRkT~esl~~~~~pl~~r~~iV~sr~~~~~~e---~~~ 77 (167)
T COG0262 1 MIILIVAVSLDGVIGRDNSLPWHLPEDLAHFKATTLGKPVIMGRKTYESLPGEWRPLPGRKNIVLSRNPDLKTE---GGV 77 (167)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCCC---CCE
T ss_conf 98999998788830028988888878988898752698289714014442112787999849998179876678---858
Q ss_pred EEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHH--HCCEEEEEEECCCC-CCCEECCCCCHHHEEEEEEEEEECCCCC
Q ss_conf 99901889887632379845999710889987420--05899998773862-7847665789556089856651026888
Q gi|254780957|r 81 VLASSILDSLDLASKTGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEI-EGDVFFPSIDSNIWKKQEKEIITSAGEG 157 (176)
Q Consensus 81 ~~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~--~~d~l~iT~I~~~~-egD~~fP~id~~~~~~~~~~~~~~~~e~ 157 (176)
.++.|+++++..+.....++||||||+++|+++++ ++|++++|.|+..+ +||+|||..+...|+++.++ ..++.
T Consensus 78 ~v~~s~~~al~~~~~~~~~~i~IiGG~~l~~~~l~~~l~Del~lt~ip~~lg~Gd~~Fp~~~~~~~~~~~~~---~~~~~ 154 (167)
T COG0262 78 EVVDSIEEALLLLLKEEGEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEGDTLFPEGDPADWELVSSE---DADEK 154 (167)
T ss_pred EEECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHEEEEEEE---ECCCC
T ss_conf 984899999998641679859999799999998504633389999544014777745787451020786466---30457
Q ss_pred CCCCEEEEEEEEE
Q ss_conf 8873699999980
Q gi|254780957|r 158 DDYPTRFVIYDRF 170 (176)
Q Consensus 158 n~~~y~f~~y~R~ 170 (176)
+.+.|+|..|+|.
T Consensus 155 ~~~~~~~~~~~~~ 167 (167)
T COG0262 155 GGYFYTFESYERR 167 (167)
T ss_pred CCEEEEEEEECCC
T ss_conf 7357898860259
No 7
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=216.94 Aligned_cols=143 Identities=29% Similarity=0.462 Sum_probs=129.5
Q ss_pred CEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEC
Q ss_conf 19999997179768562676877889999999970898799971111343456689638999214774345689859990
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVLAS 84 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~~~ 84 (176)
+|++||+.+.|+|||++|+|||.+.|+++||+++|++++||||.+||.|++..|++|.|||+|+....+...+...++++
T Consensus 1 MikLIWCqd~n~GI~knN~iPW~i~E~LnHF~~tT~N~tIVMGynTF~al~~~L~n~~niV~Sk~~q~eL~~n~~l~Vfn 80 (505)
T PRK00478 1 MIKLIWCEDLNFGIAKNNQIPWKIDEELNHFHQTTTNHTIVMGYNTFQAMNKILANQANIVISKKHQRELKNNNELFVFN 80 (505)
T ss_pred CCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCEEEHH
T ss_conf 93489971476671558838840078888887535576488712269999876146761897566565356787468625
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEE
Q ss_conf 1889887632379845999710889987420058999987738627847665789556089856651
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEII 151 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~ 151 (176)
++++++..+. .+++|||||.++|++|+.+||+++++.+..+|+||-|| +.+.++|.+.....+
T Consensus 81 d~qqlL~d~~---n~DlfIIGGK~l~~~Fin~aD~LIVS~Ln~~ykCdL~~-~~~~d~F~Lvkq~~y 143 (505)
T PRK00478 81 DLKKLLIDFS---NVDLFIIGGKKTIEQFIKYADQLIISKLNADYKCDLFV-NLNYDDFSLVQTKEY 143 (505)
T ss_pred HHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHEEEEEECCCCCCCCEEE-ECCCCCCEEHHHHHH
T ss_conf 6999998720---37079985788999999850201442046434677588-638763020216777
No 8
>pfam01872 RibD_C RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.
Probab=99.25 E-value=3.4e-10 Score=79.90 Aligned_cols=148 Identities=17% Similarity=0.239 Sum_probs=104.1
Q ss_pred CCEEEEEEECCCCEEEE-CCCCCC-CCHHHHHHHHHHH-CCCEEEEEECCCCCC-C----C------CCCCCEEEEEEEC
Q ss_conf 71999999717976856-267687-7889999999970-898799971111343-4----5------6689638999214
Q gi|254780957|r 4 PEIILIAAITRNNVIGS-CGGMPW-KISSDLKRFKSLT-TGNPVVMGYRTFQSI-G----R------LLPGRTNIIITRD 69 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG~-~~~lPW-~~~~Dl~~Fk~~T-~~~~vimGrkT~~sl-~----~------pLp~R~niVlTr~ 69 (176)
|.|.+-.|++.||-|.. +|+.-| .-++|.+++.+.- ...+|+||++|+..- | + +..+-.-+|+|++
T Consensus 1 P~V~l~~A~SlDG~Ia~~~g~~~wis~~~~~~~~~~lR~~~daIlvG~~T~~~d~p~l~~r~~~~~~~~~~p~~vVl~~~ 80 (196)
T pfam01872 1 PYVILKFAISLDGKIAAAGGSSQWITGEEARADVHQLRAEADAILVGRGTVRADNPSLTVRWVKGRAAERQPPRVVVDST 80 (196)
T ss_pred CEEEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECHHHHHHHCCCCCEECCCCCCCCCCCEEEEECCC
T ss_conf 98999999969888599999867138977989999998618959974565211075651650476631369829998378
Q ss_pred CCCCCC-----CCCCEEEE-----------------CCHHHHHHHHCCCCCCEEEEECHHHHHHHHH--HHCCEEEEEEE
Q ss_conf 774345-----68985999-----------------0188988763237984599971088998742--00589999877
Q gi|254780957|r 70 NTRRAS-----VNPEAVLA-----------------SSILDSLDLASKTGSKKIFIIGGGEIYAQTI--SLAHTLYITHI 125 (176)
Q Consensus 70 ~~~~~~-----~~~~~~~~-----------------~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I 125 (176)
...... ......++ .++.++++.+.+.+.+.|+|-||+++..+|+ .++||+++|..
T Consensus 81 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~ilveGG~~l~~~fl~~~LiDE~~l~i~ 160 (196)
T pfam01872 81 LRVPLDARVLNDDAPTLVATTEPADKEKVEKLKVLRVDLKELLRELKERGIRSLLVEGGATLAGSLLRAGLVDELRLYIA 160 (196)
T ss_pred CCCCCHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 88892124425899889998376325432122345789999999998679987999857999999976884889899983
Q ss_pred CCCCC--CCEECCCCCH--HHEEEEEEEEE
Q ss_conf 38627--8476657895--56089856651
Q gi|254780957|r 126 EKEIE--GDVFFPSIDS--NIWKKQEKEII 151 (176)
Q Consensus 126 ~~~~e--gD~~fP~id~--~~~~~~~~~~~ 151 (176)
+.-.. |-..|+.... -.+++.+.+.+
T Consensus 161 P~ilG~~g~~~f~~~~~~~~~l~l~~~~~~ 190 (196)
T pfam01872 161 PKLLGGGGRTLFGGEGFLALKLKLVSSEAI 190 (196)
T ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 667889997777889976767689889992
No 9
>PRK05625 hypothetical protein; Validated
Probab=98.81 E-value=4.6e-07 Score=61.67 Aligned_cols=165 Identities=16% Similarity=0.208 Sum_probs=103.5
Q ss_pred CCCCCEEEEEEECCCCEEEECCCCC-CCCHHHHHHHHHH-HCCCEEEEEECCCCCC-CCC----------------CCCC
Q ss_conf 9577199999971797685626768-7788999999997-0898799971111343-456----------------6896
Q gi|254780957|r 1 MTRPEIILIAAITRNNVIGSCGGMP-WKISSDLKRFKSL-TTGNPVVMGYRTFQSI-GRL----------------LPGR 61 (176)
Q Consensus 1 m~~~~i~~I~A~~~n~~IG~~~~lP-W~~~~Dl~~Fk~~-T~~~~vimGrkT~~sl-~~p----------------Lp~R 61 (176)
|.+|-|.+.+|++.+|-|..++.-- |.-|+|.+++.++ ....+|++|.+|...= |+. -|.-
T Consensus 17 ~~RP~V~~k~A~SlDGkIa~~~~~~~It~~~~r~~~h~LRa~~DaIlvG~~Tv~~D~P~Ltv~~~~~~~~r~~~g~~~~P 96 (239)
T PRK05625 17 LMRPYVRANFATSLDGAATTKGRSGPLSGPADRRRFHALRALADVVLVGAGTVRAENYSLTVLSAERRAARQARGQSENP 96 (239)
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 89983999998867568617998636899999999999986468699724568701886543633456666641677899
Q ss_pred EEEEEEECCCCC-------CCCC--------------------CCEEEE------CCHHHHHHHHCCCCCCEEEEECHHH
Q ss_conf 389992147743-------4568--------------------985999------0188988763237984599971088
Q gi|254780957|r 62 TNIIITRDNTRR-------ASVN--------------------PEAVLA------SSILDSLDLASKTGSKKIFIIGGGE 108 (176)
Q Consensus 62 ~niVlTr~~~~~-------~~~~--------------------~~~~~~------~s~~~al~~~~~~~~~~i~IIGG~~ 108 (176)
..||++++.... .... .++.+. .++.++++.+.+.+.+.++|=||++
T Consensus 97 ~~vIld~~~~l~~~~~lf~~~~~~~li~~~~~~~~~~~~~l~~~~i~v~~~~~~~ldl~~il~~L~~~gi~~lLvEGG~~ 176 (239)
T PRK05625 97 PRAVVSSSLRLDPDARLFTDGEVPPIVLTSAAAPADRRRELAAKAEVVVVGGDDRVDLAAALDALAERGLRRILCEGGPT 176 (239)
T ss_pred CEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 18998289898955311136999989998898898999999858969995799987999999999976999899862799
Q ss_pred HHHHHH--HHCCEEEEEEECCCCCCCE----ECCCCCHHHEEEEEEEEEECCCCCCCCCEEEEEEEEE
Q ss_conf 998742--0058999987738627847----6657895560898566510268888873699999980
Q gi|254780957|r 109 IYAQTI--SLAHTLYITHIEKEIEGDV----FFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRF 170 (176)
Q Consensus 109 IY~~~l--~~~d~l~iT~I~~~~egD~----~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f~~y~R~ 170 (176)
+..+|+ .++||+++|.-+.-..|+. ..|.+..+..++.-.. .... +-+-.|..|+|.
T Consensus 177 l~~sfl~~~LvDEl~l~iaP~iiGg~~~~~~~g~~~~~~~~rl~l~~-~~~~----~~~~~~~~y~~~ 239 (239)
T PRK05625 177 LLGSLLAAGLVDELCLTIAPRLVGGGAARIVDGPGFPTDELRLRLAH-VLTD----DDGVLLTRYVRG 239 (239)
T ss_pred HHHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCEEEE-EEEE----CCCEEEEEEECC
T ss_conf 99999987985087431768677689987667988555331127401-7892----895899988539
No 10
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=97.31 E-value=0.013 Score=35.71 Aligned_cols=131 Identities=17% Similarity=0.295 Sum_probs=85.7
Q ss_pred CCCCCEEEEEEECCCCEEEEC-CCCCC-CCHHHHHHHHHHHC-CCEEEEEECCCCC----CC-C--CC---CCCEEEEEE
Q ss_conf 957719999997179768562-67687-78899999999708-9879997111134----34-5--66---896389992
Q gi|254780957|r 1 MTRPEIILIAAITRNNVIGSC-GGMPW-KISSDLKRFKSLTT-GNPVVMGYRTFQS----IG-R--LL---PGRTNIIIT 67 (176)
Q Consensus 1 m~~~~i~~I~A~~~n~~IG~~-~~lPW-~~~~Dl~~Fk~~T~-~~~vimGrkT~~s----l~-~--pL---p~R~niVlT 67 (176)
|-+|.+.+=+|++.+|.|+.. |.--| ..|++.+..-++-. -.+|+.|-.|-.. +- | .. .+-.-||++
T Consensus 1 ~~rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~rVIlD 80 (218)
T COG1985 1 RGRPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAESDAILVGSGTVLADNPSLTVRLPEGGEERNPVRVILD 80 (218)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCEECCCCCCCCCCEEEEEC
T ss_conf 99963999999713676126798753673988999999999875989977667980288522424888766798799987
Q ss_pred ECCCCC----C-CCC---CCEEEEC------------------------CHHHHHHHHCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 147743----4-568---9859990------------------------1889887632379845999710889987420
Q gi|254780957|r 68 RDNTRR----A-SVN---PEAVLAS------------------------SILDSLDLASKTGSKKIFIIGGGEIYAQTIS 115 (176)
Q Consensus 68 r~~~~~----~-~~~---~~~~~~~------------------------s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~ 115 (176)
++.... . ... |...+.. ++..+++.+.+...+.++|=||+.+..+|+.
T Consensus 81 ~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~~i~~vlvEGG~~L~~s~l~ 160 (218)
T COG1985 81 SRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAERGINSVLVEGGATLNGSFLE 160 (218)
T ss_pred CCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
T ss_conf 89888713332206888848999468436667787479779984866548999999998666728998438999999997
Q ss_pred --HCCEEEEEEECCCCCC
Q ss_conf --0589999877386278
Q gi|254780957|r 116 --LAHTLYITHIEKEIEG 131 (176)
Q Consensus 116 --~~d~l~iT~I~~~~eg 131 (176)
++|++.++.-..-+.+
T Consensus 161 ~glVDel~l~iaP~i~G~ 178 (218)
T COG1985 161 AGLVDELLLYIAPKILGG 178 (218)
T ss_pred CCCCCEEEEEECCHHCCC
T ss_conf 799718999983321178
No 11
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=97.11 E-value=0.015 Score=35.41 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=84.8
Q ss_pred CCCEEEEEEECCCCEEE-ECCCCCC-CCH---HHHHHHHHHHCCCEEEEEECCCCC----CC-C--CCC-----------
Q ss_conf 77199999971797685-6267687-788---999999997089879997111134----34-5--668-----------
Q gi|254780957|r 3 RPEIILIAAITRNNVIG-SCGGMPW-KIS---SDLKRFKSLTTGNPVVMGYRTFQS----IG-R--LLP----------- 59 (176)
Q Consensus 3 ~~~i~~I~A~~~n~~IG-~~~~lPW-~~~---~Dl~~Fk~~T~~~~vimGrkT~~s----l~-~--pLp----------- 59 (176)
+|-|.+=+|++.||-|+ .+|+=-| .-+ +|.++.|..- .+|+.|.+|-.. |- | .|+
T Consensus 146 rP~VtlK~A~SlDGkiA~~~g~SkWIT~~~sR~~vH~LRa~~--DAIlvG~~Tv~~DnP~Lt~R~~~~~~~~~~~~~~~~ 223 (367)
T PRK10786 146 FPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQS--HAILTSSATVLADDPALTVRWSELDAQTQALYPQEN 223 (367)
T ss_pred CCEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCC--CEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 975999981255666140479764157477887999876518--759978770043397644466776542112354324
Q ss_pred --CCEEEEEEECCCCCC-----C-C---------------CCCEEE--E------CCHHHHHHHHCCCCCCEEEEECHHH
Q ss_conf --963899921477434-----5-6---------------898599--9------0188988763237984599971088
Q gi|254780957|r 60 --GRTNIIITRDNTRRA-----S-V---------------NPEAVL--A------SSILDSLDLASKTGSKKIFIIGGGE 108 (176)
Q Consensus 60 --~R~niVlTr~~~~~~-----~-~---------------~~~~~~--~------~s~~~al~~~~~~~~~~i~IIGG~~ 108 (176)
.=.-|||.++..... . . ..++.. + -++..+++.+.+.+...++|=||+.
T Consensus 224 ~~qP~RvVlD~~~r~~~~~~i~~~~~~~~i~~~~~~~~~~~~~v~~i~~~~~~~~ldl~~il~~L~~~gi~~lLVEgG~~ 303 (367)
T PRK10786 224 LRQPVRIVIDSQNRVTPEHRIVQQPGETWFARTQEDSREWPETVRTLLLPEHKGHLDLVVLMMQLGKQQINSIWVEAGPT 303 (367)
T ss_pred CCCCEEEEEECCCCCCHHHHHHCCCCCEEEEEECHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 67981899817988881556536898679998361221300687799964657887999999999975899899944799
Q ss_pred HHHHHHH--HCCEEEEEEECCCCCCC
Q ss_conf 9987420--05899998773862784
Q gi|254780957|r 109 IYAQTIS--LAHTLYITHIEKEIEGD 132 (176)
Q Consensus 109 IY~~~l~--~~d~l~iT~I~~~~egD 132 (176)
+..+||. ++|++++..=..-..+|
T Consensus 304 l~~sfl~~~LvDel~~y~APkilG~~ 329 (367)
T PRK10786 304 LAGALLQAGLVDELIVYIAPKLLGSD 329 (367)
T ss_pred HHHHHHHCCCCCEEEEEECCHHHCCC
T ss_conf 99999877985397867747744899
No 12
>pfam02476 US2 US2 family. This is a family of unique short (US) region proteins from the herpesvirus strain. The US2 family have no known function.
Probab=73.97 E-value=5.5 Score=20.38 Aligned_cols=38 Identities=13% Similarity=0.408 Sum_probs=32.6
Q ss_pred CEEEEECHHHHHHHHHHHCC---EEEEEEECCCCCCCEE-CC
Q ss_conf 45999710889987420058---9999877386278476-65
Q gi|254780957|r 99 KKIFIIGGGEIYAQTISLAH---TLYITHIEKEIEGDVF-FP 136 (176)
Q Consensus 99 ~~i~IIGG~~IY~~~l~~~d---~l~iT~I~~~~egD~~-fP 136 (176)
=++||+|-+.+++.+|.++- ++.-.+|.+.+.|-.. .|
T Consensus 12 yhLWVvGAADLC~Pv~e~ip~pkRlvaa~v~~aw~g~sW~~P 53 (124)
T pfam02476 12 YHLWVVGAADLCAPVLEHIPGPKRLVAAKVPGAWAGASWALP 53 (124)
T ss_pred EEEEEECHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 007884167786999974868624899975764458864577
No 13
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain; InterPro: IPR011549 Eubacterial riboflavin-specific deaminases have a zinc-binding domain, IPR002125 from INTERPRO, toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins related to riboflavin biosynthesis consist only of this domain and lack the zinc-binding domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0050661 NADP binding, 0009231 riboflavin biosynthetic process.
Probab=67.83 E-value=10 Score=18.76 Aligned_cols=128 Identities=15% Similarity=0.309 Sum_probs=81.6
Q ss_pred CCCEEEEEEECCCCEEEEC-CCCCC-CCHHHHHHHHHHHC-CCEEEEEECCCC----CC-------C---------CCCC
Q ss_conf 7719999997179768562-67687-78899999999708-987999711113----43-------4---------5668
Q gi|254780957|r 3 RPEIILIAAITRNNVIGSC-GGMPW-KISSDLKRFKSLTT-GNPVVMGYRTFQ----SI-------G---------RLLP 59 (176)
Q Consensus 3 ~~~i~~I~A~~~n~~IG~~-~~lPW-~~~~Dl~~Fk~~T~-~~~vimGrkT~~----sl-------~---------~pLp 59 (176)
.|=|.+=+|++.+|=|... |+=-| ..|+|++.-.++=. .++|+.|-.|=. +| + ..|+
T Consensus 2 ~Pyv~lk~A~sLDGkiA~~~g~s~~It~e~ar~~Vh~lR~~~daIlvG~gTVlaDdP~LTv~~~~~~e~~~~~yk~~~L~ 81 (239)
T TIGR00227 2 RPYVILKLAMSLDGKIATASGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRLTVRWVELPEALQAEYKKENLR 81 (239)
T ss_pred CCEEEEECCCCCCHHHHCCCCCCCEECCHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCCCCCCCHHHHHCCCHHHCC
T ss_conf 97289720123240211268865348287898999987656197887472377217755677988744554212145516
Q ss_pred CCEEEEEEE----CCC-------------------------CCCC-----CCCC--EEEE----C---CHHHHHHHHCCC
Q ss_conf 963899921----477-------------------------4345-----6898--5999----0---188988763237
Q gi|254780957|r 60 GRTNIIITR----DNT-------------------------RRAS-----VNPE--AVLA----S---SILDSLDLASKT 96 (176)
Q Consensus 60 ~R~niVlTr----~~~-------------------------~~~~-----~~~~--~~~~----~---s~~~al~~~~~~ 96 (176)
+=.=|||.+ ... .... ..++ +.++ . ++...++.+.+.
T Consensus 82 ~PvRvv~DskqkW~~r~p~~~~~~~~~~Gka~t~~~ts~~~d~e~ekk~~~l~~~~~~~~~~~~~G~v~l~~Lm~~L~~~ 161 (239)
T TIGR00227 82 NPVRVVLDSKQKWRLRVPPTARLLNDEVGKAPTWVATSEPADEEKEKKVKELEDFGVEVIVLETKGRVDLKKLMEILYEE 161 (239)
T ss_pred CCCCEEEECCCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHEEEEEECCCCCEECHHHHHHHHHHH
T ss_conf 99518982674032158801177621679825799962437830102443102014477871877633689999997786
Q ss_pred -CCCEEEEECHH-HHHHHHH--HHCCEEEEEEECCCCC
Q ss_conf -98459997108-8998742--0058999987738627
Q gi|254780957|r 97 -GSKKIFIIGGG-EIYAQTI--SLAHTLYITHIEKEIE 130 (176)
Q Consensus 97 -~~~~i~IIGG~-~IY~~~l--~~~d~l~iT~I~~~~e 130 (176)
+.+.|||=||+ -+-..++ ..+|+++++.=..-.-
T Consensus 162 f~I~~~~vEgG~n~L~~~l~~~glVde~~~yiAPk~~G 199 (239)
T TIGR00227 162 FGIRSVMVEGGGNTLNGSLLKEGLVDEVIIYIAPKLLG 199 (239)
T ss_pred HCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCEEEC
T ss_conf 39448999626689999998239820898886041126
No 14
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein; InterPro: IPR013366 Salmonella typhimurium is capable of growth on ethanolamine as a sole source of carbon nitrogen and energy . During growth on this compound the cells form a multimolecular structure known as a metabolosome, which is similar to the carboxysome used by some photosynthetic bacteria to fix CO2, and is thought to contain the enzymes needed to metabolise this compound to acetyl-CoA. The metabolosome is not directly involved in the biochemistry of ethanolamine utilization - instead its role is thought to be to concentrate the enzymes involved in this process, while also protecting the cell from the build-up of toxic intermediates . The genes involved in growth on ethanolamine are encoded in a 17-gene operon known as the ethanolamine utilization (eut) operon. EutJ shows similarity to chaperonins and may play a role in assembly of the metabolosme , though it is not necessary for growth on this compound..
Probab=66.14 E-value=2.6 Score=22.30 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=22.0
Q ss_pred HHCCCCCCEEEEECHHHHHHHHHHHCC
Q ss_conf 632379845999710889987420058
Q gi|254780957|r 92 LASKTGSKKIFIIGGGEIYAQTISLAH 118 (176)
Q Consensus 92 ~~~~~~~~~i~IIGG~~IY~~~l~~~d 118 (176)
+++..+-++||+.||++-|.+|-+...
T Consensus 189 hi~~~~v~~~yLVGGac~~~~f~~~F~ 215 (240)
T TIGR02529 189 HIEGQKVKDLYLVGGACSFSGFEDVFE 215 (240)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 851188336898244005224678887
No 15
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=65.72 E-value=12 Score=18.51 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=48.3
Q ss_pred HHCCCEEEEEECCCCCCCC---CCCCCEEEEEEECCCCCC-----------CCCCCEEE---------ECCHHHHHHHHC
Q ss_conf 7089879997111134345---668963899921477434-----------56898599---------901889887632
Q gi|254780957|r 38 LTTGNPVVMGYRTFQSIGR---LLPGRTNIIITRDNTRRA-----------SVNPEAVL---------ASSILDSLDLAS 94 (176)
Q Consensus 38 ~T~~~~vimGrkT~~sl~~---pLp~R~niVlTr~~~~~~-----------~~~~~~~~---------~~s~~~al~~~~ 94 (176)
.+++..|.+|+..-+.+|. -|-.++-+|+|-..-.+. ...-.+.+ ...++++++.+.
T Consensus 4 ~~~~~~~~FG~g~l~~l~~~~~~~G~k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r 83 (381)
T PRK10624 4 MILNETAYFGRGAVGALTDEVKRRGYHKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQ 83 (381)
T ss_pred EECCCCEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 33798758997699999999997499879999696545563699999999876983999889258989999999999998
Q ss_pred CCCCCEEEEECHHHHHHHHH
Q ss_conf 37984599971088998742
Q gi|254780957|r 95 KTGSKKIFIIGGGEIYAQTI 114 (176)
Q Consensus 95 ~~~~~~i~IIGG~~IY~~~l 114 (176)
+.+.+-|.-+||+++...+-
T Consensus 84 ~~~~D~IiavGGGSviD~AK 103 (381)
T PRK10624 84 ASGADYLIAIGGGSPQDTCK 103 (381)
T ss_pred HCCCCEEEEECCCHHHHHHH
T ss_conf 64999899808940888999
No 16
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=57.32 E-value=16 Score=17.62 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=45.3
Q ss_pred EECCHHHHHHHHCCCCCCEEEEECHHH----------HHHHHHHHCCEEEEEEECCCCCCC-------EECCCCCHHHEE
Q ss_conf 990188988763237984599971088----------998742005899998773862784-------766578955608
Q gi|254780957|r 82 LASSILDSLDLASKTGSKKIFIIGGGE----------IYAQTISLAHTLYITHIEKEIEGD-------VFFPSIDSNIWK 144 (176)
Q Consensus 82 ~~~s~~~al~~~~~~~~~~i~IIGG~~----------IY~~~l~~~d~l~iT~I~~~~egD-------~~fP~id~~~~~ 144 (176)
+..+++||++..+. ..|.|.||-+ +..+++.-=.-+++|=|++-|+-| .+|+++..++..
T Consensus 95 vP~~~~EA~~~~~~---~~ivVmGGt~PGhtTDAVAA~lAE~~~ad~L~~~TnVDGVYd~DP~~~~~A~~~~~l~~~eL~ 171 (232)
T TIGR02076 95 VPENFEEALEAMSL---GKIVVMGGTEPGHTTDAVAALLAEFLEADLLINATNVDGVYDKDPNKYPDAKKFDKLTPEELV 171 (232)
T ss_pred CCCCHHHHHHHHHC---CCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 98898999999826---987986687898528999999976626872699822685217777888784000258988999
Q ss_pred EE
Q ss_conf 98
Q gi|254780957|r 145 KQ 146 (176)
Q Consensus 145 ~~ 146 (176)
..
T Consensus 172 ~i 173 (232)
T TIGR02076 172 EI 173 (232)
T ss_pred HH
T ss_conf 98
No 17
>TIGR01508 rib_reduct_arch diaminohydroxyphosphoribosylaminopyrimidine reductase; InterPro: IPR006401 These sequences represent a specific reductase of riboflavin biosynthesis in the archaea, diaminohydroxyphosphoribosylaminopyrimidine reductase. It should not be confused with bacterial 5-amino-6-(5-phosphoribosylamino)uracil reductase. The intermediate 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine in riboflavin biosynthesis is reduced first and then deaminated in both archaea and fungi, opposite to the order in bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain fused to the reductase domain, which is similar to this protein but found in most bacteria. .
Probab=56.07 E-value=13 Score=18.25 Aligned_cols=125 Identities=17% Similarity=0.293 Sum_probs=83.1
Q ss_pred CCEEEEEEECCCCEEEE-CCC-CCCCCHHHHHHHHHHHCC-CEEEEEECCCC---------CC-------CC-CCCCCEE
Q ss_conf 71999999717976856-267-687788999999997089-87999711113---------43-------45-6689638
Q gi|254780957|r 4 PEIILIAAITRNNVIGS-CGG-MPWKISSDLKRFKSLTTG-NPVVMGYRTFQ---------SI-------GR-LLPGRTN 63 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG~-~~~-lPW~~~~Dl~~Fk~~T~~-~~vimGrkT~~---------sl-------~~-pLp~R~n 63 (176)
|-|..=+|++.+|-|.. .+. +--++++|+++--++=.. -+|-.|=.|=. +. .+ -=||=.=
T Consensus 1 pYvi~n~a~S~DGkLat~~~~Q~~lSC~~D~~rv~~lRA~vDAvMVG~gTVl~DdP~LTv~~~~~~~~k~~rG~~PnP~R 80 (224)
T TIGR01508 1 PYVIVNVAMSLDGKLATKTREQSRLSCEEDLERVDELRAEVDAVMVGIGTVLADDPSLTVKKAELVEKKEERGKEPNPVR 80 (224)
T ss_pred CEEEEEEEEEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEE
T ss_conf 93899981034003203678723881556666674320125768865521760084442122124778873578759779
Q ss_pred EEEEEC----------------------CCCCC-------CCCCCEEEE------CCHHHHHHHHCCCCCCEEEEECHHH
Q ss_conf 999214----------------------77434-------568985999------0188988763237984599971088
Q gi|254780957|r 64 IIITRD----------------------NTRRA-------SVNPEAVLA------SSILDSLDLASKTGSKKIFIIGGGE 108 (176)
Q Consensus 64 iVlTr~----------------------~~~~~-------~~~~~~~~~------~s~~~al~~~~~~~~~~i~IIGG~~ 108 (176)
||++|. ..... -...++.++ -.+.++++.+...+-+.+.|=||+.
T Consensus 81 vVvds~~r~pl~ariL~~~A~T~v~~s~~~~~Ekekk~~~l~~~gv~V~~~G~~~v~L~~lld~L~~kgv~rLmvEGGG~ 160 (224)
T TIGR01508 81 VVVDSKLRVPLSARILNKEAKTVVAVSEAEPEEKEKKVEELEKKGVEVVKFGEERVDLEKLLDILEDKGVRRLMVEGGGT 160 (224)
T ss_pred EEECCEECCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCE
T ss_conf 99712007898720446898459996047873036788877749748999247853468999998747970999824851
Q ss_pred HHHHHH--HHCCEEEEEEECCC
Q ss_conf 998742--00589999877386
Q gi|254780957|r 109 IYAQTI--SLAHTLYITHIEKE 128 (176)
Q Consensus 109 IY~~~l--~~~d~l~iT~I~~~ 128 (176)
+.-.++ +++|||-++.=+.-
T Consensus 161 Li~~l~~~~LvDEi~vy~aP~~ 182 (224)
T TIGR01508 161 LIWSLIKENLVDEIRVYIAPKI 182 (224)
T ss_pred EEHHHHHCCCEEEEEEEECCEE
T ss_conf 0102230284358999881467
No 18
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.63 E-value=18 Score=17.46 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCC-EEEEECHH
Q ss_conf 56689638999214774345689859990188988763237984-59997108
Q gi|254780957|r 56 RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSK-KIFIIGGG 107 (176)
Q Consensus 56 ~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~-~i~IIGG~ 107 (176)
++||.|.-+|-+.+--...+ -...++++.++..++....+ -+||.||.
T Consensus 260 ~gl~HRlE~v~~~~gv~fiN----DSKATN~~At~~Al~~~~~~~iilI~GG~ 308 (401)
T PRK03815 260 VIEAHKLEEFRDKQGRLWVD----DSKATNIDATIQALKRYKDKKIHLILGGD 308 (401)
T ss_pred CCCCCCEEEEEEECCEEEEC----CCCCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99888538999848989966----88789889999999837678679996376
No 19
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=52.20 E-value=20 Score=17.13 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCC-CEEEEECH---------HHHHHHHHHHCCEEEEEEECC
Q ss_conf 68963899921477434568985999018898876323798-45999710---------889987420058999987738
Q gi|254780957|r 58 LPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGS-KKIFIIGG---------GEIYAQTISLAHTLYITHIEK 127 (176)
Q Consensus 58 Lp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~-~~i~IIGG---------~~IY~~~l~~~d~l~iT~I~~ 127 (176)
.|+|..+|-..+.- ..-. .-+.-..++..+++.+.+... +-+.|.|. ..+=+.+-.++|.+++|..+.
T Consensus 1 vpGR~e~i~~~~~~-~vi~-DyaHnp~~~~a~l~~~~~~~~~r~i~V~G~~g~r~~~~r~~~g~~a~~~ad~viit~~~p 78 (87)
T pfam02875 1 VPGRLEVVGENNGV-LVID-DYAHNPDALEAALQALKELFDGRLILVFGAGGDRDAEFHALLGALAAALADVVILTGDYP 78 (87)
T ss_pred CCCCCEEEECCCCC-EEEE-ECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99973898658997-8999-678996999999999986268878999999888867899999999997199999999889
Q ss_pred CC
Q ss_conf 62
Q gi|254780957|r 128 EI 129 (176)
Q Consensus 128 ~~ 129 (176)
-.
T Consensus 79 ~~ 80 (87)
T pfam02875 79 RA 80 (87)
T ss_pred CC
T ss_conf 99
No 20
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=50.98 E-value=19 Score=17.21 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCCCC-EEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 37984-5999710889------987420058999987
Q gi|254780957|r 95 KTGSK-KIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 95 ~~~~~-~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
+.+.+ -++|+||+.| .+.+++.+|.+.+.=
T Consensus 185 ~~p~rP~~aIiGGaKisdKi~vi~~l~~k~D~iiiGG 221 (397)
T cd00318 185 ENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGG 221 (397)
T ss_pred HCCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEECH
T ss_conf 1888974999728862157999999998478899760
No 21
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.44 E-value=22 Score=16.87 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHH
Q ss_conf 5668963899921477434568985999018898876323798459997108
Q gi|254780957|r 56 RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGG 107 (176)
Q Consensus 56 ~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~ 107 (176)
++||.|.-+|-+.+--...+ -...++++.++..+.....+-+||.||.
T Consensus 275 ~glpHR~E~v~~~~Gv~fiN----DSKaTN~~a~~~AL~s~~~~iilI~GG~ 322 (418)
T PRK00683 275 EKPPHRMEYLGEKDGVHYIN----DSKATTVSAVEKALLAVGKDVIVILGGR 322 (418)
T ss_pred CCCCCCEEEEEEECCCEEEC----CCCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 88411136888817823763----7767898999999985678858997578
No 22
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=47.95 E-value=23 Score=16.73 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCC------C-CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEE
Q ss_conf 89999999970898799971111343------4-5668963899921477434568985999018898876323798459
Q gi|254780957|r 29 SSDLKRFKSLTTGNPVVMGYRTFQSI------G-RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKI 101 (176)
Q Consensus 29 ~~Dl~~Fk~~T~~~~vimGrkT~~sl------~-~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i 101 (176)
++.|.-|-+.-.=..||=--.-|..- . -.--+-..+-+.| +.+.....+....+.|+++|.+.+.+...+.|
T Consensus 53 ~~~m~~~i~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipyiR~eR-p~~~~~~~d~~~~v~s~~ea~~~l~~~~~~~V 131 (246)
T pfam02571 53 ADGLAAYLREEGIDAVIDATHPFAAQISRNAAAACKELGVPLLRLER-PAWQPGPGDRWIYVDSLAEAAAALAELPGKRV 131 (246)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECC-CCCCCCCCCCEEEECCHHHHHHHHHHCCCCEE
T ss_conf 99999999977997999899996899999999999985996899606-21267889877997999999998764678658
Q ss_pred EEECHHHHHHHHHHHCCEEEEEEECCCCCCCEEC
Q ss_conf 9971088998742005899998773862784766
Q gi|254780957|r 102 FIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFF 135 (176)
Q Consensus 102 ~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~f 135 (176)
|+--|.+-...|....+.-.+-||-...+.+.-|
T Consensus 132 llttG~k~L~~f~~~~~~~~~~RvLp~~~~~~g~ 165 (246)
T pfam02571 132 FLTTGRQELAAFAALPQHRLLARVLPPPEAALGF 165 (246)
T ss_pred EEEECCCCHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 9840502389985385775999966886544799
No 23
>PRK00536 speE spermidine synthase; Provisional
Probab=46.65 E-value=15 Score=17.77 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=31.7
Q ss_pred HHCCCCCCEEEEECH--HHHHHHHHHHCCEEEEEEECCCC--CCCEECCCCC
Q ss_conf 632379845999710--88998742005899998773862--7847665789
Q gi|254780957|r 92 LASKTGSKKIFIIGG--GEIYAQTISLAHTLYITHIEKEI--EGDVFFPSID 139 (176)
Q Consensus 92 ~~~~~~~~~i~IIGG--~~IY~~~l~~~d~l~iT~I~~~~--egD~~fP~id 139 (176)
.+....-++|.|||| +.+-++.+.+-.++.+-+||... -|-.|||.+.
T Consensus 67 l~~Hp~Pk~VLIIGGGDGG~~REvlKH~~~v~~VEID~~Vv~~sk~ylP~~~ 118 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred HHCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCHHHH
T ss_conf 3218997879998687559999987289766999967899999999785656
No 24
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.45 E-value=25 Score=16.59 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=14.3
Q ss_pred CHHHHHHHHCCCCCCEEEEECHH---HHHHHHHH
Q ss_conf 18898876323798459997108---89987420
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGG---EIYAQTIS 115 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~---~IY~~~l~ 115 (176)
+++.++..++..+..-+||.||. .-|..+++
T Consensus 336 N~~a~~~Al~~~~~~iilI~GG~~K~~d~~~l~~ 369 (459)
T PRK02705 336 NYDAAEVGLKAVPGPIILIAGGEAKQGDDSAWLK 369 (459)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 9899999998289986999567666787399999
No 25
>PRK00811 spermidine synthase; Provisional
Probab=44.32 E-value=14 Score=18.12 Aligned_cols=51 Identities=22% Similarity=0.569 Sum_probs=33.4
Q ss_pred HCCCCCCEEEEECHH--HHHHHHHH--HCCEEEEEEECCCC--CCCEECCCCCHHHE
Q ss_conf 323798459997108--89987420--05899998773862--78476657895560
Q gi|254780957|r 93 ASKTGSKKIFIIGGG--EIYAQTIS--LAHTLYITHIEKEI--EGDVFFPSIDSNIW 143 (176)
Q Consensus 93 ~~~~~~~~i~IIGG~--~IY~~~l~--~~d~l~iT~I~~~~--egD~~fP~id~~~~ 143 (176)
+....-++|.||||+ .+-++.+. -+.++.+-+|+... -|-.|||+++...|
T Consensus 74 ~~h~~pk~VLIiGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~ 130 (283)
T PRK00811 74 LAHPNPKKVLIIGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAW 130 (283)
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 738997748995687479999984278856799994689999999998388631330
No 26
>TIGR01111 mtrA tetrahydromethanopterin S-methyltransferase, subunit A; InterPro: IPR005778 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane.
Probab=43.18 E-value=18 Score=17.43 Aligned_cols=28 Identities=25% Similarity=0.686 Sum_probs=24.2
Q ss_pred CCCCEEEECCCCCC--CCHHH-HHHHHHHHC
Q ss_conf 17976856267687--78899-999999708
Q gi|254780957|r 13 TRNNVIGSCGGMPW--KISSD-LKRFKSLTT 40 (176)
Q Consensus 13 ~~n~~IG~~~~lPW--~~~~D-l~~Fk~~T~ 40 (176)
|+++.||-.|.+|+ .+|+| ..|||++..
T Consensus 105 D~~~IiGA~GAIPY~EN~n~eAveRF~~Q~V 135 (246)
T TIGR01111 105 DDGRIIGAKGAIPYLENINEEAVERFRKQIV 135 (246)
T ss_pred CCCCEECCCCCCCCEECCCHHHHHHHHHHHH
T ss_conf 8885302336765101687678899864131
No 27
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=43.16 E-value=28 Score=16.29 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=34.1
Q ss_pred HHCCCEEEEEECCCCCCCCCCCC-----CEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHH
Q ss_conf 70898799971111343456689-----63899921477434568985999018898876323798459997108
Q gi|254780957|r 38 LTTGNPVVMGYRTFQSIGRLLPG-----RTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGG 107 (176)
Q Consensus 38 ~T~~~~vimGrkT~~sl~~pLp~-----R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~ 107 (176)
|++++++|.||-|=+.-=|.+++ +..+-+.|....+...--.+.......+.+...... ...|+|.|--
T Consensus 1 msmN~V~LiGrLg~DpElr~t~sG~~v~~fslAv~~~~k~~~t~w~~v~~wgk~Ae~~~~yl~K-G~~V~V~G~l 74 (121)
T PRK07459 1 MSLNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKTAQVAADYVKK-GSLIGITGSL 74 (121)
T ss_pred CCEEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHCC-CCEEEEEEEE
T ss_conf 9701899999667696188979997899999984675357787499999989089999887368-9899999998
No 28
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=42.52 E-value=28 Score=16.23 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=21.8
Q ss_pred CCCCC-EEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 37984-5999710889------987420058999987
Q gi|254780957|r 95 KTGSK-KIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 95 ~~~~~-~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
+.+.+ -++|+||+.+ .+..+..+|++.++=
T Consensus 187 ~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigG 223 (395)
T COG0126 187 ENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGG 223 (395)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEECC
T ss_conf 3999865999606500008999999997517588652
No 29
>PRK09799 putative selenate reductase subunit YgfM; Provisional
Probab=41.67 E-value=17 Score=17.53 Aligned_cols=10 Identities=10% Similarity=-0.170 Sum_probs=4.5
Q ss_pred EEEEEECCCC
Q ss_conf 7999711113
Q gi|254780957|r 43 PVVMGYRTFQ 52 (176)
Q Consensus 43 ~vimGrkT~~ 52 (176)
++++|=-|..
T Consensus 25 a~~laGGt~L 34 (258)
T PRK09799 25 AVWFAGGSKL 34 (258)
T ss_pred CEEECCCCCH
T ss_conf 7897488746
No 30
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.67 E-value=29 Score=16.15 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCEEEE-----CCHHHHHHHHCCCCCC-EEEEECH
Q ss_conf 668963899921477434568985999-----0188988763237984-5999710
Q gi|254780957|r 57 LLPGRTNIIITRDNTRRASVNPEAVLA-----SSILDSLDLASKTGSK-KIFIIGG 106 (176)
Q Consensus 57 pLp~R~niVlTr~~~~~~~~~~~~~~~-----~s~~~al~~~~~~~~~-~i~IIGG 106 (176)
+||.|.-+|-+.+ ++.++ ++++.++..++....+ -+||.||
T Consensus 309 glpHRlE~v~~~~---------gv~fiNDSKATN~~a~~~AL~~f~~~~iilI~GG 355 (468)
T PRK04690 309 PLPNRLQELGSVD---------GITYVNDSISTTPHASLAALDCFAGRRVALLVGG 355 (468)
T ss_pred CCCCCEEEEEEEC---------CEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9997527999989---------9999737877898999999972766857999736
No 31
>PRK00103 SPOUT methyltransferase superfamily protein; Provisional
Probab=39.61 E-value=21 Score=16.99 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=21.5
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHH-HHHCCEE
Q ss_conf 18898876323798459997108899874-2005899
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQT-ISLAHTL 120 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~-l~~~d~l 120 (176)
.+.+.++.+...+.+-+|||||+.=..+. ...+|..
T Consensus 84 ~fa~~l~~~~~~g~~i~FiIGGa~G~~~~~~~~a~~~ 120 (156)
T PRK00103 84 QFAKELERWRLDGRDVTFVIGGPEGLSPAVKKRADQS 120 (156)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHE
T ss_conf 9999999998639966999978887698999743228
No 32
>TIGR00600 rad2 DNA excision repair protein (rad2); InterPro: IPR001044 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XPGC, an acidic protein that confers normal UV resistance in expressing cells, can correct XP-G. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms. XPGC cleaves one strand of the duplex at the border with the single-stranded region , .; GO: 0003697 single-stranded DNA binding, 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=39.47 E-value=7.6 Score=19.56 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=33.8
Q ss_pred CCCCEEEEECHHHHHHHHHH--HCCEEEEEE--------------------------------------ECCCCCCCEEC
Q ss_conf 79845999710889987420--058999987--------------------------------------73862784766
Q gi|254780957|r 96 TGSKKIFIIGGGEIYAQTIS--LAHTLYITH--------------------------------------IEKEIEGDVFF 135 (176)
Q Consensus 96 ~~~~~i~IIGG~~IY~~~l~--~~d~l~iT~--------------------------------------I~~~~egD~~f 135 (176)
+.+.+||+.||..||+-+++ ..-|+|.-. |-++|.|++.=
T Consensus 899 TDDSDvfLFGa~~vYkN~F~~nkfVEyY~~~d~~~~LGldr~~LI~LA~LLGSDYT~Gl~~vG~V~A~EiL~EFPG~gLe 978 (1127)
T TIGR00600 899 TDDSDVFLFGARHVYKNFFNQNKFVEYYQYEDIHNQLGLDRNKLINLAYLLGSDYTEGLPTVGPVSAMEILNEFPGDGLE 978 (1127)
T ss_pred ECCCCEEECCCCEEECCCCCCCCCEEECCHHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHCCCCCCCH
T ss_conf 43732210177231100025786254015799998728888899999875142443578866404466555238786401
Q ss_pred CCCCHHHEEE
Q ss_conf 5789556089
Q gi|254780957|r 136 PSIDSNIWKK 145 (176)
Q Consensus 136 P~id~~~~~~ 145 (176)
|.+....|-.
T Consensus 979 ~L~~Fk~W~~ 988 (1127)
T TIGR00600 979 PLLKFKEWWH 988 (1127)
T ss_pred HHHHHHHHHH
T ss_conf 3445689997
No 33
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=39.01 E-value=32 Score=15.90 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=20.8
Q ss_pred CEEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 45999710889------987420058999987
Q gi|254780957|r 99 KKIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 99 ~~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
.-++|+||+.| .+.+++.+|.+.++=
T Consensus 209 P~~aIlGGaKisdKi~vi~~ll~k~D~iiigG 240 (419)
T PTZ00005 209 PFLAILGGAKVKDKIQLIKNLLDKVDEMIIGG 240 (419)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCEEEECC
T ss_conf 83899648873427999998997278699772
No 34
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=36.56 E-value=35 Score=15.67 Aligned_cols=29 Identities=14% Similarity=0.408 Sum_probs=21.7
Q ss_pred CCCCC-EEEEECHHHH------HHHHHHHCCEEEEE
Q ss_conf 37984-5999710889------98742005899998
Q gi|254780957|r 95 KTGSK-KIFIIGGGEI------YAQTISLAHTLYIT 123 (176)
Q Consensus 95 ~~~~~-~i~IIGG~~I------Y~~~l~~~d~l~iT 123 (176)
+.+.+ -+.|+||+.| .+.+++.+|.+.+.
T Consensus 184 ~~p~rP~~aIiGGAKIsdKI~vi~~Ll~kvD~IiiG 219 (653)
T PRK13962 184 ENPERPYVVILGGAKVSDKIGVITNLLEKVDKILIG 219 (653)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEC
T ss_conf 298987399980787205899999999878999982
No 35
>PRK10444 UMP phosphatase; Provisional
Probab=34.94 E-value=38 Score=15.52 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=43.4
Q ss_pred ECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC-----------CCCCCE
Q ss_conf 717976856267687788999999997089879997111134345668963899921477434-----------568985
Q gi|254780957|r 12 ITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRA-----------SVNPEA 80 (176)
Q Consensus 12 ~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~-----------~~~~~~ 80 (176)
.|-+|+|=.++.+--...+=+++.++. |. ..+.||.++.... -..+.-
T Consensus 6 ~DlDGvl~~g~~~ipga~e~l~~L~~~--g~-------------------~~~fvTNnss~s~~~~~~kL~~~Gl~v~~~ 64 (248)
T PRK10444 6 CDIDGVLMHDNVAVPGAAEFLHRILEK--GL-------------------PLVLLTNYPSQTGQDLANRFATAGVDVPDS 64 (248)
T ss_pred ECCCCEEEECCEECCCHHHHHHHHHHC--CC-------------------EEEEEECCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 907561388998486999999999987--99-------------------299993899999999999999779999907
Q ss_pred EEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 9990188988763237984599971088998742
Q gi|254780957|r 81 VLASSILDSLDLASKTGSKKIFIIGGGEIYAQTI 114 (176)
Q Consensus 81 ~~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l 114 (176)
.++.+...+.+++++...+.+|++|...+.+++-
T Consensus 65 ~i~ts~~~~~~~L~~~~~~~~~viG~~~l~~~l~ 98 (248)
T PRK10444 65 VFYTSAMATADFLRRQEGKKAYVVGEGALIHELY 98 (248)
T ss_pred EEECHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 3985999999999847898799989888877898
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=34.89 E-value=25 Score=16.59 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=8.0
Q ss_pred HHHHHHHCCCCCCEEEEECH
Q ss_conf 89887632379845999710
Q gi|254780957|r 87 LDSLDLASKTGSKKIFIIGG 106 (176)
Q Consensus 87 ~~al~~~~~~~~~~i~IIGG 106 (176)
.++........-++.-=|||
T Consensus 85 ~~a~~~i~~~qIRN~gTiGG 104 (257)
T TIGR03312 85 KEALGFVYSRHIRNQATIGG 104 (257)
T ss_pred HHHHHHHCCHHHCCCEEEEE
T ss_conf 99998655786512104434
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=33.64 E-value=40 Score=15.39 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCCCEEEECCHHHHHHHH---CCCCCCEEEEECHHHHHH---HHHHHCCEEEEEEECC
Q ss_conf 689859990188988763---237984599971088998---7420058999987738
Q gi|254780957|r 76 VNPEAVLASSILDSLDLA---SKTGSKKIFIIGGGEIYA---QTISLAHTLYITHIEK 127 (176)
Q Consensus 76 ~~~~~~~~~s~~~al~~~---~~~~~~~i~IIGG~~IY~---~~l~~~d~l~iT~I~~ 127 (176)
..++++...+++++.... .....+++.||||+-|=- +++.... .-+|.|..
T Consensus 112 ~~~~V~~lr~~~Da~~i~~~l~~~~~k~vvViGgG~IGlE~A~~l~~~G-~~Vtvve~ 168 (427)
T TIGR03385 112 NLDITFTLRNLEDTDAIKQYIDANKVDRVVIIGGGYIGLEMVEALRERG-KNVTLIHR 168 (427)
T ss_pred CCCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEE
T ss_conf 7898899799999999999875079988999996399999999999769-98999984
No 38
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=31.49 E-value=43 Score=15.18 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=36.5
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCEEEE-------CCHHHHHHHHCC-CCCCEEEEECHH-------HHH---HHHHHHCC
Q ss_conf 668963899921477434568985999-------018898876323-798459997108-------899---87420058
Q gi|254780957|r 57 LLPGRTNIIITRDNTRRASVNPEAVLA-------SSILDSLDLASK-TGSKKIFIIGGG-------EIY---AQTISLAH 118 (176)
Q Consensus 57 pLp~R~niVlTr~~~~~~~~~~~~~~~-------~s~~~al~~~~~-~~~~~i~IIGG~-------~IY---~~~l~~~d 118 (176)
++|.|.-+|-+.+ ++.++ .++..+++.+.+ .+.++++++-.. ..+ .+++..+|
T Consensus 311 Gv~~R~E~v~~~~---------gv~~idDYAH~P~~i~a~l~alr~~~~~~rii~vfqPh~~sR~~~~~~e~a~~l~~aD 381 (459)
T PRK00421 311 GVKRRFEEKGEVN---------GVVLIDDYAHHPTEIKATLKAARQKYPDKRIVAVFQPHRYSRTRDLFDEFAEVLSDAD 381 (459)
T ss_pred CCCEEEEEEEECC---------CEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 7450279987228---------8479973568938999999999987689966999867420548999999999987199
Q ss_pred EEEEEEECCCCC
Q ss_conf 999987738627
Q gi|254780957|r 119 TLYITHIEKEIE 130 (176)
Q Consensus 119 ~l~iT~I~~~~e 130 (176)
++++|.++...|
T Consensus 382 ~vil~~iy~a~E 393 (459)
T PRK00421 382 EVILLDIYAAGE 393 (459)
T ss_pred EEEECCCCCCCC
T ss_conf 999888758888
No 39
>KOG4842 consensus
Probab=30.78 E-value=28 Score=16.31 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHC-----CCEEEEEECCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCEEEE
Q ss_conf 778899999999708-----987999711113434-5668963899921477434568985999
Q gi|254780957|r 26 WKISSDLKRFKSLTT-----GNPVVMGYRTFQSIG-RLLPGRTNIIITRDNTRRASVNPEAVLA 83 (176)
Q Consensus 26 W~~~~Dl~~Fk~~T~-----~~~vimGrkT~~sl~-~pLp~R~niVlTr~~~~~~~~~~~~~~~ 83 (176)
|..|-|-++|+.+-+ |-.-+||..+|.+-- .-|-+|.|.++++.+....+.+.|+.+.
T Consensus 124 lqgPhd~rfl~~L~~Lrad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG~i~l 187 (278)
T KOG4842 124 LQGPHDKRFLNKLDELRADQGIIEQMGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQGVIVL 187 (278)
T ss_pred HCCCCHHHHHHHHHHHHHCHHHHHHHCCCCEECHHHHHCCCCCCEEECCCCCEEECCCCCEEEE
T ss_conf 2487708999999987625417877332201200123216654303447641100046534887
No 40
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.81 E-value=46 Score=15.01 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=24.4
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHH
Q ss_conf 5668963899921477434568985999018898876323798459997108
Q gi|254780957|r 56 RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGG 107 (176)
Q Consensus 56 ~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~ 107 (176)
++||.|.-+|-+.+--...+ -...++++.++..++.....-+||.||.
T Consensus 353 ~GlpHR~E~V~~~~gv~~iN----DSKaTN~~at~~Al~s~~~~iilI~GG~ 400 (501)
T PRK02006 353 RGEPHRVEVIATIDDVDYVD----DSKGTNVGATVAALDGLAQRVVLIAGGD 400 (501)
T ss_pred CCCCCCEEEEEEECCEEEEC----CCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 78765258999967889973----7877898999999970789749998057
No 41
>TIGR02627 rhamnulo_kin rhamnulokinase; InterPro: IPR013449 Rhamnulokinase (2.7.1.5 from EC) is an enzyme that catalyzes the second step in rhamnose catabolism.; GO: 0008993 rhamnulokinase activity, 0019301 rhamnose catabolic process.
Probab=29.36 E-value=39 Score=15.45 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=10.7
Q ss_pred CCCCCCEEEEECHHHHH
Q ss_conf 23798459997108899
Q gi|254780957|r 94 SKTGSKKIFIIGGGEIY 110 (176)
Q Consensus 94 ~~~~~~~i~IIGG~~IY 110 (176)
...+-+.++|+||++=-
T Consensus 390 ~g~~i~~LhIVGGGs~n 406 (460)
T TIGR02627 390 RGKPISQLHIVGGGSQN 406 (460)
T ss_pred CCCCCCEEEEECCCHHH
T ss_conf 26885514686175144
No 42
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=29.29 E-value=47 Score=14.96 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECH---HHHHHHHHHHCCEE
Q ss_conf 566896389992147743456898599901889887632379845999710---88998742005899
Q gi|254780957|r 56 RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGG---GEIYAQTISLAHTL 120 (176)
Q Consensus 56 ~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG---~~IY~~~l~~~d~l 120 (176)
+++|.|.-+|=+.|--...+ +.-+..+.+...||.-+.... +-+||+|| +.=|..+.+.+..-
T Consensus 328 ~~~~HRlE~~~~~~G~~f~N-DSKATn~~At~~AL~~~~~~~-~~~LI~GG~~KG~df~~L~~~~~~~ 393 (476)
T TIGR01087 328 KGLPHRLEYVGQKNGVHFIN-DSKATNVHATLAALSALKNPK-RVILIVGGDDKGADFSPLAPALKKK 393 (476)
T ss_pred CCCCCCEEEEEECCCEEEEE-CCCCCCHHHHHHHHHHCCCCC-EEEEEEECCCCCCCHHHHHHHHCCC
T ss_conf 79876268877728547982-562121899999998479997-1899960346899848999984365
No 43
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=28.59 E-value=48 Score=14.89 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=35.4
Q ss_pred CCCCEEEECCHHHHHHH---HCCCCCCEEEEECHHHHHHH---HHHHCCEEEEEEECCCCCCCEECCCCCH
Q ss_conf 68985999018898876---32379845999710889987---4200589999877386278476657895
Q gi|254780957|r 76 VNPEAVLASSILDSLDL---ASKTGSKKIFIIGGGEIYAQ---TISLAHTLYITHIEKEIEGDVFFPSIDS 140 (176)
Q Consensus 76 ~~~~~~~~~s~~~al~~---~~~~~~~~i~IIGG~~IY~~---~l~~~d~l~iT~I~~~~egD~~fP~id~ 140 (176)
..++++...+++++... +.....+++.||||+-|=-+ ++.... .-+|.|+.. |..+|.+|.
T Consensus 123 ~~~~v~~lr~~~Da~~i~~~~~~~~~k~vvIIGgG~IGlE~A~~l~~~G-~~Vtlie~~---~~~~~~~d~ 189 (438)
T PRK13512 123 ESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERG-LHPTLIHRS---DKINKLMDA 189 (438)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEEC---CCCCCCCCH
T ss_conf 8998799799999999999886179977999895589999999999729-908999935---731200499
No 44
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=28.18 E-value=49 Score=14.85 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=44.2
Q ss_pred CEEEEEECCCCCCCC---CCCCCEEEEEEECCCCC-----------CCCCCCEEE---------ECCHHHHHHHHCCCCC
Q ss_conf 879997111134345---66896389992147743-----------456898599---------9018898876323798
Q gi|254780957|r 42 NPVVMGYRTFQSIGR---LLPGRTNIIITRDNTRR-----------ASVNPEAVL---------ASSILDSLDLASKTGS 98 (176)
Q Consensus 42 ~~vimGrkT~~sl~~---pLp~R~niVlTr~~~~~-----------~~~~~~~~~---------~~s~~~al~~~~~~~~ 98 (176)
..+++|+...+.+|. .+-.|+.+|+|...-.+ ....-.+.+ ...++++++.+.+.+.
T Consensus 10 t~i~fG~g~~~~l~~~~~~~G~k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~ 89 (383)
T PRK09860 10 SVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNC 89 (383)
T ss_pred CCEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 81498838999999999982998799982845665746999999998769958996895279699999999999987399
Q ss_pred CEEEEECHHHHHHHHH
Q ss_conf 4599971088998742
Q gi|254780957|r 99 KKIFIIGGGEIYAQTI 114 (176)
Q Consensus 99 ~~i~IIGG~~IY~~~l 114 (176)
+-|.=+||+++...+-
T Consensus 90 D~ivavGGGS~iD~AK 105 (383)
T PRK09860 90 DSVISLGGGSPHDCAK 105 (383)
T ss_pred CEEEEECCCCHHHHHH
T ss_conf 9999938962267899
No 45
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=27.63 E-value=50 Score=14.79 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=24.5
Q ss_pred ECCHHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 90188988763237984599971088998742
Q gi|254780957|r 83 ASSILDSLDLASKTGSKKIFIIGGGEIYAQTI 114 (176)
Q Consensus 83 ~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l 114 (176)
..+++++++.+.+.+.+-|.=|||+++...+-
T Consensus 65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK 96 (312)
T pfam00465 65 LEEVDEAAAAAREEGADVIIAVGGGSVIDTAK 96 (312)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
T ss_conf 99999999999964998999808976124999
No 46
>PRK03612 spermidine synthase; Provisional
Probab=27.56 E-value=50 Score=14.78 Aligned_cols=68 Identities=16% Similarity=0.297 Sum_probs=36.6
Q ss_pred EEEEEEECCCCCCCCCCCEEEECCHHHHH-----H---HHCCCCCCEEEEECHHH--HHHHHHHH--CCEEEEEEECCCC
Q ss_conf 38999214774345689859990188988-----7---63237984599971088--99874200--5899998773862
Q gi|254780957|r 62 TNIIITRDNTRRASVNPEAVLASSILDSL-----D---LASKTGSKKIFIIGGGE--IYAQTISL--AHTLYITHIEKEI 129 (176)
Q Consensus 62 ~niVlTr~~~~~~~~~~~~~~~~s~~~al-----~---~~~~~~~~~i~IIGG~~--IY~~~l~~--~d~l~iT~I~~~~ 129 (176)
..||+|+......-.-.+...+++.+|.. - .+.....+++.||||+. .-++.+.+ ++++.+-+++.+.
T Consensus 250 Q~IvvT~~~~~~rLyLdG~lQ~s~~DE~~YhE~LvHp~m~~~~~p~~VLiiGGGdG~a~revLk~~~ve~v~lVelD~~v 329 (516)
T PRK03612 250 QRIVVTRRGDDLRLYLNGRLQFSSRDEYRYHEALVHPALAASPRARRVLILGGGDGLALREVLKYPDVEQVTLVDLDPAV 329 (516)
T ss_pred EEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf 18999803796489988923357864888776340402156999773899837760879998648996637899518899
No 47
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.47 E-value=51 Score=14.77 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=12.1
Q ss_pred CCHHHHHHHHCCCCCCEEEEECHH
Q ss_conf 018898876323798459997108
Q gi|254780957|r 84 SSILDSLDLASKTGSKKIFIIGGG 107 (176)
Q Consensus 84 ~s~~~al~~~~~~~~~~i~IIGG~ 107 (176)
++++..+..+.....+-+||+||.
T Consensus 336 Tn~~s~~~AL~~~~~~iilI~GG~ 359 (458)
T PRK01710 336 SSPTRTLAGLNAFEKPVILIAGGY 359 (458)
T ss_pred CCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 898999999971677729996465
No 48
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=27.31 E-value=37 Score=15.58 Aligned_cols=51 Identities=20% Similarity=0.534 Sum_probs=37.4
Q ss_pred HHHHCCCCCCEEEEECH--HHHHHHHH--HHCCEEEEEEECCCC-C-CCEECCCCCH
Q ss_conf 87632379845999710--88998742--005899998773862-7-8476657895
Q gi|254780957|r 90 LDLASKTGSKKIFIIGG--GEIYAQTI--SLAHTLYITHIEKEI-E-GDVFFPSIDS 140 (176)
Q Consensus 90 l~~~~~~~~~~i~IIGG--~~IY~~~l--~~~d~l~iT~I~~~~-e-gD~~fP~id~ 140 (176)
+.++...+-++|-|||| +.+.++-+ +-+.++.|=.||..+ + |=-|+|.+..
T Consensus 68 vpL~~H~NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~ 124 (284)
T TIGR00417 68 VPLFAHPNPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAA 124 (284)
T ss_pred HHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHC
T ss_conf 565368988547899638884687887559816799997274789998882612105
No 49
>pfam02590 SPOUT_MTase Predicted SPOUT methyltransferase. This family of proteins are predicted to be SPOUT methyltransferases.
Probab=27.18 E-value=45 Score=15.09 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=19.0
Q ss_pred CHHHHHHHHCCCCC-CEEEEECHHHHHHHH-HHHCCE
Q ss_conf 18898876323798-459997108899874-200589
Q gi|254780957|r 85 SILDSLDLASKTGS-KKIFIIGGGEIYAQT-ISLAHT 119 (176)
Q Consensus 85 s~~~al~~~~~~~~-~~i~IIGG~~IY~~~-l~~~d~ 119 (176)
++.+.+..+...+. +-+|||||+.=.... +..+|.
T Consensus 84 ~fa~~i~~~~~~g~~~i~FiIGGa~G~~~~~~~~a~~ 120 (155)
T pfam02590 84 EFAKLLEDLRLKGKSDITFVIGGSDGLSEEVLKRANE 120 (155)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 9999999998338975599983798869899975666
No 50
>pfam04263 TPK_catalytic Thiamin pyrophosphokinase, catalytic domain. Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=26.74 E-value=52 Score=14.69 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.1
Q ss_pred ECCHHHHHHHHCCCCCCEEEEECHH
Q ss_conf 9018898876323798459997108
Q gi|254780957|r 83 ASSILDSLDLASKTGSKKIFIIGGG 107 (176)
Q Consensus 83 ~~s~~~al~~~~~~~~~~i~IIGG~ 107 (176)
.++++-|+.++.+.+.++|.|+||-
T Consensus 69 ~TD~ekAl~~~~~~~~~~i~i~G~~ 93 (122)
T pfam04263 69 DTDLELALDEALELGADEIVILGAL 93 (122)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 5689999999997799989998888
No 51
>KOG2520 consensus
Probab=26.51 E-value=40 Score=15.36 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=18.9
Q ss_pred CCCCEEEEECHHHHHHHHHHHCCEE
Q ss_conf 7984599971088998742005899
Q gi|254780957|r 96 TGSKKIFIIGGGEIYAQTISLAHTL 120 (176)
Q Consensus 96 ~~~~~i~IIGG~~IY~~~l~~~d~l 120 (176)
..+.+||..||..||+.++..-..+
T Consensus 507 TDDSDV~LFGg~~VYrn~F~knk~v 531 (815)
T KOG2520 507 TDDSDVFLFGGTRVYRNFFNKNKYV 531 (815)
T ss_pred CCCCCCEEECCCHHHHHHHHCCCCC
T ss_conf 2561002206502348776257510
No 52
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=26.43 E-value=53 Score=14.66 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.1
Q ss_pred CCCCCEEEEEEE
Q ss_conf 668963899921
Q gi|254780957|r 57 LLPGRTNIIITR 68 (176)
Q Consensus 57 pLp~R~niVlTr 68 (176)
++|.|.-+|-.+
T Consensus 307 gl~HR~e~v~~~ 318 (448)
T COG0771 307 GLPHRLEFVGEK 318 (448)
T ss_pred CCCCCEEEEEEC
T ss_conf 998622798861
No 53
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the bacterial proteins..
Probab=26.10 E-value=54 Score=14.62 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCCCCEEEEECHHHHHH
Q ss_conf 88988763237984599971088998
Q gi|254780957|r 86 ILDSLDLASKTGSKKIFIIGGGEIYA 111 (176)
Q Consensus 86 ~~~al~~~~~~~~~~i~IIGG~~IY~ 111 (176)
+.+-++.+.+.+.+=--||||+-|++
T Consensus 30 iA~eik~~~~~G~evgIViGGGNIfR 55 (236)
T TIGR02075 30 IANEIKEVVKKGIEVGIVIGGGNIFR 55 (236)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 99999999867948999977827887
No 54
>KOG0538 consensus
Probab=25.65 E-value=55 Score=14.57 Aligned_cols=85 Identities=20% Similarity=0.342 Sum_probs=51.1
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-CCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCC
Q ss_conf 267687788999999997089879997111134345668-9638999214774345689859990188988763237984
Q gi|254780957|r 21 CGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLP-GRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSK 99 (176)
Q Consensus 21 ~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp-~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~ 99 (176)
+-.+-| +|++|+|.+|..-+|+=|=-|=|.--+... |-.-||+|..-..+.+..| -....+.+.++.... .=
T Consensus 207 d~Sl~W---~Di~wLr~~T~lPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vp--AtI~~L~Evv~aV~~--ri 279 (363)
T KOG0538 207 DPSLSW---KDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVP--ATIEALPEVVKAVEG--RI 279 (363)
T ss_pred CCCCCH---HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCC--CHHHHHHHHHHHHCC--CE
T ss_conf 877774---24699985275876998311438799999808865998578753257664--118879999998628--54
Q ss_pred EEEEECHH----HHHHH
Q ss_conf 59997108----89987
Q gi|254780957|r 100 KIFIIGGG----EIYAQ 112 (176)
Q Consensus 100 ~i~IIGG~----~IY~~ 112 (176)
+||+-||. .|.+.
T Consensus 280 ~V~lDGGVR~G~DVlKA 296 (363)
T KOG0538 280 PVFLDGGVRRGTDVLKA 296 (363)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 79972673354279999
No 55
>pfam06189 5-nucleotidase 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).
Probab=25.62 E-value=34 Score=15.74 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEE
Q ss_conf 389992147743456898599901889887632379845999710889987420058999987
Q gi|254780957|r 62 TNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITH 124 (176)
Q Consensus 62 ~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~ 124 (176)
..|+||||... -+..+++|++. . ..+-.....+||.+.|...-++--.|+||.
T Consensus 37 EVVllSRNs~d-----tGlRvfnSI~h----y-gL~I~Ra~Ft~G~sp~~Yl~af~~~LFLS~ 89 (263)
T pfam06189 37 EVVLLSRNSAD-----TGLRVFNSINH----Y-GLDITRAAFTGGESPYRYLKAFNADLFLSA 89 (263)
T ss_pred EEEEEECCCCH-----HHHHHHHHHHH----C-CCCCCEEEECCCCCHHHHHHHHCCCEEEEC
T ss_conf 99997068833-----47899998997----2-987313554189882666776078468668
No 56
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=24.56 E-value=57 Score=14.45 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=21.3
Q ss_pred CCCC-EEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 7984-5999710889------987420058999987
Q gi|254780957|r 96 TGSK-KIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 96 ~~~~-~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
.+.+ -+.|+||+.| .+.+++.+|.+.+.=
T Consensus 183 ~p~~P~~aIiGGaKisdKi~~i~~l~~k~D~iiigG 218 (391)
T PRK00073 183 NPERPFVAILGGAKVSDKIGVLENLLKKVDKLIIGG 218 (391)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECC
T ss_conf 888872899827858878999999998588888772
No 57
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.43 E-value=58 Score=14.44 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=20.4
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHC-CCCCCEEEEECHH
Q ss_conf 566896389992147743456898599901889887632-3798459997108
Q gi|254780957|r 56 RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLAS-KTGSKKIFIIGGG 107 (176)
Q Consensus 56 ~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~-~~~~~~i~IIGG~ 107 (176)
++||.|.-+|-+.+--...+ ..-+.-+.+...|++-+. ....+-+||.||.
T Consensus 304 ~Gl~hR~E~v~~~~Gv~fiN-DSKaTN~~at~~Al~~~~~~~~~~iilI~GG~ 355 (448)
T PRK03803 304 KGLEHRCQWVREVDGVRYYN-DSKGTNVGATLAAIEGLGADIEGKLVLIAGGQ 355 (448)
T ss_pred CCCCEEEEEEEECCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 57120579999618889996-89989978999999964652368689993786
No 58
>cd06553 ASCH_Ef3133_like ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=24.41 E-value=39 Score=15.41 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=29.9
Q ss_pred CEEEEEECCC--------CCCCCCCC--CCEEEEEEECCCCCCC---CCCCEEEECCHHHHHHHHCCCCC
Q ss_conf 8799971111--------34345668--9638999214774345---68985999018898876323798
Q gi|254780957|r 42 NPVVMGYRTF--------QSIGRLLP--GRTNIIITRDNTRRAS---VNPEAVLASSILDSLDLASKTGS 98 (176)
Q Consensus 42 ~~vimGrkT~--------~sl~~pLp--~R~niVlTr~~~~~~~---~~~~~~~~~s~~~al~~~~~~~~ 98 (176)
.-|+-|+||= +.-+.||| |+.+|||..+-.+..- ..-....+.++.+....++..++
T Consensus 18 ~LVl~G~KtAT~s~~~~y~~e~e~lP~vG~~~Ivld~~g~P~~ii~tt~V~~~pf~~V~~e~A~~EGEgD 87 (127)
T cd06553 18 ALVLAGKKTATCSALALYEAEEEPLPKVGDYSIILDGQGKPVCIIETTEVEVVPFNDVTEEFAYAEGEGD 87 (127)
T ss_pred HHHHCCCEEEEECCHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEECCCCCHHHHHHHCCCC
T ss_conf 9997498279961887883079989987888899859998799999999999970246989999858998
No 59
>pfam08538 DUF1749 Protein of unknown function (DUF1749). This is a plant and fungal family of unknown function. This family contains many hypothetical proteins.
Probab=24.28 E-value=58 Score=14.42 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=14.6
Q ss_pred HHHHHHH-----HCCCEEEEEECC
Q ss_conf 9999997-----089879997111
Q gi|254780957|r 32 LKRFKSL-----TTGNPVVMGYRT 50 (176)
Q Consensus 32 l~~Fk~~-----T~~~~vimGrkT 50 (176)
.+|+|.. -.+++||||.-|
T Consensus 95 v~Ylr~~~~~~~~~~kIVLMGHST 118 (303)
T pfam08538 95 VEYLRTTKGGTFGRRKIVLMGHST 118 (303)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 999986056767886289984587
No 60
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=24.16 E-value=58 Score=14.41 Aligned_cols=22 Identities=9% Similarity=0.404 Sum_probs=13.0
Q ss_pred CHHHHHHHHCCCCCCEEEEECH
Q ss_conf 1889887632379845999710
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGG 106 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG 106 (176)
|...|++.+...+.+.|.|+|.
T Consensus 339 Sm~aal~~l~~~~~~ki~VLGd 360 (452)
T PRK10773 339 SMTAAVQVLAEMPGYRVLVVGD 360 (452)
T ss_pred HHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999999997577976999877
No 61
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=24.15 E-value=58 Score=14.40 Aligned_cols=89 Identities=17% Similarity=0.314 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHCCCEEEE---E-ECCCCCCCCCCCC-CEEEEEEECCCCCC--------CCCCCEEEEC--CHHHHHHH
Q ss_conf 8899999999708987999---7-1111343456689-63899921477434--------5689859990--18898876
Q gi|254780957|r 28 ISSDLKRFKSLTTGNPVVM---G-YRTFQSIGRLLPG-RTNIIITRDNTRRA--------SVNPEAVLAS--SILDSLDL 92 (176)
Q Consensus 28 ~~~Dl~~Fk~~T~~~~vim---G-rkT~~sl~~pLp~-R~niVlTr~~~~~~--------~~~~~~~~~~--s~~~al~~ 92 (176)
+...|+.||+.=.|+-++. | -|+|- +=++|.+ =-.||+|.+.+-.. -..++...+. +.-++++.
T Consensus 324 ~~~~l~~yR~~L~GKkaaiY~GGa~KswS-lv~Al~dLGMeVV~~GTqkg~~EDy~~I~e~~~~~~~m~Dd~~p~~L~~~ 402 (470)
T TIGR01283 324 IRPELEPYRERLKGKKAAIYTGGAVKSWS-LVSALQDLGMEVVATGTQKGTEEDYERIRELMGEGTVMLDDANPRELLKL 402 (470)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHH-HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf 99999998997349889986586478999-99888457917999830079888999999970799678625887899999
Q ss_pred HCCCCCCEEEEECHHHHHHHH---HHHCC
Q ss_conf 323798459997108899874---20058
Q gi|254780957|r 93 ASKTGSKKIFIIGGGEIYAQT---ISLAH 118 (176)
Q Consensus 93 ~~~~~~~~i~IIGG~~IY~~~---l~~~d 118 (176)
+.++. -+|.|.||.+-|-.+ +|+||
T Consensus 403 ~~~~~-ADlliaGgk~~y~AlK~gipFlD 430 (470)
T TIGR01283 403 LLEYK-ADLLIAGGKERYLALKLGIPFLD 430 (470)
T ss_pred HHHHC-CCEEEECCHHHHHHHHCCCCCCC
T ss_conf 98728-98898573123356551775424
No 62
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=24.04 E-value=59 Score=14.39 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=31.2
Q ss_pred CCCEEEECCHHHHHHHHCC-CCCCEEEEECHHHHHH---HHHHHCCEEEEEEECC
Q ss_conf 8985999018898876323-7984599971088998---7420058999987738
Q gi|254780957|r 77 NPEAVLASSILDSLDLASK-TGSKKIFIIGGGEIYA---QTISLAHTLYITHIEK 127 (176)
Q Consensus 77 ~~~~~~~~s~~~al~~~~~-~~~~~i~IIGG~~IY~---~~l~~~d~l~iT~I~~ 127 (176)
.++++..++++++....+. ...+++.||||+-|=- .++.... +.+|.|+.
T Consensus 122 ~~~V~~lrt~~Da~~l~~~l~~~k~vvVIGgG~IGlE~A~~l~~~G-~~Vtvve~ 175 (400)
T PRK09754 122 GERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRR-CKVTVIEL 175 (400)
T ss_pred CCCEEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEEE
T ss_conf 8998997799999999987615873999885589999999999759-94899953
No 63
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=24.04 E-value=59 Score=14.39 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=53.0
Q ss_pred CCEEEEEECCCCCCC-------C--CCCCCEEEEEEECCC-CCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf 987999711113434-------5--668963899921477-434568985999018898876323798459997108899
Q gi|254780957|r 41 GNPVVMGYRTFQSIG-------R--LLPGRTNIIITRDNT-RRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110 (176)
Q Consensus 41 ~~~vimGrkT~~sl~-------~--pLp~R~niVlTr~~~-~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~IY 110 (176)
|.+=|.|-+|=|=++ + .+--++-+|=+=... .+ ...|+..+.-+.+|++.+- ..| +.|.|+||+-|=
T Consensus 121 GrA~~vd~~tVev~~~dGsddg~ki~yTA~kIliA~Ggrps~k-P~lPG~ElgITSdEaf~L~-~lP-k~i~v~GgGYIA 197 (478)
T TIGR01424 121 GRAELVDPNTVEVLEKDGSDDGKKITYTAKKILIAVGGRPSVK-PELPGHELGITSDEAFHLP-TLP-KSILVVGGGYIA 197 (478)
T ss_pred CCEEEECCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCC-CCCCCCCCCCCCHHHCCCC-CCC-CEEEEECCCEEE
T ss_conf 4337836815797410378788316787759999877878788-8856852130413241720-055-468998676001
Q ss_pred HHHHH-------HCCEEEE-EEECCCCCCCE
Q ss_conf 87420-------0589999-87738627847
Q gi|254780957|r 111 AQTIS-------LAHTLYI-THIEKEIEGDV 133 (176)
Q Consensus 111 ~~~l~-------~~d~l~i-T~I~~~~egD~ 133 (176)
-+|-. .++.||- -.|-.-|+-|.
T Consensus 198 vEFA~I~~GLG~~vtl~yRg~~iL~GFD~d~ 228 (478)
T TIGR01424 198 VEFAGIYRGLGVQVTLIYRGEKILRGFDDDM 228 (478)
T ss_pred EEHHHHHCCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 2022232367832523451665467686899
No 64
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794 This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=23.26 E-value=61 Score=14.30 Aligned_cols=115 Identities=17% Similarity=0.330 Sum_probs=74.3
Q ss_pred EEEEEEECCCCEEEE-CCCCCC-C---CHHHHHHHHHHHCCCEEEEEECCCC----CC-------CC---------CCCC
Q ss_conf 999999717976856-267687-7---8899999999708987999711113----43-------45---------6689
Q gi|254780957|r 6 IILIAAITRNNVIGS-CGGMPW-K---ISSDLKRFKSLTTGNPVVMGYRTFQ----SI-------GR---------LLPG 60 (176)
Q Consensus 6 i~~I~A~~~n~~IG~-~~~lPW-~---~~~Dl~~Fk~~T~~~~vimGrkT~~----sl-------~~---------pLp~ 60 (176)
+.+=.|++.||-|+. .+.==| . -..|-+..|+.. ++||.|-.|=. +| .. .|..
T Consensus 169 ~~~K~A~sLDG~~A~a~~~SkWiTs~~aR~~a~~~R~~~--~ai~vG~~TV~aDnP~Lt~R~~~~~~~~~~~Y~~~~LrQ 246 (393)
T TIGR00326 169 VQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQS--DAILVGGGTVRADNPALTARLDEATELLKALYKKENLRQ 246 (393)
T ss_pred HHHHHCCCCCCCEEECCCCCCEEECHHHHHHHHHHHHHC--CEEEECCCCEEECCCCCCCCCCCCCHHHHHHCCHHHCCC
T ss_conf 245430465761020089975672768899999976460--356875730351086112647774201333120654579
Q ss_pred CEEEEEEECCCCCC------------------------CCCC---CEEE---EC---CHHHHHHHHCCCCCCEEEEECHH
Q ss_conf 63899921477434------------------------5689---8599---90---18898876323798459997108
Q gi|254780957|r 61 RTNIIITRDNTRRA------------------------SVNP---EAVL---AS---SILDSLDLASKTGSKKIFIIGGG 107 (176)
Q Consensus 61 R~niVlTr~~~~~~------------------------~~~~---~~~~---~~---s~~~al~~~~~~~~~~i~IIGG~ 107 (176)
=.-|||+|+..-.. ...+ .+.+ .. .+.+++..+.+...+.|||=||+
T Consensus 247 P~rvvl~~~~~i~~~~k~~~~~~a~tw~~~~~~~D~~~~~~l~~~~v~~~~le~~~~~~~~~~~~L~~r~~~~v~vEgG~ 326 (393)
T TIGR00326 247 PLRVVLDRQLRIPEEAKLIRDQVAPTWVITTKRADREKKKFLESLEVEIFPLEKERLTIEEVMEQLGKRGINSVLVEGGP 326 (393)
T ss_pred CEEEEECCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECHH
T ss_conf 80899546546773001010477767888356223023236111104564222354488999999874475489872158
Q ss_pred HHHHHHHH--HCCEEEE
Q ss_conf 89987420--0589999
Q gi|254780957|r 108 EIYAQTIS--LAHTLYI 122 (176)
Q Consensus 108 ~IY~~~l~--~~d~l~i 122 (176)
.+-..|+. .+|+|++
T Consensus 327 ~l~~~f~~~G~~d~l~~ 343 (393)
T TIGR00326 327 NLLGSFIDEGLVDELII 343 (393)
T ss_pred HHHHHHHHCCCHHHHHH
T ss_conf 99999974584300342
No 65
>pfam00162 PGK Phosphoglycerate kinase.
Probab=22.37 E-value=63 Score=14.20 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 5999710889------987420058999987
Q gi|254780957|r 100 KIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 100 ~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
-+.|+||+.| .+.+++.+|.+.+.=
T Consensus 190 ~~aIiGGaKisdKi~~l~~L~~k~D~iiigG 220 (383)
T pfam00162 190 FVAILGGAKVSDKIKVIENLLDKVDKLLIGG 220 (383)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEECC
T ss_conf 0899736860137999999998587789772
No 66
>KOG4211 consensus
Probab=22.35 E-value=64 Score=14.19 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=18.1
Q ss_pred ECCCCCCCCH--HHHHHHHHHHCCCEEE
Q ss_conf 6267687788--9999999970898799
Q gi|254780957|r 20 SCGGMPWKIS--SDLKRFKSLTTGNPVV 45 (176)
Q Consensus 20 ~~~~lPW~~~--~Dl~~Fk~~T~~~~vi 45 (176)
+--.|||... |=|.||...|..+.++
T Consensus 14 r~rGLPwsat~~ei~~Ff~~~~I~~~~~ 41 (510)
T KOG4211 14 RLRGLPWSATEKEILDFFSNCGIENLEI 41 (510)
T ss_pred EECCCCCCCCHHHHHHHHHCCCEEEEEE
T ss_conf 8338875453899999873486157887
No 67
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.03 E-value=65 Score=14.16 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=10.8
Q ss_pred CHHHHHHHHCCCCCCEEEEECH
Q ss_conf 1889887632379845999710
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGG 106 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG 106 (176)
+++.++..++.....-+||.||
T Consensus 333 N~~at~~Al~~~~~~iilI~GG 354 (450)
T PRK02472 333 NILATQKALSGFNQPVILLAGG 354 (450)
T ss_pred CHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9999999984589987999915
No 68
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=21.98 E-value=65 Score=14.15 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=18.2
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 188988763237984599971088998742
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTI 114 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l 114 (176)
.+.+.++.+...+.+-+|+|||+.=....+
T Consensus 84 ~fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~ 113 (155)
T COG1576 84 EFADFLERLRDDGRDISFLIGGADGLSEAV 113 (155)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCHHH
T ss_conf 999999998734984899984755479999
No 69
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=21.98 E-value=65 Score=14.15 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=24.0
Q ss_pred CCHHHHHHHHCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 01889887632379845999710889987420
Q gi|254780957|r 84 SSILDSLDLASKTGSKKIFIIGGGEIYAQTIS 115 (176)
Q Consensus 84 ~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~ 115 (176)
.+++++.+.+.+.+.+-|.=+||++....+--
T Consensus 71 ~~v~~~~~~~~~~~~D~IiavGGGS~iD~AKa 102 (366)
T PRK09423 71 NEIDRLVAIAEENGCDVIIGIGGGKTLDTAKA 102 (366)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf 99999999998649998999378388777999
No 70
>TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.
Probab=21.77 E-value=50 Score=14.80 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=24.5
Q ss_pred ECCCCCCCC------CCCC------CEEEEEEECCCCCCCCCCCEEEECCHHHHHHHH
Q ss_conf 111134345------6689------638999214774345689859990188988763
Q gi|254780957|r 48 YRTFQSIGR------LLPG------RTNIIITRDNTRRASVNPEAVLASSILDSLDLA 93 (176)
Q Consensus 48 rkT~~sl~~------pLp~------R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~ 93 (176)
|+|||-||= .|.| =...|+.++. +........++.+.++||+..
T Consensus 103 k~TFEkLGIPeaE~k~LaGvav~AQYdSEviY~~~--Ke~L~~~GVIF~d~d~Al~~Y 158 (469)
T TIGR01980 103 KDTFEKLGIPEAERKALAGVAVGAQYDSEVIYHNI--KEDLEEKGVIFCDMDTALKEY 158 (469)
T ss_pred HHHHHHCCCCHHHHHHHCCCEEEEEEEEEEEECCC--HHHHHHCCEEECCHHHHHHHC
T ss_conf 98764448617999874253577886204462220--467562987863859986517
No 71
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=21.52 E-value=66 Score=14.09 Aligned_cols=37 Identities=14% Similarity=0.492 Sum_probs=25.2
Q ss_pred CCCCEEEEECHHHH-HHHHH---HHCCEEEEEEECC--CCCCCEE
Q ss_conf 79845999710889-98742---0058999987738--6278476
Q gi|254780957|r 96 TGSKKIFIIGGGEI-YAQTI---SLAHTLYITHIEK--EIEGDVF 134 (176)
Q Consensus 96 ~~~~~i~IIGG~~I-Y~~~l---~~~d~l~iT~I~~--~~egD~~ 134 (176)
...|+|.||||+.- .++++ ++++++|| ||. .+=++..
T Consensus 149 fk~K~V~VvGGGdsA~eEA~yL~~~a~kV~l--vHRRd~fRA~k~ 191 (321)
T TIGR01292 149 FKNKEVAVVGGGDSALEEALYLTRIAKKVTL--VHRRDKFRAEKI 191 (321)
T ss_pred HCCCEEEEECCCCHHHHHHHHHHHCCCEEEE--EECCCCCCCCHH
T ss_conf 0598899987982488888999853876799--977986363289
No 72
>TIGR01923 menE O-succinylbenzoate-CoA ligase; InterPro: IPR010192 This entry represents the enzyme O-succinylbenzoate-CoA ligase (MenE), which is involved in the fourth step of the menaquinone (vitamin K2) biosynthesis pathway. In bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In green sulphur bacteria and heliobacteria, menaquinones are thought to be used as a loosely bound secondary electron acceptor in the photosynthetic reaction centre. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem (PS) I. .; GO: 0008756 o-succinylbenzoate-CoA ligase activity, 0009234 menaquinone biosynthetic process.
Probab=21.08 E-value=23 Score=16.76 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=17.1
Q ss_pred CEEEEECHHHHH----HHHH---HHCCEEEE
Q ss_conf 459997108899----8742---00589999
Q gi|254780957|r 99 KKIFIIGGGEIY----AQTI---SLAHTLYI 122 (176)
Q Consensus 99 ~~i~IIGG~~IY----~~~l---~~~d~l~i 122 (176)
+++||.||+.|| |+.+ |.+.+..+
T Consensus 392 ~dliISGGENIyP~EIE~v~~s~p~v~~a~v 422 (490)
T TIGR01923 392 DDLIISGGENIYPEEIEKVLYSHPGVQEAVV 422 (490)
T ss_pred CCCEEECCCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 1434617856687999999853876268888
No 73
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=20.95 E-value=68 Score=14.02 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECH
Q ss_conf 99999999708987999711113434566-896389992147743456898599901889887632379845999710
Q gi|254780957|r 30 SDLKRFKSLTTGNPVVMGYRTFQSIGRLL-PGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGG 106 (176)
Q Consensus 30 ~Dl~~Fk~~T~~~~vimGrkT~~sl~~pL-p~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG 106 (176)
+|++++|+.|.+..||=|=-|-+.--+.. -|-.-||+|.--..+.+. +.+.-++|....+.-..+|++=||
T Consensus 226 ~di~wlr~~w~~plilKGI~~~eDA~~A~~~G~dgIiVSNHGGRQLD~------a~~~id~Lp~I~~av~~~V~~DgG 297 (361)
T cd04736 226 QDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDD------AIAPIEALAEIVAATYKPVLIDSG 297 (361)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCC------CCCHHHHHHHHHHHHCCEEEEECC
T ss_conf 999999986699745521489999999987699999975886333577------741477799999971994999489
No 74
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=20.48 E-value=70 Score=13.96 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=25.5
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCE-------EEEEEECCCCCCCEEC
Q ss_conf 18898876323798459997108899874200589-------9998773862784766
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHT-------LYITHIEKEIEGDVFF 135 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~-------l~iT~I~~~~egD~~f 135 (176)
++++.++.+.+.+-+-+|+|||--..+.+..+.++ +-+-=|.+..+.|..+
T Consensus 159 d~~~ivd~l~~~gid~L~~IGGDGTl~gA~~i~~e~~~rgl~I~VvGIPKTIDNDi~~ 216 (442)
T PRK06830 159 DPVEIVDTLERMNINILFVIGGDGTLKGALKIAEEIARRNLKISVVGIPKTIDNDINF 216 (442)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 9899999999839998999488027899999999999638994077456433477543
Done!