HHsearch alignment for GI: 254780958 and conserved domain: COG2268
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=99.58 E-value=1.8e-13 Score=108.87 Aligned_cols=158 Identities=15% Similarity=0.203 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHH--HHHCCCHHHHHHHHHH---------HHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCC
Q ss_conf 999999999997--4214538899999875---------33113555898366457532368722048999826722114
Q gi|254780958|r 56 ILLLIGSFCAFQ--SIYIVHPDERAVELRF---------GKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASV 124 (355)
Q Consensus 56 i~~v~~~~~~~s--g~~~V~~ge~gVv~rf---------Gk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~ 124 (355)
T Consensus 19 v~i~~ilv~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~-~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~------ 91 (548)
T COG2268 19 VVILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQ-KVVRGGGAIVMPIFQTIERMSLTTIKLEVE------ 91 (548)
T ss_pred HHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCCCCCCCCCCC-CEEECCCEEEECEEEEEEEEEEEEEEEEEE------
T ss_conf 9999999999974237996188846998456457764345775-378558648843056667743157421003------
Q ss_pred CCCCEEEEECCCEEEEEEEEEEEEECCHH----HHH--HHHC----CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 76650366068418876344342215887----853--2012----9899998887776777753010000015546788
Q gi|254780958|r 125 GSNSGLILTGDQNIVGLHFSVLYVVTDPR----LYL--FNLE----NPGETLKQVSESAMREVVGRRFAVDIFRSQRQQI 194 (355)
Q Consensus 125 ~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~----~~~--~~v~----~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i 194 (355)
T Consensus 92 ---~~~v~t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~-edR~~F 167 (548)
T COG2268 92 ---IDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELN-EDRLGF 167 (548)
T ss_pred ---EEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHH
T ss_conf ---4016735997443056899883687889999999854535799999999999999999998755999874-667627
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEEECCCHH
Q ss_conf 77799998886312346179875343015625
Q gi|254780958|r 195 ALEVRNLIQKTMDYYKSGILINTISIEDASPP 226 (355)
Q Consensus 195 ~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P 226 (355)
T Consensus 168 ~~~V~~~v~~dL~k~--Gl~l~s~~I~~i~d~ 197 (548)
T COG2268 168 AQVVQEVVGDDLSKM--GLVLDSLAINDINDT 197 (548)
T ss_pred HHHHHHHHHHHHHHC--CEEEEEEEECCCCCC
T ss_conf 999999988888755--736522342465455