HHsearch alignment for GI: 254780958 and conserved domain: TIGR02926
>TIGR02926 AhaH ATP synthase archaeal, H subunit; InterPro: IPR014275 A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition to V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex, consisting of seven subunits, contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex, consisting of at least two subunits, forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents subunit H of the archaeal A-ATPase; it is unclear precisely where subunit H fits into the complex. More information about this protein can be found at Protein of the Month: ATP Synthases ..
Probab=92.51 E-value=0.82 Score=24.66 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHHHHHH
Q ss_conf 998878899999999999999877688999999997778999999----99723--229999999999
Q gi|254780958|r 235 EVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRI----IQEAQ--GEADRFLSIYGQ 296 (355)
Q Consensus 235 ~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~----i~~A~--gea~rf~~i~~~ 296 (355)
T Consensus 3 ~IK~AE~~A~~~i~eA~~~~~~~i~eAr~eA~~l~e~Ae~eA~~~~~e~i~~a~~~i~~E~-~~I~~~ 69 (85)
T TIGR02926 3 EIKKAEEEAEELIEEAKEEREQRIAEAREEAKELLEEAEEEAKKLKEEIIEEAEEEIEKEA-EKILEE 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 8899899999998989999986689998998888899889889999888899999999879-998866