HHsearch alignment for GI: 254780958 and conserved domain: PRK05696
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=96.16 E-value=0.077 Score=31.51 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=49.5
Q ss_pred EEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 876344342215887853201298999988877767777530100000155-4678877799998886312346179875
Q gi|254780958|r 139 VGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRS-QRQQIALEVRNLIQKTMDYYKSGILINT 217 (355)
Q Consensus 139 V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~-~R~~i~~~v~~~lq~~l~~y~~GI~V~~ 217 (355)
T Consensus 87 Lqv~i~L--~~~d~~~~-~~i~~~----~P~IR~~ll~lls~~~~~~l~t~eGk~~Lr~e~~~~in~~l~~~~g~~~V~~ 159 (168)
T PRK05696 87 VQIKVQL--MVRGSADE-ELAKKH----IPLIENALLMTFSGADVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEK 159 (168)
T ss_pred EEEEEEE--EECCHHHH-HHHHHH----HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999--98887689-999875----5889999999996289989609878999999999999999763138875127
Q ss_pred EEEECC
Q ss_conf 343015
Q gi|254780958|r 218 ISIEDA 223 (355)
Q Consensus 218 V~i~~v 223 (355)
T Consensus 160 VlFT~F 165 (168)
T PRK05696 160 VLFTGF 165 (168)
T ss_pred EEECCC
T ss_conf 853023