HHsearch results for GI: 254780957 and protein with PDBid: 3ky8_A
>3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.52 E-value=4.7e-13 Score=95.34 Aligned_cols=157 Identities=17% Similarity=0.282 Sum_probs=106.5
Q ss_pred CCEEEEEEECCCCEEE-ECCCCCCCC----HHHH----HHHHHHHCCCEEEEEECCCCCCC----CCCCCCEEEEEEECC
Q ss_conf 7199999971797685-626768778----8999----99999708987999711113434----566896389992147
Q gi|254780957|r 4 PEIILIAAITRNNVIG-SCGGMPWKI----SSDL----KRFKSLTTGNPVVMGYRTFQSIG----RLLPGRTNIIITRDN 70 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG-~~~~lPW~~----~~Dl----~~Fk~~T~~~~vimGrkT~~sl~----~pLp~R~niVlTr~~ 70 (176)
++| +..|++.+|.|. .+|...|-. +++. +-+++.. .+|||||+||+... .+.+++..+|+|+..
T Consensus 21 ~~I-v~iA~SLDG~IA~~~g~~~Wi~~~~~~~~~~~~~~~~~~~~--dailvGr~Ty~~~~~~~~~~~~~~~~~V~s~~~ 97 (197)
T 3ky8_A 21 ANI-VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERV--DGLVMGRNTLDMVLSFDCDWPYSKPVFVLSNTM 97 (197)
T ss_dssp EEE-EEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHC--SEEEEEHHHHHHHCCTTCCCCCSSCEEEECSSC
T ss_pred CCE-EEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CEEEECCCCEECCCCCCCCCCCCCCEEEECCCC
T ss_conf 000-39999487821898998368479888789999999998548--999978141103355575566788789970666
Q ss_pred CCCCC-CCCCEEEEC-CHHHHHHHHCCCCCCEEEEECHHHHHHHHH--HHCCEEEEEEECCCC-CCCEECCCCCH-HHEE
Q ss_conf 74345-689859990-188988763237984599971088998742--005899998773862-78476657895-5608
Q gi|254780957|r 71 TRRAS-VNPEAVLAS-SILDSLDLASKTGSKKIFIIGGGEIYAQTI--SLAHTLYITHIEKEI-EGDVFFPSIDS-NIWK 144 (176)
Q Consensus 71 ~~~~~-~~~~~~~~~-s~~~al~~~~~~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I~~~~-egD~~fP~id~-~~~~ 144 (176)
..... ..+.+.++. ++.++++.+.+...+.++| ||+.+..+++ .++|+++++..+.-. .|...|+.++. -.|+
T Consensus 98 ~~~~~~~~~~v~~~~~d~~~~l~~l~~~g~~~i~i-gGg~~~~~~l~~gLvDEl~l~i~P~llG~G~~lF~~~~~~~~L~ 176 (197)
T 3ky8_A 98 TEVPQGYEDKVFLVKGKLVDIIADLNAKGFNELYI-DGGVTIQNFLKEDLIDEMVITRFPILLGGGVPLFGELESSLSFN 176 (197)
T ss_dssp CSCCTTCTTTEEEECSCHHHHHHHHHHTTCCEEEE-ESHHHHHHHHHTTCCCEEEEEEESEECSSSEESCCCCSSCEEEE
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEE-CCCCCCHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCE
T ss_conf 64554689989998299799999999679966998-16761100120688755799992379758851667777676778
Q ss_pred EEEEEEEECCCCCCCCCEEEEEEEEEC
Q ss_conf 985665102688888736999999801
Q gi|254780957|r 145 KQEKEIITSAGEGDDYPTRFVIYDRFL 171 (176)
Q Consensus 145 ~~~~~~~~~~~e~n~~~y~f~~y~R~~ 171 (176)
+.+.+.+. ++ ..+.+|+|+.
T Consensus 177 L~~~~~~~-----~g--~v~l~Y~~kr 196 (197)
T 3ky8_A 177 VIKSEVVL-----DS--LTQTTYHRKR 196 (197)
T ss_dssp EEEEEEET-----TT--EEEEEEEECC
T ss_pred EEEEEECC-----CC--EEEEEEEEEE
T ss_conf 96889928-----98--6999999950