>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

Probab=100.00 E-value=3.7e-41 Score=293.20 Aligned_cols=210 Identities=26% Similarity=0.392 Sum_probs=179.3 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEE-EEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEC Q ss_conf 5388999998753311355589836645753236-872204899982672211476650366068418876344342215 Q gi|254780958|r 72 VHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQV-EIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVT 150 (355) Q Consensus 72 V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v-~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~ 150 (355) T Consensus 1 V~e~e~gVv~~fGk~~~-v~~pGlh~~~P~i~~v~~~vd~r~~~~~~~~~~---------~lT~D~~~v~v~~~v~yrI~ 70 (215) T cd03403 1 VPQYERGVVERLGKYHR-TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQE---------VITKDNVTVRVDAVLYYRVV 70 (215) T ss_pred CCCCEEEEEEECCCCCC-EECCCEEEEECCCEEEEEEEEEEEEEEECCCCE---------EECCCCCEEEEEEEEEEEEC T ss_conf 99870899998897995-778964799377518999973069976078734---------46279978999999999957 Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHH Q ss_conf 88785320129899998887776777753010000015546788777999988863123461798753430156257899 Q gi|254780958|r 151 DPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVA 230 (355) Q Consensus 151 Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~ 230 (355) T Consensus 71 dp~~~~~~v~~~~~~l~~~~~~~lR~~i~~~~~~~i~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~i~~i~~P~~v~ 147 (215) T cd03403 71 DPVKAVYGVEDYRYAISQLAQTTLRSVIGKMELDELLS-EREEINAELVEILDEATDPW--GVKVERVEIKDIILPQEIQ 147 (215) T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEECCCCHHHH T ss_conf 88999973289999999999999998853233899985-49999999999999872128--8599999997538999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH Q ss_conf 99999988788999999999999998776889999999977789999999972322999999999998699999999999 Q gi|254780958|r 231 DAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYL 310 (355) Q Consensus 231 ~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlyl 310 (355) T Consensus 148 ~ai~~~~~Aer~~~a~i~-----------~Aege~~a~~~~aea~~~~~~~~~~~~-------------------~k-~l 196 (215) T cd03403 148 EAMAKQAEAEREKRAKII-----------EAEGERQAAILLAEAAKQAAINPAALQ-------------------LR-EL 196 (215) T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHCHHHHH-------------------HH-HH T ss_conf 999999999999987899-----------949999999999999999603989999-------------------99-99 Q ss_pred HHHHHHHCCC-CEEEE Q ss_conf 9999983799-59999 Q gi|254780958|r 311 ETMEGILKKA-KKVII 325 (355) Q Consensus 311 et~~~vl~~~-~k~ii 325 (355) T Consensus 197 ea~~~~a~~~~~~~i~ 212 (215) T cd03403 197 ETLEEIAKEAASTVVF 212 (215) T ss_pred HHHHHHHHCCCCEEEE T ss_conf 9999998389977998

HHsearch alignment for GI: 254780958 and conserved domain: cd03403