HHsearch alignment for GI: 254780958 and conserved domain: COG0330
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=326.29 Aligned_cols=276 Identities=29% Similarity=0.420 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEE----EEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 99999999999999742145388999998753311355589836645753236----87220489998267221147665
Q gi|254780958|r 53 VYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQV----EIVKVIERQQKIGGRSASVGSNS 128 (355)
Q Consensus 53 i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v----~~v~v~~~~~~~~~~~~~~~~~~ 128 (355)
T Consensus 5 ~~~~~l~~~~~~~~~~~~iv~~~~~~vv~r~G~~~~~~~~pGl~f~~P~~~~~~~~~~~~~~~~~~~d~~--------~~ 76 (291)
T COG0330 5 LIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVG--------PP 76 (291)
T ss_pred HHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCEEEEECCCEEEEECCCCCHHEEEEEEEEEEEEEECCC--------CC
T ss_conf 1259999999999634699846855999982644565058817998787520001224542036884168--------86
Q ss_pred EEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 03660684188763443422158878532012989999888777677775301000001554678877799998886312
Q gi|254780958|r 129 GLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDY 208 (355)
Q Consensus 129 ~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~ 208 (355)
T Consensus 77 ~~viT~D~~~V~vd~~v~~rv~d~~~~~~~v~~~~~~i~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~ 156 (291)
T COG0330 77 QEVITKDNVIVSVDAVVQYRVTDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADP 156 (291)
T ss_pred CEEECCCCCEEEEEEEEEEEECCHHHHEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 13780579769999999999877377436726889999999999999997343188875065588999999999976125
Q ss_pred CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34617987534301562578999999998878899999999999999877--6889999999977789999999972322
Q gi|254780958|r 209 YKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVL--GSARGEASHIRESSIAYKDRIIQEAQGE 286 (355)
Q Consensus 209 y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~--~~A~geA~~i~~~Aeay~~~~i~~A~ge 286 (355)
T Consensus 157 ~--Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~ 233 (291)
T COG0330 157 W--GIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEAD 233 (291)
T ss_pred C--CCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 8--8189998887558999999999999999999999999978788876544577899999999989877-998751036
Q ss_pred -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CEEEEECHHHH
Q ss_conf -9999999999986999999999999999983799599996799-84754034797
Q gi|254780958|r 287 -ADRFLSIYGQYVNAPTLLRKRIYLETMEGILKKAKKVIIDKKQ-SVMPYLPLNEA 340 (355)
Q Consensus 287 -a~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~~~k~ii~~~~-~~~~yLpl~~~ 340 (355)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~~-~~~~~~~ 288 (291)
T COG0330 234 AAKIIAAALREAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSAGGA-ILGLLEL 288 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHHH
T ss_conf 999998752011447899999999999987506897199966973044-5534432