HHsearch alignment for GI: 254780957 and conserved domain: pfam01872
>pfam01872 RibD_C RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.
Probab=99.25 E-value=3.4e-10 Score=79.90 Aligned_cols=148 Identities=17% Similarity=0.239 Sum_probs=104.1
Q ss_pred CCEEEEEEECCCCEEEE-CCCCCC-CCHHHHHHHHHHH-CCCEEEEEECCCCCC-C----C------CCCCCEEEEEEEC
Q ss_conf 71999999717976856-267687-7889999999970-898799971111343-4----5------6689638999214
Q gi|254780957|r 4 PEIILIAAITRNNVIGS-CGGMPW-KISSDLKRFKSLT-TGNPVVMGYRTFQSI-G----R------LLPGRTNIIITRD 69 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG~-~~~lPW-~~~~Dl~~Fk~~T-~~~~vimGrkT~~sl-~----~------pLp~R~niVlTr~ 69 (176)
T Consensus 1 P~V~l~~A~SlDG~Ia~~~g~~~wis~~~~~~~~~~lR~~~daIlvG~~T~~~d~p~l~~r~~~~~~~~~~p~~vVl~~~ 80 (196)
T pfam01872 1 PYVILKFAISLDGKIAAAGGSSQWITGEEARADVHQLRAEADAILVGRGTVRADNPSLTVRWVKGRAAERQPPRVVVDST 80 (196)
T ss_pred CEEEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECHHHHHHHCCCCCEECCCCCCCCCCCEEEEECCC
T ss_conf 98999999969888599999867138977989999998618959974565211075651650476631369829998378
Q ss_pred CCCCCC-----CCCCEEEE-----------------CCHHHHHHHHCCCCCCEEEEECHHHHHHHHH--HHCCEEEEEEE
Q ss_conf 774345-----68985999-----------------0188988763237984599971088998742--00589999877
Q gi|254780957|r 70 NTRRAS-----VNPEAVLA-----------------SSILDSLDLASKTGSKKIFIIGGGEIYAQTI--SLAHTLYITHI 125 (176)
Q Consensus 70 ~~~~~~-----~~~~~~~~-----------------~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I 125 (176)
T Consensus 81 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~ilveGG~~l~~~fl~~~LiDE~~l~i~ 160 (196)
T pfam01872 81 LRVPLDARVLNDDAPTLVATTEPADKEKVEKLKVLRVDLKELLRELKERGIRSLLVEGGATLAGSLLRAGLVDELRLYIA 160 (196)
T ss_pred CCCCCHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 88892124425899889998376325432122345789999999998679987999857999999976884889899983
Q ss_pred CCCCC--CCEECCCCCH--HHEEEEEEEEE
Q ss_conf 38627--8476657895--56089856651
Q gi|254780957|r 126 EKEIE--GDVFFPSIDS--NIWKKQEKEII 151 (176)
Q Consensus 126 ~~~~e--gD~~fP~id~--~~~~~~~~~~~ 151 (176)
T Consensus 161 P~ilG~~g~~~f~~~~~~~~~l~l~~~~~~ 190 (196)
T pfam01872 161 PKLLGGGGRTLFGGEGFLALKLKLVSSEAI 190 (196)
T ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 667889997777889976767689889992