HHsearch alignment for GI: 254780958 and conserved domain: cd03404
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.59 E-value=0.0073 Score=38.34 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=76.5
Q ss_pred HHHHCCHHHHHHHHH--HHHHHHHHHCCCCCCCCCC-CHHHH----HHHHHHHHHHHHCCCCCEEEEE--EEEEECCCHH
Q ss_conf 320129899998887--7767777530100000155-46788----7779999888631234617987--5343015625
Q gi|254780958|r 156 LFNLENPGETLKQVS--ESAMREVVGRRFAVDIFRS-QRQQI----ALEVRNLIQKTMDYYKSGILIN--TISIEDASPP 226 (355)
Q Consensus 156 ~~~v~~~~~~l~~~~--esalR~vvg~~~~d~ilt~-~R~~i----~~~v~~~lq~~l~~y~~GI~V~--~V~i~~v~~P 226 (355)
T Consensus 95 ~yrI~dp~~~~~~~~~~~~~l~~~~-~~~lR~~ig~~~lde~l~~~R~~i~~~i~~~l~~~---~~~~~~GI~v~~V~i~ 170 (266)
T cd03404 95 QYRISDPYDYLFNVRDPEGTLRQAA-ESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAI---LDAYKAGIEIVGVNLQ 170 (266)
T ss_pred EEEECCHHHHHHHCCCHHHHHHHHH-HHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHH---HHCCCCCEEEEEEEEE
T ss_conf 9998868998886258999999999-99999997266068886437999999999999998---7345686799999975
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 7-899999999887889999999999999987768899999999777899999999723229999999999986999999
Q gi|254780958|r 227 R-EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLR 305 (355)
Q Consensus 227 ~-~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~ 305 (355)
T Consensus 171 ~i~~P~---~v~~a~~~~~~----A~~e~~~~~~~ae~~a~~~~~~A~~ea~~~~~~Aea~~~~--~~~~aeg---eA~~ 238 (266)
T cd03404 171 DADPPE---EVQDAFDDVNK----ARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEE--VIAEAQG---EAAR 238 (266)
T ss_pred ECCCCH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHH
T ss_conf 269989---99999999999----9999999999999999999999888999999999999999--9987243---6999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780958|r 306 KRIYLETMEG 315 (355)
Q Consensus 306 ~rlylet~~~ 315 (355)
T Consensus 239 ~~~~~~ay~k 248 (266)
T cd03404 239 FESLLAEYKK 248 (266)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986