HHsearch alignment for GI: 254780958 and conserved domain: COG1580
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion].
Probab=97.28 E-value=0.016 Score=35.99 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=58.7
Q ss_pred EEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 887634434221588785320129899998887776777753010000015-5467887779999888631234617987
Q gi|254780958|r 138 IVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
T Consensus 78 ~~~v~i~i~l~~~n~~~~-~el~~~~----p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~---g~~V~ 149 (159)
T COG1580 78 DRYVKIAITLEVANKALL-EELEEKK----PEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKE---GQVVK 149 (159)
T ss_pred CEEEEEEEEEEECCHHHH-HHHHHHH----HHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCEEE
T ss_conf 479999998860888899-9999756----899999999997178988368221899999999999899845---87267
Q ss_pred EEEEECCC
Q ss_conf 53430156
Q gi|254780958|r 217 TISIEDAS 224 (355)
Q Consensus 217 ~V~i~~v~ 224 (355)
T Consensus 150 dV~fT~fi 157 (159)
T COG1580 150 DVLFTNFI 157 (159)
T ss_pred EEEEEHHH
T ss_conf 78555131