HHsearch alignment for GI: 254780958 and conserved domain: cd03404
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=0 Score=446.10 Aligned_cols=262 Identities=45% Similarity=0.702 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEE-EEEEEEEEEEEECC---CCCCCCCCCEE
Q ss_conf 999999999999742145388999998753311355589836645753236-87220489998267---22114766503
Q gi|254780958|r 55 IILLLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQV-EIVKVIERQQKIGG---RSASVGSNSGL 130 (355)
Q Consensus 55 ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v-~~v~v~~~~~~~~~---~~~~~~~~~~~ 130 (355)
T Consensus 1 ii~~~~~~~~~~ss~~~V~~~e~~Vv~rfGk~~~-~~~pGlhf~iP~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (266)
T cd03404 1 LIAALLVILWLLSGFYIVQPGERGVVLRFGKYSR-TVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESL 79 (266)
T ss_pred CCHHHHHHHHHHHEEEEECCCEEEEEEECCCCCC-CCCCCEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf 9268999999996689988984899887698667-348976899477079999987789995157633444456652121
Q ss_pred EEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 66068418876344342215887853201298999988877767777530100000155467887779999888631234
Q gi|254780958|r 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYK 210 (355)
Q Consensus 131 mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~ 210 (355)
T Consensus 80 ~lT~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~l~~~~~~~lR~~ig~~~lde~l~~~R~~i~~~i~~~l~~~~~~~~ 159 (266)
T cd03404 80 MLTGDENIVDVEFAVQYRISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYK 159 (266)
T ss_pred EECCCCCEEEEEEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 56168988999999999988689988862589999999999999999726606888643799999999999999873456
Q ss_pred CEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61798753430156257899999999887889999999999999987768899999999777899999999723229999
Q gi|254780958|r 211 SGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRF 290 (355)
Q Consensus 211 ~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf 290 (355)
T Consensus 160 ~GI~v~~V~i~~i~~P~~v~~a~~~~~~A~~e~~~~~~~ae~~a~~~~~~A~~ea~~~~~~Aea~~~~~~~~aegeA~~~ 239 (266)
T cd03404 160 AGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARF 239 (266)
T ss_pred CCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86799999975269989999999999999999999999999999999999888999999999999999998724369999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 999999986999999999999999983
Q gi|254780958|r 291 LSIYGQYVNAPTLLRKRIYLETMEGIL 317 (355)
Q Consensus 291 ~~i~~~Y~~ap~vt~~rlylet~~~vl 317 (355)
T Consensus 240 ~~~~~ay~k~P~~~~~~~~l~~~~~~l 266 (266)
T cd03404 240 ESLLAEYKKAPDVTRERLYLETMEEVL 266 (266)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_conf 999999986979999999999999859