HHsearch alignment for GI: 254780958 and conserved domain: COG0330

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].
Probab=100.00  E-value=0  Score=326.29  Aligned_cols=276  Identities=29%  Similarity=0.420  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEE----EEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             99999999999999742145388999998753311355589836645753236----87220489998267221147665
Q gi|254780958|r   53 VYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQV----EIVKVIERQQKIGGRSASVGSNS  128 (355)
Q Consensus        53 i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v----~~v~v~~~~~~~~~~~~~~~~~~  128 (355)
T Consensus         5 ~~~~~l~~~~~~~~~~~~iv~~~~~~vv~r~G~~~~~~~~pGl~f~~P~~~~~~~~~~~~~~~~~~~d~~--------~~   76 (291)
T COG0330           5 LIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVG--------PP   76 (291)
T ss_pred             HHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCEEEEECCCEEEEECCCCCHHEEEEEEEEEEEEEECCC--------CC
T ss_conf             1259999999999634699846855999982644565058817998787520001224542036884168--------86


Q ss_pred             EEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             03660684188763443422158878532012989999888777677775301000001554678877799998886312
Q gi|254780958|r  129 GLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDY  208 (355)
Q Consensus       129 ~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~  208 (355)
T Consensus        77 ~~viT~D~~~V~vd~~v~~rv~d~~~~~~~v~~~~~~i~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~  156 (291)
T COG0330          77 QEVITKDNVIVSVDAVVQYRVTDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADP  156 (291)
T ss_pred             CEEECCCCCEEEEEEEEEEEECCHHHHEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf             13780579769999999999877377436726889999999999999997343188875065588999999999976125


Q ss_pred             CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34617987534301562578999999998878899999999999999877--6889999999977789999999972322
Q gi|254780958|r  209 YKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVL--GSARGEASHIRESSIAYKDRIIQEAQGE  286 (355)
Q Consensus       209 y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~--~~A~geA~~i~~~Aeay~~~~i~~A~ge  286 (355)
T Consensus       157 ~--Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~  233 (291)
T COG0330         157 W--GIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEAD  233 (291)
T ss_pred             C--CCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             8--8189998887558999999999999999999999999978788876544577899999999989877-998751036


Q ss_pred             -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CEEEEECHHHH
Q ss_conf             -9999999999986999999999999999983799599996799-84754034797
Q gi|254780958|r  287 -ADRFLSIYGQYVNAPTLLRKRIYLETMEGILKKAKKVIIDKKQ-SVMPYLPLNEA  340 (355)
Q Consensus       287 -a~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~~~k~ii~~~~-~~~~yLpl~~~  340 (355)
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~~-~~~~~~~  288 (291)
T COG0330         234 AAKIIAAALREAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSAGGA-ILGLLEL  288 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHHH
T ss_conf             999998752011447899999999999987506897199966973044-5534432