HHsearch alignment for GI: 254780958 and conserved domain: cd03399
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.32 E-value=1.4e-11 Score=96.30 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=85.2
Q ss_pred EEECCCEEEEEEEEEEEEECCHHHHHHHH---------CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 66068418876344342215887853201---------298999988877767777530100000155467887779999
Q gi|254780958|r 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFNL---------ENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNL 201 (355)
Q Consensus 131 mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v---------~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~ 201 (355)
T Consensus 16 viT~D~v~v~v~av~~vkV~~~~~~i~~aaq~fl~~~~~~i~~~~~~~~~g~LR~ivg~mtleei~~-~R~~f~~~V~~~ 94 (128)
T cd03399 16 VITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYE-DRDKFAEQVQEV 94 (128)
T ss_pred EEECCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHH
T ss_conf 4835996899999999996897999999999883589999999999999999999985588999997-499999999999
Q ss_pred HHHHHCCCCCEEEEEEEEEECCCHHHHHHHHH
Q ss_conf 88863123461798753430156257899999
Q gi|254780958|r 202 IQKTMDYYKSGILINTISIEDASPPREVADAF 233 (355)
Q Consensus 202 lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~ 233 (355)
T Consensus 95 i~~~l~~~--GL~l~sv~I~di~d~~~y~~~l 124 (128)
T cd03399 95 VAPDLNKM--GLELDSFTIKDITDTDGYLNNL 124 (128)
T ss_pred HHHHHHHC--CCEEEEEEEEEECCCCCHHHHC
T ss_conf 99999956--8799999989857975489877