HHsearch alignment for GI: 254780958 and conserved domain: TIGR01933
>TIGR01933 hflK HflK protein; InterPro: IPR010201 The accumulation of abnormal membrane proteins is something which must be avoided in order to maintain cell viability. In Escherichia coli, the membrane-bound, ATP-dependent protease FtsH plays a central role in the degradation of these abnormal proteins . Known substrates of this protease include several lambda bacteriophage proteins, the heat-shock transcription factor sigma-32, and the unassembled form of the membrane protein SecY. While FtsH is active as a protease on its own, in vivo it forms a complex with a membrane-bound HflKC heterodimer. HflKC has a generally inhibitory effect on the protease activity of FtsH, though the mechanism of this inhibition is not known. The HflK and HflC polypeptides are paralogous, and often encoded by tandem genes within bacterial genomes. This entry represents the HflK subunit of the HflKC heterodimer.; GO: 0005515 protein binding, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=581.14 Aligned_cols=269 Identities=40% Similarity=0.671 Sum_probs=257.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC-CCEEEEEEEEE-EEEEECCCCCCC---------CCCCEEEEECCCE
Q ss_conf 214538899999875331135558983664575-32368722048-999826722114---------7665036606841
Q gi|254780958|r 69 IYIVHPDERAVELRFGKPKNDVFLPGLHMMFWP-IDQVEIVKVIE-RQQKIGGRSASV---------GSNSGLILTGDQN 137 (355)
Q Consensus 69 ~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~pp-i~~v~~v~v~~-~~~~~~~~~~~~---------~~~~~~mLT~D~n 137 (355)
T Consensus 1 ~y~i~e~e~gVVlRfGk~~~-~v~PGL~~~~~fpi~~v~~VnV~~v~~~~FGF~~S~S~~~~~yv~~~~~~g~mLT~DeN 79 (285)
T TIGR01933 1 IYIIGEAERGVVLRFGKYHR-TVEPGLNWKPPFPIEEVYKVNVTAVRKIKFGFLISKSDIRENYVDELRKQGLMLTGDEN 79 (285)
T ss_pred CEECCCCCCCEEECCCCHHH-HHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCC
T ss_conf 95426333604510331022-22477653366873651006468865543152236425567898877406731104466
Q ss_pred EEEEEEEEEEEECCHHHHHHHHCCHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 88763443422158878532012989--9998887776777753010000015546788777999988863123461798
Q gi|254780958|r 138 IVGLHFSVLYVVTDPRLYLFNLENPG--ETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILI 215 (355)
Q Consensus 138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~--~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V 215 (355)
T Consensus 80 iV~V~~~VQY~I~DP~~ylf~V~~~~rr~sl~~at~Salr~~iG~~~~~~iLt~gR~~i~~~~~~~l~~~i~~Y~~Gi~v 159 (285)
T TIGR01933 80 IVNVELNVQYRITDPAKYLFSVENPERRDSLRQATDSALREVIGDSSMDSILTEGRSQIREDTKERLNEIIDNYDLGITV 159 (285)
T ss_pred EEEEEEEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 78876566666536377513676842556999999999865406202678736671678899999999987420386379
Q ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 753430156257-8999999998878899999999999999877688999999997778999999997232299999999
Q gi|254780958|r 216 NTISIEDASPPR-EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIY 294 (355)
Q Consensus 216 ~~V~i~~v~~P~-~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~ 294 (355)
T Consensus 160 ~~V~~q~A~PP~GeVk~AFdDvi~A~ed~~r~I~EA~~y~n~~~P~A~G~A~r~~~eA~gY~~~~i~~A~G~v~rF~~ll 239 (285)
T TIGR01933 160 VDVNLQSARPPEGEVKEAFDDVIAAREDEERYINEAEAYANEVVPKARGRAQRIIEEARGYKEERINRAKGDVARFTKLL 239 (285)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86541666887200167899999877889999999998760368742276577899997678998987632199999988
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECC-C-CEEEEECHH
Q ss_conf 9998699999999999999998379959999679-9-847540347
Q gi|254780958|r 295 GQYVNAPTLLRKRIYLETMEGILKKAKKVIIDKK-Q-SVMPYLPLN 338 (355)
Q Consensus 295 ~~Y~~ap~vt~~rlylet~~~vl~~~~k~ii~~~-~-~~~~yLpl~ 338 (355)
T Consensus 240 ~eY~~AP~vTr~RLYlEtm~~vl~n~~kV~~~~~~~~~~L~~lp~~ 285 (285)
T TIGR01933 240 AEYKKAPDVTRERLYLETMEKVLSNTSKVLLDDKKGKNNLLYLPLD 285 (285)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECCC
T ss_conf 9986253667865479999999704884587657777653200269