HHsearch alignment for GI: 254780958 and conserved domain: cd03405

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.92  E-value=0.00051  Score=46.03  Aligned_cols=147  Identities=21%  Similarity=0.276  Sum_probs=81.9

Q ss_pred             EEEECCHHHHHHH-HCC-HHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEE
Q ss_conf             4221588785320-129-899998887-77677775301000001554678877799998886-3123461798753430
Q gi|254780958|r  146 LYVVTDPRLYLFN-LEN-PGETLKQVS-ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT-MDYYKSGILINTISIE  221 (355)
Q Consensus       146 ~yrI~Dp~~~~~~-v~~-~~~~l~~~~-esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~-l~~y~~GI~V~~V~i~  221 (355)
T Consensus        79 ~~~v~~~~~~~~~~i~~~~~salR~vig~~~~~~vl~~~-R~~-i---~~~i~~~l~~~l~~~GI~V~--~V~I~~i~~P  151 (242)
T cd03405          79 YQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGE-RGE-L---MEEIRRAVAEEAKELGIEVV--DVRIKRIDLP  151 (242)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC-HHH-H---HHHHHHHHHHHHHHCCCEEE--EEEEEECCCC
T ss_conf             998568466799999999999999996367488874226-999-9---99999999998876595699--9998646999


Q ss_pred             CCCHHHHH---HHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             15625789---999----999988788--999999999999998776889999999977789999999972322999999
Q gi|254780958|r  222 DASPPREV---ADA----FDEVQRAEQ--DEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLS  292 (355)
Q Consensus       222 ~v~~P~~v---~~A----~~~v~~A~q--e~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~  292 (355)
T Consensus       152 ~~-v~~Ai~~~~~aere~~a~~~~ae~~~ea~~~~a~a~~~~~~~~AeA~~~a~~~~A~geAea~~~~~~a~~~~pe~~~  230 (242)
T cd03405         152 EE-VSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYA  230 (242)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             89-99999999999999999999989999989989889999999877889999999867899999999999865968999


Q ss_pred             HH---HHHHHC
Q ss_conf             99---999869
Q gi|254780958|r  293 IY---GQYVNA  300 (355)
Q Consensus       293 i~---~~Y~~a  300 (355)
T Consensus       231 ~~~~lea~k~~  241 (242)
T cd03405         231 FYRSLEAYRNS  241 (242)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999952