HHsearch alignment for GI: 254780958 and conserved domain: TIGR01933
>TIGR01933 hflK HflK protein; InterPro: IPR010201 The accumulation of abnormal membrane proteins is something which must be avoided in order to maintain cell viability. In Escherichia coli, the membrane-bound, ATP-dependent protease FtsH plays a central role in the degradation of these abnormal proteins . Known substrates of this protease include several lambda bacteriophage proteins, the heat-shock transcription factor sigma-32, and the unassembled form of the membrane protein SecY. While FtsH is active as a protease on its own, in vivo it forms a complex with a membrane-bound HflKC heterodimer. HflKC has a generally inhibitory effect on the protease activity of FtsH, though the mechanism of this inhibition is not known. The HflK and HflC polypeptides are paralogous, and often encoded by tandem genes within bacterial genomes. This entry represents the HflK subunit of the HflKC heterodimer.; GO: 0005515 protein binding, 0016021 integral to membrane.
Probab=94.12 E-value=0.13 Score=29.94 Aligned_cols=125 Identities=16% Similarity=0.324 Sum_probs=64.9
Q ss_pred EEEECCHH--HHHHHHCCHHHHHHH-HHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 42215887--853201298999988-8777677775301000001554-6788777999988863123461798753430
Q gi|254780958|r 146 LYVVTDPR--LYLFNLENPGETLKQ-VSESAMREVVGRRFAVDIFRSQ-RQQIALEVRNLIQKTMDYYKSGILINTISIE 221 (355)
Q Consensus 146 ~yrI~Dp~--~~~~~v~~~~~~l~~-~~esalR~vvg~~~~d~ilt~~-R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~ 221 (355)
T Consensus 98 lf~V~~~~rr~sl~~at--~Salr~~iG~~~~~~iLt~gR~--~i~~~~~~~l~-~~i~~Y~~Gi~v~--~V~~q~A~PP 170 (285)
T TIGR01933 98 LFSVENPERRDSLRQAT--DSALREVIGDSSMDSILTEGRS--QIREDTKERLN-EIIDNYDLGITVV--DVNLQSARPP 170 (285)
T ss_pred CCCCCCCHHHHHHHHHH--HHHHHHHHCCCHHHHHHCCCCH--HHHHHHHHHHH-HHHHHCCCCEEEE--EEEECCCCCC
T ss_conf 13676842556999999--9998654062026787366716--78899999999-9874203863798--6541666887
Q ss_pred C--CC-HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1--56-25789999999988788999---------------999999999998776889999999977789999
Q gi|254780958|r 222 D--AS-PPREVADAFDEVQRAEQDED---------------RFVEESNKYSNRVLGSARGEASHIRESSIAYKD 277 (355)
Q Consensus 222 ~--v~-~P~~v~~A~~~v~~A~qe~e---------------r~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~ 277 (355)
T Consensus 171 ~GeVk~AFdDvi~A~ed~~r~I~EA~~y~n~~~P~A~G~A~r~~~eA~gY~~~~i~~A~G~v~rF~~ll~eY~~ 244 (285)
T TIGR01933 171 EGEVKEAFDDVIAAREDEERYINEAEAYANEVVPKARGRAQRIIEEARGYKEERINRAKGDVARFTKLLAEYKK 244 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20016789999987788999999999876036874227657789999767899898763219999998899862