HHsearch alignment for GI: 254780958 and conserved domain: cd03405
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.92 E-value=0.00051 Score=46.03 Aligned_cols=147 Identities=21% Similarity=0.276 Sum_probs=81.9
Q ss_pred EEEECCHHHHHHH-HCC-HHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEE
Q ss_conf 4221588785320-129-899998887-77677775301000001554678877799998886-3123461798753430
Q gi|254780958|r 146 LYVVTDPRLYLFN-LEN-PGETLKQVS-ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT-MDYYKSGILINTISIE 221 (355)
Q Consensus 146 ~yrI~Dp~~~~~~-v~~-~~~~l~~~~-esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~-l~~y~~GI~V~~V~i~ 221 (355)
T Consensus 79 ~~~v~~~~~~~~~~i~~~~~salR~vig~~~~~~vl~~~-R~~-i---~~~i~~~l~~~l~~~GI~V~--~V~I~~i~~P 151 (242)
T cd03405 79 YQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGE-RGE-L---MEEIRRAVAEEAKELGIEVV--DVRIKRIDLP 151 (242)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC-HHH-H---HHHHHHHHHHHHHHCCCEEE--EEEEEECCCC
T ss_conf 998568466799999999999999996367488874226-999-9---99999999998876595699--9998646999
Q ss_pred CCCHHHHH---HHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15625789---999----999988788--999999999999998776889999999977789999999972322999999
Q gi|254780958|r 222 DASPPREV---ADA----FDEVQRAEQ--DEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLS 292 (355)
Q Consensus 222 ~v~~P~~v---~~A----~~~v~~A~q--e~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~ 292 (355)
T Consensus 152 ~~-v~~Ai~~~~~aere~~a~~~~ae~~~ea~~~~a~a~~~~~~~~AeA~~~a~~~~A~geAea~~~~~~a~~~~pe~~~ 230 (242)
T cd03405 152 EE-VSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYA 230 (242)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 89-99999999999999999999989999989989889999999877889999999867899999999999865968999
Q ss_pred HH---HHHHHC
Q ss_conf 99---999869
Q gi|254780958|r 293 IY---GQYVNA 300 (355)
Q Consensus 293 i~---~~Y~~a 300 (355)
T Consensus 231 ~~~~lea~k~~ 241 (242)
T cd03405 231 FYRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999952