RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780957|ref|YP_003065370.1| dihydrofolate reductase
protein [Candidatus Liberibacter asiaticus str. psy62]
(176 letters)
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Escherichia coli [TaxId: 562]}
Length = 159
Score = 145 bits (366), Expect = 3e-36
Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65
I LIAA+ + VIG MPW + +DL FK T PV+MG T++SIGR LPGR NII
Sbjct: 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLDKPVIMGRHTWESIGRPLPGRKNII 61
Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125
++ + V +D A +I +IGGG +Y Q + A LY+THI
Sbjct: 62 LSSQ-----PGTDDRVTWVKSVDEAIAACGD-VPEIMVIGGGRVYEQFLPKAQKLYLTHI 115
Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+ E+EGD FP + + W+ E A + + F I +R
Sbjct: 116 DAEVEGDTHFPDYEPDDWESVFSEFH-DADAQNSHSYCFEILER 158
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Haloferax volcanii [TaxId: 2246]}
Length = 157
Score = 136 bits (343), Expect = 1e-33
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 11/166 (6%)
Query: 5 EIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTN 63
E++ +AA+ N VIG G +PW I +D K+++S +PVV+G TF+S+ LPG
Sbjct: 1 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIADDPVVLGRTTFESMRDDLPGSAQ 60
Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYIT 123
I+++R A A+S+ +++D+A+ ++ ++IGG IYA + ++
Sbjct: 61 IVMSRSERS--FSVDTAHRAASVEEAVDIAASLDAETAYVIGGAAIYALFQPHLDRMVLS 118
Query: 124 HIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+ E EGD ++P D+ W+ + + + + + R
Sbjct: 119 RVPGEYEGDTYYPEWDAAEWELDAET------DHEGF--TLQEWVR 156
>d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Lactobacillus casei [TaxId: 1582]}
Length = 162
Score = 131 bits (331), Expect = 3e-32
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Query: 8 LIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI-GRLLPGRTNIII 66
+ A RN +IG G +PW + DL F++ T G +V+G RT++S R LP RTN+++
Sbjct: 3 FLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVL 62
Query: 67 TRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIE 126
T + AV+ + A + +++ I GG +I+ TL +T +
Sbjct: 63 THQEDYQ---AQGAVVVHDVAAVFAYAKQHLDQELVIAGGAQIFTAFKDDVDTLLVTRLA 119
Query: 127 KEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
EGD ++ + + K + + ++ +
Sbjct: 120 GSFEGDTKMIPLNWDDFTKVSSRTV--EDTNPALTHTYEVWQK 160
>d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Bacteriophage T4 [TaxId: 10665]}
Length = 193
Score = 126 bits (317), Expect = 1e-30
Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 29/186 (15%)
Query: 7 ILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65
G G+PW ++ DL+ FK+ T G ++MG +TFQS+ LLPGR++I+
Sbjct: 11 TKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTEGTIMIMGAKTFQSLPTLLPGRSHIV 70
Query: 66 ITRDNTRRA------------------SVNPEAVLASSILDSLDLASKTGSKKIFIIGGG 107
+ + + S ++ + K+ +IGG
Sbjct: 71 VCDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSVIGGP 130
Query: 108 EIYAQTISLAHTLYITHIEKE------IEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYP 161
+ + A + ++ I K ++ D F D + + E E
Sbjct: 131 ALLYAALPYADEVVVSRIVKRHRVNSTVQLDASFL-DDISKREMVETHWYK-IDEVTTL- 187
Query: 162 TRFVIY 167
+Y
Sbjct: 188 -TESVY 192
>d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 126 bits (316), Expect = 1e-30
Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 4 PEIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTG-------NPVVMGYRTFQSI- 54
+ I A+++N IG G +PW + ++ + F+ +TT N V+MG +T+ SI
Sbjct: 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIP 61
Query: 55 --GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSL--DLASKTGSKKIFIIGGGEIY 110
R L GR N++++R+ + L ++I+GG +Y
Sbjct: 62 EKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVY 121
Query: 111 AQTISLAHT--LYITHIEKEIEGDVFFPSIDSNIWK--KQEKEIITSAGEGDDYPTRFVI 166
+ ++ L++T I ++ E D FFP ID +K + +++ E +F +
Sbjct: 122 KEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEV 181
Query: 167 YDR 169
Y++
Sbjct: 182 YEK 184
>d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 178
Score = 123 bits (310), Expect = 6e-30
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 7 ILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------NPVVMGYRTFQSI-GRLL 58
I++AA ++ IG G +PW IS DLK F +T N ++MG +T+ SI R L
Sbjct: 6 IVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPL 65
Query: 59 PGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTIS--L 116
R ++I+ + + V + +L + + IF+ GG IY +
Sbjct: 66 KNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYRDALKDNF 125
Query: 117 AHTLYITHIEKE-IEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+Y+T + E IE D +FP I + + + F+I+++
Sbjct: 126 VDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCT----KNISYDFMIFEK 175
>d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 159
Score = 123 bits (310), Expect = 8e-30
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG---RLLPGRT 62
+ LI A + VIG G +PW++ D F+ +T G+ +VMG RT+ S+ R LPGR
Sbjct: 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRR 61
Query: 63 NIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYI 122
N++++R AS ++ SL+ A + + ++IGGG++YA + A +
Sbjct: 62 NVVLSRQADFMASGAE-------VVGSLEEALTS--PETWVIGGGQVYALALPYATRCEV 112
Query: 123 THIE---KEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
T ++ GD P +D W+ + E S R Y R
Sbjct: 113 TEVDIGLPREAGDALAPVLDET-WRGETGEWRFSR---SGLRYRLYSYHR 158
>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 192
Score = 123 bits (309), Expect = 1e-29
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 30/195 (15%)
Query: 1 MTRPEI-ILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQ 52
M +P + I++AA+ IG G MPW++ +++ FK +TT N V+MG +T++
Sbjct: 1 MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWE 60
Query: 53 SIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEI 109
SI R LP R NII++R + ++ + ASSI SL+L + +++FIIGG EI
Sbjct: 61 SIPQKFRPLPDRLNIILSR-SYENEIIDDNIIHASSIESSLNLV--SDVERVFIIGGAEI 117
Query: 110 YAQTIS--LAHTLYITHIE----KEIEGDVFFPSIDSNIWKKQEKE---------IITSA 154
Y + I+ L L IT IE + IE D F W KQ K ++
Sbjct: 118 YNELINNSLVSHLLITEIEHPSPESIEMDTFLK-FPLESWTKQPKSELQKFVGDTVLEDD 176
Query: 155 GEGDDYPTRFVIYDR 169
+ D+ + ++ R
Sbjct: 177 IKEGDFTYNYTLWTR 191
>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic
type {Fungus (Pneumocystis carinii) [TaxId: 4754]}
Length = 206
Score = 122 bits (307), Expect = 1e-29
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 34/201 (16%)
Query: 3 RPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNP----------VVMGYRTFQ 52
+ + LI A+T + IG +PWK+ ++ FK +T+ P V+MG +T++
Sbjct: 4 QKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWE 63
Query: 53 SI---GRLLPGRTNIIITRDNTRRASVNPEAV-----LASSILDSLDLASKTGSKKIFII 104
SI R L GR N++ITR+ + + + + S +IF+I
Sbjct: 64 SIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVI 123
Query: 105 GGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPS-IDSNIWKKQEKE------------ 149
GG ++Y + + T I K+I DVFFP W K+
Sbjct: 124 GGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGT 183
Query: 150 -IITSAGEGDDYPTRFVIYDR 169
+ D + F ++ R
Sbjct: 184 KVPHGKINEDGFDYEFEMWTR 204
>d1j3ka_ c.71.1.1 (A:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 231
Score = 113 bits (282), Expect = 1e-26
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 15 NNVIGSCGGMPWK-ISSDLKRFKSLTT--------------------------------- 40
+G+ G +PWK IS D+K F+++TT
Sbjct: 37 FRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSK 96
Query: 41 --GNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASK 95
N VVMG ++SI + L R N+I++R ++ + + + + + D + L K
Sbjct: 97 KLQNVVVMGRTNWESIPKKFKPLSNRINVILSR-TLKKEDFDEDVYIINKVEDLIVLLGK 155
Query: 96 TGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITS 153
K FI+GG +Y + + L +Y T I E DVFFP I+ N ++ +
Sbjct: 156 LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSDVY- 214
Query: 154 AGEGDDYPTRFVIYDR 169
++ F+IY +
Sbjct: 215 --TSNNTTLDFIIYKK 228
>d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Thermotoga maritima [TaxId: 2336]}
Length = 164
Score = 87.2 bits (215), Expect = 7e-19
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 8/166 (4%)
Query: 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-NPVVMGYRTFQSIGRLLPGRTN 63
++I + A+ + I S W D K F+ +TT VVMG TF+ IGR LP R N
Sbjct: 2 KVIFVLAMDVSGKIAS-SVESWSSFEDRKNFRKITTEIGNVVMGRITFEEIGRPLPERLN 60
Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISL--AHTLY 121
+++TR + + S D + G +++ +IGG ++ + + L+
Sbjct: 61 VVLTRRPKTSNNPSLVFF-NGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELF 119
Query: 122 ITHIEKEI-EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVI 166
+T +G FF + K + E ++ +
Sbjct: 120 VTVEPYVFGKGIPFFDEFEGYFPLKLLEM--RRLNERGTLFLKYSV 163
>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG,
MPG) {Human (Homo sapiens) [TaxId: 9606]}
Length = 214
Score = 28.0 bits (62), Expect = 0.45
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 151 ITSAGEGDDYPTRFVIYD-RFLSK 173
+ AGE P RF + ++S
Sbjct: 183 VGHAGEWARKPLRFYVRGSPWVSV 206
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 27.1 bits (59), Expect = 0.90
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 98 SKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSN 141
S +IF G G S A L I G++ P +
Sbjct: 37 SHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEG 80
>d2o34a1 d.96.2.2 (A:1-248) Hypothetical protein DVU1097
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 248
Score = 26.4 bits (58), Expect = 1.6
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 72 RRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110
R V P A +A +I + S ++ + GG++Y
Sbjct: 94 RLVGVGPFAAVAGTIAQMVAERFVDVSPELIVENGGDLY 132
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 26.3 bits (57), Expect = 1.6
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 86 ILDSLDLASKTGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDV 133
++ SL LA + K+I +IGGGE+ + + +T + ++ +
Sbjct: 1 MVKSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSI 50
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 25.8 bits (56), Expect = 2.1
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 98 SKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSA 154
++KI IIG G + A ++AH L I + + D F + K + + +
Sbjct: 1 ARKIGIIGLGNVGA---AVAHGL----IAQGVADDYVFIDANEAKVKADQIDFQDAM 50
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 25.1 bits (53), Expect = 3.2
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 99 KKIFIIGGG----EIYAQTISLAHTLYITHIEKE 128
+K+ ++GGG ++ +T IE
Sbjct: 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 24.3 bits (52), Expect = 6.8
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 95 KTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEI 129
G ++ +IG G + A S L I EI
Sbjct: 3 NNGGARVVVIGAGFVGA---SYVFALMNQGIADEI 34
>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate
synthase (GLMS) {Escherichia coli [TaxId: 562]}
Length = 366
Score = 24.0 bits (51), Expect = 7.7
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 108 EIYAQTISLAHTL--YITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAG 155
EIY Q ++ +TL I+H + ++ + K E I + G
Sbjct: 13 EIYEQPNAIKNTLTGRISHGQVDLSE---LGPNADELLSKVEHIQILACG 59
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 23.8 bits (50), Expect = 7.8
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 99 KKIFIIGGGEIYAQTISLAHTLYITHIEKEIEG 131
+ + I+G G + S A +L + + +I G
Sbjct: 2 QNVLIVGVGFMGG---SFAKSLRRSGFKGKIYG 31
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 23.9 bits (51), Expect = 8.2
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 92 LASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125
+ + + IIGGG+ T I+H+
Sbjct: 356 VVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHV 389
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 659,430
Number of extensions: 29027
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 35
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)