RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus str. psy62] (176 letters) >3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* 1rf7_A* ... (A:) Length = 159 Score = 149 bits (378), Expect = 2e-37 Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 7/164 (4%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 I LIAA+ + VIG MPW + +DL FK T PV+MG T++SIGR LPGR NII Sbjct: 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNII 61 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 ++ + S+ +++ +I +IGGG +Y Q + A LY+THI Sbjct: 62 LSSQPG----TDDRVTWVKSVDEAIAACG--DVPEIMVIGGGRVYEQFLPKAQKLYLTHI 115 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + E+EGD FP + + W+ E A + + F I +R Sbjct: 116 DAEVEGDTHFPDYEPDDWESVFSEFH-DADAQNSHSYCFEILER 158 >1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus} (A:) Length = 164 Score = 149 bits (377), Expect = 2e-37 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 I I A+ N VIG +PW + +DL FK +T G+ +VMG +TF++IGR LPGR N++ Sbjct: 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTMGHAIVMGRKTFEAIGRPLPGRDNVV 61 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 +T + S PE L L+ + + + ++FIIGG E++ T+ + LY+T I Sbjct: 62 VTGN----RSFRPEGCLVLHSLEEVKQWIASRADEVFIIGGAELFRATMPIVDRLYVTKI 117 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 GD F+P I + W+ E + Y F+IY+R Sbjct: 118 FASFPGDTFYPPISDDEWEIVSYTPGG-KDEKNPYEHAFIIYER 160 >3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A (A:) Length = 162 Score = 146 bits (370), Expect = 2e-36 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 6/164 (3%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 + +IAA+ N VIG MPW + ++L+ FK T G P+VMG TF+SIGR LPGR NI+ Sbjct: 3 VSMIAALANNRVIGLDNKMPWHLPAELQLFKRATLGKPIVMGRNTFESIGRPLPGRLNIV 62 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 ++R + +++ D++ A +++ IIGG IY Q ++ A LY+THI Sbjct: 63 LSRQTD---YQPEGVTVVATLEDAVVAAG--DVEELMIIGGATIYNQCLAAADRLYLTHI 117 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 E EGD +FP + W++ E E A + + + RF + +R Sbjct: 118 ELTTEGDTWFPDYEQYNWQEIEHESYA-ADDKNPHNYRFSLLER 160 >2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3fyw_X* 3fyv_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3fqc_A* 3fqz_A* 3f0u_X* 3fqf_A* 3fqo_A* 3fqv_A* 2w9s_A* 2w9t_A (A:) Length = 159 Score = 146 bits (369), Expect = 2e-36 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 9/164 (5%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 + ++ A VIG +PW + +DLK K L+TG+ +VMG +TF+SIG+ LP R N++ Sbjct: 3 LSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVV 62 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 +T D + + SI D L +FI GG ++ + I +YIT I Sbjct: 63 LTSD---TSFNVEGVDVIHSIEDIYQLP-----GHVFIFGGQTLFEEMIDKVDDMYITVI 114 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 E + GD FFP W+ E + P F+ R Sbjct: 115 EGKFRGDTFFPPYTFEDWEVASSVEGK-LDEKNTIPHTFLHLIR 157 >3e0b_A Dihydrofolate reductase; oxidoreductase; HET: NAP N22; 2.25A {Bacillus anthracis} PDB: 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A* (A:) Length = 166 Score = 145 bits (366), Expect = 4e-36 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 7/169 (4%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPG 60 + + A+ N VIG +PW++ S+L+ K T G+P++MG + +++IGR LPG Sbjct: 3 HHM-RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPG 61 Query: 61 RTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTL 120 R NII+TR+ +A S+ + +L ++IFI GG +IY + L Sbjct: 62 RRNIIVTRN---EGYHVEGCEVAHSVEEVFELCK--NEEEIFIFGGAQIYDLFLPYVDKL 116 Query: 121 YITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 YIT I EGD FFP +D WK+ E + E + Y + +Y++ Sbjct: 117 YITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLT-DEKNPYTYYYHVYEK 164 >3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} (A:) Length = 162 Score = 133 bits (335), Expect = 2e-32 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI-GRLLPGRTNI 64 + A RN +IG G +PW + DL F++ T G +V+G RT++S R LP RTN+ Sbjct: 1 TAFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNV 60 Query: 65 IITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITH 124 ++T AV+ + A + +++ I GG +I+ TL +T Sbjct: 61 VLTHQED---YQAQGAVVVHDVAAVFAYAKQHLDQELVIAGGAQIFTAFKDDVDTLLVTR 117 Query: 125 IEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + EGD ++ + + K T + ++ + Sbjct: 118 LAGSFEGDTKMIPLNWDDFTKVSSR--TVEDTNPALTHTYEVWQK 160 >3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae} (A:) Length = 190 Score = 130 bits (329), Expect = 8e-32 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 8/171 (4%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG-RLLP 59 MT+ +I+ I A VIG +PW + ++L+ FK T + ++MG TF +G RLLP Sbjct: 21 MTK-KIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTLNHAILMGRVTFDGMGRRLLP 79 Query: 60 GRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHT 119 R +I+TR+ + LD S K ++I+GG +I+ Sbjct: 80 KRETLILTRNPE---EKIDGVATFHDVQSVLDWYSAQE-KNLYIVGGKQIFQAFEPYLDE 135 Query: 120 LYITHIEKEIEGDVFFPS-IDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + +THI +EGD +FP+ D ++++ + T E + Y R Sbjct: 136 VIVTHIHARVEGDTYFPAEFDLSLFETVSSKFYTK-DEKNPYDFTIQYRKR 185 >1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} (A:) Length = 162 Score = 128 bits (323), Expect = 4e-31 Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 11/166 (6%) Query: 5 EIILIAAITRNNVIGSCGGMPWK-ISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTN 63 E++ +AA+ N VIG G +PW I +D K+++S +PVV+G TF+S+ LPG Sbjct: 2 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIADDPVVLGRTTFESMRDDLPGSAQ 61 Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYIT 123 I+++R + R+ A A+S+ +++D+A+ ++ ++IGG IYA + ++ Sbjct: 62 IVMSR--SERSFSVDTAHRAASVEEAVDIAASLDAETAYVIGGAAIYALFQPHLDRMVLS 119 Query: 124 HIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + E EGD ++P D+ W+ + + + + + R Sbjct: 120 RVPGEYEGDTYYPEWDAAEWELDAET------DHEGF--TLQEWVR 157 >2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A* (A:) Length = 167 Score = 125 bits (316), Expect = 2e-30 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 15/175 (8%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRL--- 57 MTR E+ L+ A + + VIG G +PW + DL RFK +T G+ V+MG RT++S+ Sbjct: 1 MTRAEVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTMGHTVIMGRRTWESLPAKVRP 60 Query: 58 LPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLA 117 LPGR N++++R V A +A S+ +L A ++IGG +IY + A Sbjct: 61 LPGRRNVVVSRR---PDFVAEGARVAGSLEAALAYA--GSDPAPWVIGGAQIYLLALPHA 115 Query: 118 HTLYITHIEKEI---EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 +T IE ++ + D P++D + E RF Y R Sbjct: 116 TRCEVTEIEIDLRRDDDDALAPALDDSWV----GETGEWLASRSGLRYRFHSYRR 166 >1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} (A:) Length = 193 Score = 125 bits (315), Expect = 3e-30 Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 29/188 (15%) Query: 5 EIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTN 63 G G+PW ++ DL+ FK+ T G ++MG +TFQS+ LLPGR++ Sbjct: 9 SPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTEGTIMIMGAKTFQSLPTLLPGRSH 68 Query: 64 IIITR--DNTRRASVNPEAVLASSI----------------LDSLDLASKTGSKKIFIIG 105 I++ + A + ++ + K+ +IG Sbjct: 69 IVVCDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSVIG 128 Query: 106 GGEIYAQTISLAHTLYITHIEKEI------EGDVFFPSIDSNIWKKQEKEIITSAGEGDD 159 G + + A + ++ I K + D F S + E E Sbjct: 129 GPALLYAALPYADEVVVSRIVKRHRVNSTVQLDASFLDDISK-REMVETHWYKI-DEVTT 186 Query: 160 YPTRFVIY 167 +Y Sbjct: 187 L--TESVY 192 >3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* (A:) Length = 227 Score = 120 bits (301), Expect = 1e-28 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%) Query: 1 MTR-PEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLT-------TGNPVVMGYRTFQ 52 M++ P + ++AA+ IG G +PW+++ ++K F+ +T N V+MG +T++ Sbjct: 1 MSKVPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWE 60 Query: 53 SI---GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSL------DLASKTGSKKIFI 103 SI R LP R N++++R + + S+ L + LA++ ++I+I Sbjct: 61 SIPQKFRPLPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYI 120 Query: 104 IGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTR 163 IGGGEIY Q++ LA IT I + P +D+ + K++ ++ Sbjct: 121 IGGGEIYRQSMDLADHWLITKI--MPLPETTIPQMDTFLQKQELEQRFYDN-SDKLVDFL 177 Query: 164 FVIYDR 169 Sbjct: 178 PSSIQL 183 >1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} (A:) Length = 280 Score = 117 bits (293), Expect = 1e-27 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 11/174 (6%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI---GRL 57 +T + +D+ K N VVMG ++SI + Sbjct: 61 VTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSK--KLQNVVVMGRTNWESIPKKFKP 118 Query: 58 LPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTIS-- 115 L R N+I++R ++ + + + + + D + L K K FI+GG +Y + + Sbjct: 119 LSNRINVILSR-TLKKEDFDEDVYIINKVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKK 177 Query: 116 LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 L +Y T I E DVFFP I+ N ++ + + F+IY + Sbjct: 178 LIKKIYFTRINSTYECDVFFPEINENEYQIISVSDVYT-SNNTTL--DFIIYKK 228 >1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold, nicotinamide adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} (A:) Length = 159 Score = 115 bits (290), Expect = 2e-27 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 19/170 (11%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI---GRLLPGRT 62 + LI A + VIG G +PW++ D F+ +T G+ +VMG RT+ S+ R LPGR Sbjct: 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRR 61 Query: 63 NIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYI 122 N++++R + A + S+ + S + ++IGGG++YA + A + Sbjct: 62 NVVLSRQ---ADFMASGAEVVGSLEE------ALTSPETWVIGGGQVYALALPYATRCEV 112 Query: 123 THIEKEI---EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 T ++ + GD P +D E R Y R Sbjct: 113 TEVDIGLPREAGDALAPVLDETWR----GETGEWRFSRSGLRYRLYSYHR 158 >2h2q_A Bifunctional dihydrofolate reductase-thymidylate synthase; bifunctional enzyme in complex with NADP and DUMP, oxidoreductase, transferase; HET: NAP DU; 2.40A {Trypanosoma cruzi} PDB: 3cl9_A* 3clb_A* 3hbb_A* (A:16-234) Length = 219 Score = 108 bits (270), Expect = 4e-25 Identities = 40/215 (18%), Positives = 70/215 (32%), Gaps = 46/215 (21%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------------NPVVMG 47 + L+ A+ IG +PW + D+K F+ +TT N VVMG Sbjct: 3 LALRAFSLVVAVDERGGIGDGRSIPWNVPEDMKFFRDVTTKLRGKNVKPSPAKRNAVVMG 62 Query: 48 YRTFQSI---GRLLPGRTNIIITRD------------NTRRASVNPEAVLASSILDS--- 89 +T+ SI R LPGR N++++ +R V + L+ Sbjct: 63 RKTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALQ 122 Query: 90 --LDLASKTGSKKIFIIGGGEIYAQTISL-----AHTLYITHIEKEIEGDVFFPSIDSNI 142 + ++ IGGG +YA+ + +Y T I F + + Sbjct: 123 LLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYRTTIRASESSCSVFFRVPESG 182 Query: 143 WKKQEKEIITS--------AGEGDDYPTRFVIYDR 169 + + G++ F Sbjct: 183 TEAAAGIEWQRETISEELTSANGNETKYYFEKLIP 217 >3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics, slipchip,structural genomics, PSI-2, protein structure initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO} PDB: 3i3r_A* 3k2h_A* (A:1-227,A:472-511) Length = 267 Score = 107 bits (268), Expect = 8e-25 Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 31/193 (16%) Query: 1 MTRPE-----IILIAAITRNNVIGSCGGMPWK-ISSDLKRFKSLTTGNP----------- 43 M+ + + A+ N VIG +PW I+ D + ++ TT P Sbjct: 1 MSNSYEGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQ 60 Query: 44 --VVMGYRTFQSI---GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGS 98 V+ G +T++SI L R N+I++R V V DL + Sbjct: 61 NVVIFGRKTYESIPKASLPLKNRINVILSRT---VKEVPGCLVYEDLSTAIRDLRANVPH 117 Query: 99 KKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGE 156 KIFI+GG +Y + + L +Y+T + KE GD +FP I Sbjct: 118 NKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIPDTFEITAISPTF----S 173 Query: 157 GDDYPTRFVIYDR 169 D FVIY+R Sbjct: 174 TDFVSYDFVIYER 186 >1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} (A:) Length = 186 Score = 104 bits (260), Expect = 7e-24 Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 17/183 (9%) Query: 4 PEIILIAAITRNNVIGSCGGMPWK-ISSDLKRFKSLTTGNP-------VVMGYRTFQSI- 54 + I A+++N IG G +PW + ++ + F+ +TT + V+MG +T+ SI Sbjct: 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIP 61 Query: 55 --GRLLPGRTNIIIT--RDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110 R L GR N++++ + + L ++ + ++I+GG +Y Sbjct: 62 EKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVY 121 Query: 111 AQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITS--AGEGDDYPTRFVI 166 + ++ L++T I ++ E D FFP ID +K + E +F + Sbjct: 122 KEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEV 181 Query: 167 YDR 169 Y++ Sbjct: 182 YEK 184 >2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A* (A:) Length = 238 Score = 101 bits (251), Expect = 8e-23 Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 16/180 (8%) Query: 1 MTRPEIILIAAITRNNVIGSCGG-----MPWKISSDLKRFKSLTTGNPVVMGYRTFQSI- 54 R + + + N VVMG +++SI Sbjct: 63 YVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNADKLQNVVVMGRSSWESIP 122 Query: 55 --GRLLPGRTNIIITRDNTRRASVNPEAVL-ASSILDSLDLASKTGSKKIFIIGGGEIYA 111 + LP R N+++++ T E V SI D L L K K FIIGG ++Y Sbjct: 123 KQYKPLPNRINVVLSK--TLTKEDVKEKVFIIDSIDDLLLLLKKLKYYKCFIIGGAQVYR 180 Query: 112 QTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + +S L +Y T I DVFFP D + ++ + F++Y + Sbjct: 181 ECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEV---YNSKGTTLDFLVYSK 237 >1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} (A:) Length = 192 Score = 100 bits (249), Expect = 1e-22 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 29/194 (14%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQS 53 + I++AA+ IG G MPW++ +++ FK +TT N V+MG +T++S Sbjct: 2 LKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWES 61 Query: 54 I---GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110 I R LP R NII++R + + ++ +S ++S L + +++FIIGG EIY Sbjct: 62 IPQKFRPLPDRLNIILSRS--YENEIIDDNIIHASSIESS-LNLVSDVERVFIIGGAEIY 118 Query: 111 AQTIS--LAHTLYITHIE----KEIEGDVFFPSIDSNIWKKQEKEIITS---------AG 155 + I+ L L IT IE + IE D F + W KQ K + Sbjct: 119 NELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLES-WTKQPKSELQKFVGDTVLEDDI 177 Query: 156 EGDDYPTRFVIYDR 169 + D+ + ++ R Sbjct: 178 KEGDFTYNYTLWTR 191 >3dl5_A Dihydrofolate reductase, DHFR; enzyme active site mutant, enzyme-ligand complex, , oxidoreductase; HET: UMP CB3 DHF NDP; 2.74A {Cryptosporidium hominis} PDB: 3dl6_A* 1qzf_A* 1sej_A* 2oip_A* (A:1-236,A:482-521) Length = 276 Score = 98.3 bits (244), Expect = 5e-22 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 16/181 (8%) Query: 1 MTRPEIILIAAIT-RNNVIGSCGGMPWKISSDLKRFKSLTTG-------NPVVMGYRTFQ 52 M+ + ++ A + ++ IG G +PW IS DLK F +T N ++MG +T+ Sbjct: 1 MSEKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWD 60 Query: 53 SI-GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYA 111 SI R L R ++I+ + + V + +L + + IF+ GG IY Sbjct: 61 SIGRRPLKNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYR 120 Query: 112 QTIS--LAHTLYITHIEKEI-EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYD 168 + +Y+T + E E D +FP I + + F+I++ Sbjct: 121 DALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTF----CTKNISYDFMIFE 176 Query: 169 R 169 + Sbjct: 177 K 177 >2fzi_A Dihydrofolate reductase; trimethoprim derivatives, ring stacking interactions, oxidoreductase; HET: NAP DH3; 1.60A {Pneumocystis carinii} (A:) Length = 206 Score = 95.7 bits (237), Expect = 3e-21 Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 35/204 (17%) Query: 1 MT-RPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKS----------LTTGNPVVMGYR 49 M + + LI A+T + IG +PWK+ ++ FK + N V+MG + Sbjct: 1 MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRK 60 Query: 50 TFQSI---GRLLPGRTNIIITRDNTRRASVN-----PEAVLASSILDSLDLASKTGSKKI 101 T++SI R L GR N++ITR+ + + + S +I Sbjct: 61 TWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRI 120 Query: 102 FIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSI-DSNIWKKQEKEIITS----- 153 F+IGG ++Y + + T I K+I DVFFP W K+ S Sbjct: 121 FVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESW 180 Query: 154 --------AGEGDDYPTRFVIYDR 169 D + F ++ R Sbjct: 181 VGTKVPHGKINEDGFDYEFEMWTR 204 >1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} (A:) Length = 168 Score = 90.6 bits (224), Expect = 1e-19 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 8/169 (4%) Query: 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-NPVVMGYRTFQSIGRLLPGRTN 63 ++I + A+ + I S W D K F+ +TT VVMG TF+ IGR LP R N Sbjct: 2 KVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTEIGNVVMGRITFEEIGRPLPERLN 60 Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTIS--LAHTLY 121 +++TR + ++ S D + G +++ +IGG ++ + + L L+ Sbjct: 61 VVLTR-RPKTSNNPSLVFFNGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELF 119 Query: 122 ITHIEKEI-EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 +T +G FF + K + E ++ + Sbjct: 120 VTVEPYVFGKGIPFFDEFEGYFPLKLLEM--RRLNERGTLFLKYSVEKS 166 >1hw4_A TS, thymidylate synthase; methyltransferase; HET: CME; 2.06A {Homo sapiens} (A:1-315) Length = 315 Score = 33.5 bits (76), Expect = 0.015 Identities = 4/48 (8%), Positives = 12/48 (25%), Gaps = 6/48 (12%) Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFLSK 173 D P+ ++ ++ + + R R + Sbjct: 3 HHHHHHDTDIPTTENLTFQGACRLVANCRD------VRCRRLLRNVMP 44 >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} (A:155-360) Length = 206 Score = 31.8 bits (71), Expect = 0.058 Identities = 23/203 (11%), Positives = 56/203 (27%), Gaps = 36/203 (17%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRF--KSLTTGNPVVMGYRTFQSIGRLL 58 RP + L A T + I G I+ L+ + + V++G T L Sbjct: 3 KKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEXRNIYSAVLVGAGTVLKDNPQL 62 Query: 59 PGR-------------------------------TNIIITRDNTRRASVNPEAVLASSIL 87 R + + +A+ S+ Sbjct: 63 TCRLKEGRNPVRVILDRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVE 122 Query: 88 DSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDV-FFPSIDSNIWKKQ 146 L + + + GG +++++ + A ++ + K + F S++ Sbjct: 123 SILRNLYERDIDSVLVEGGSKVFSEFLDHADVVFGFYSTKIFGKGLDVFSGYLSDVSVPP 182 Query: 147 EKEIITSAGEGDDYPTRFVIYDR 169 + +++ + Sbjct: 183 KFKVVNVEFSDSE--FLVEXRPC 203 >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} (A:159-268) Length = 110 Score = 28.0 bits (62), Expect = 0.80 Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 8/90 (8%) Query: 87 LDSLDLASKTGSKKIFIIGGG----EIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNI 142 + + + + + IIG G EI + + +I + + I + + Sbjct: 3 IFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTL 62 Query: 143 WKKQEKEIITSAG----EGDDYPTRFVIYD 168 + I ++ + VIY Sbjct: 63 LSILKLNIKFNSPVTEVKKIKDDEYEVIYS 92 >1ewn_A 3-methyl-adenine DNA glycosylase; DNA repair, AAG, ANPG, MPG, hydrolase/DNA complex; HET: DNA EDA; 2.10A {Homo sapiens} (A:) Length = 219 Score = 27.9 bits (62), Expect = 0.85 Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%) Query: 151 ITSAGEGDDYPTRFVIYD-RFLSK 173 + AGE P RF + ++S Sbjct: 185 VGHAGEWARKPLRFYVRGSPWVSV 208 >2gfq_A UPF0204 protein PH0006; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Pyrococcus horikoshii OT3} (A:) Length = 298 Score = 27.5 bits (61), Expect = 1.1 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 22/107 (20%) Query: 77 NPEA--VLASSILDSLDLASKTGSKKIFIIG-GGEIYAQTIS---LAHTLYITHI----- 125 N A ++A +I+ LD K SK +G GG YA + L L HI Sbjct: 186 NDRAGEIIAETIIYVLDNYEKGRSKFKVALGIGGGHYAPKQTKRALEGDLAFGHILPKYA 245 Query: 126 --------EKEIE---GDVFFPSIDSNIWKKQEKEIITSAGEGDDYP 161 K + V +D + + +++ S + Sbjct: 246 QPVSRDVXIKALNRFGEKVEAIYVDWKGSRGETRQLAKSLAQELGLE 292 >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} (A:1-234) Length = 234 Score = 26.3 bits (57), Expect = 2.7 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 43 PVVMGYRTFQSIGRLLPG----RTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGS 98 P Y + + G R N+++ R+ R +P+ +L LD G Sbjct: 176 PFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLD-----GR 230 Query: 99 KK 100 +K Sbjct: 231 EK 232 >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} (A:122-242) Length = 121 Score = 25.7 bits (56), Expect = 3.6 Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 4/66 (6%) Query: 91 DLASKTGSKKIFIIGGG----EIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQ 146 + +IG G E + + I G + ++ Sbjct: 21 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 80 Query: 147 EKEIIT 152 E IT Sbjct: 81 EANNIT 86 >6ldh_A M4 APO-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); 2.00A {} (A:) Length = 330 Score = 25.8 bits (55), Expect = 3.8 Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%) Query: 94 SKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEI 129 KI ++G G + + A ++ + + E+ Sbjct: 17 EPRSYNKITVVGVGAVGM---ACAISILMKDLADEV 49 >1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas fluorescens} (A:1-242,A:371-406) Length = 278 Score = 25.4 bits (54), Expect = 4.7 Identities = 4/19 (21%), Positives = 6/19 (31%) Query: 52 QSIGRLLPGRTNIIITRDN 70 R + IT D+ Sbjct: 223 SYFKRYHEQGAIVAITADH 241 >3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} (A:) Length = 220 Score = 25.2 bits (54), Expect = 5.7 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 2/91 (2%) Query: 63 NIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYI 122 ++ +A ++ + K+ G G+ ++A T Sbjct: 26 ELLQKEAQAVLNIPVTDAY--EKAVELIVEQIHRKKGKLVTSGXGKAGQIAXNIATTFCS 83 Query: 123 THIEKEIEGDVFFPSIDSNIWKKQEKEIITS 153 T I D I ++ + ++ S Sbjct: 84 TGIPSVFLHPSEAQHGDLGILQENDLLLLIS 114 >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:1-108) Length = 108 Score = 24.8 bits (54), Expect = 6.5 Identities = 8/27 (29%), Positives = 15/27 (55%) Query: 83 ASSILDSLDLASKTGSKKIFIIGGGEI 109 + D L A+ ++KI ++G GE+ Sbjct: 4 MIKLRDELGTATTDSAQKILLLGSGEL 30 >2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 2hl1_A* (A:) Length = 143 Score = 24.7 bits (54), Expect = 6.5 Identities = 7/27 (25%), Positives = 15/27 (55%) Query: 77 NPEAVLASSILDSLDLASKTGSKKIFI 103 NPE V +I + +A + ++ +F+ Sbjct: 52 NPEEVSLKAIEEISKVAEQVKAENVFV 78 >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenase; HET: NAD; 2.20A {Weissella confusa} (A:) Length = 309 Score = 24.6 bits (52), Expect = 7.6 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%) Query: 98 SKKIFIIGGGEIYAQTISLAHTLYITHIEKEI 129 ++KI IIG G + A ++AH L + + Sbjct: 1 ARKIGIIGLGNVGA---AVAHGLIAQGVADDY 29 >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} (A:147-373) Length = 227 Score = 24.5 bits (52), Expect = 7.7 Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKR 34 P + L AA + + I + G I+S+ R Sbjct: 9 TGLPYVTLKAAASLDGKIATSTGDSKWITSEAAR 42 >2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Bacillus subtilis} (A:) Length = 189 Score = 24.3 bits (52), Expect = 8.4 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 1 MTRPEIILIAAITRNNVI-GSCGGMPWKISSDLKRFKSLTTGNP-VVMGYRTFQSIGRLL 58 + + IIL A+T + I G G + W I F ++ G ++F G+ + Sbjct: 6 LKQRRIILDLAVTLDGFIEGKNGEVDWCIXDPDXGFTDFLNQIDTILYGRKSFDLWGQYI 65 Query: 59 PGR 61 P Sbjct: 66 PKN 68 >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* (A:) Length = 317 Score = 24.6 bits (52), Expect = 8.4 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Query: 94 SKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEI 129 +K K+ +IG G + + S A +L I E+ Sbjct: 2 NKFKGNKVVLIGNGAVGS---SYAFSLVNQSIVDEL 34 >3ef6_A Toluene 1,2-dioxygenase system ferredoxin-- NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocarbons catabolism; HET: FAD; 1.80A {Pseudomonas putida} (A:118-237) Length = 120 Score = 24.3 bits (52), Expect = 9.8 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 78 PEAVLASSILDSLDL-ASKTGSKKIFIIGGGEI---YAQTIS-LAHTLYITHIEKEIEGD 132 P V + D L S T + ++ I+GGG I A T L ++ I E+ Sbjct: 5 PGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR 64 Query: 133 VFFPSIDSNIWKKQEKEIIT 152 V I + + + + Sbjct: 65 VLGRRIGAWLRGLLTELGVQ 84 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.137 0.396 Gapped Lambda K H 0.267 0.0418 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,310,833 Number of extensions: 54967 Number of successful extensions: 263 Number of sequences better than 10.0: 1 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 50 Length of query: 176 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 93 Effective length of database: 2,150,234 Effective search space: 199971762 Effective search space used: 199971762 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.2 bits)