HHsearch alignment for GI: 254780958 and conserved domain: pfam03748

>pfam03748 FliL Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.
Probab=91.97  E-value=0.95  Score=24.24  Aligned_cols=75  Identities=12%  Similarity=0.140  Sum_probs=47.2

Q ss_pred             EEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             887634434221588785320129899998887776777753010000015-5467887779999888631234617987
Q gi|254780958|r  138 IVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGILIN  216 (355)
Q Consensus       138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI~V~  216 (355)
T Consensus        67 ~l~~~i~l~~--~~~~~~-~~~~~~~p----~Ird~ii~~l~~~~~~dl~~~~g~~~Lk~~l~~~in~~l~~~----~V~  135 (145)
T pfam03748        67 YLKISIALEV--RDPKAA-EELEKHMP----LIRDAILMLLSSKTAEDLSTPEGKEKLKEELLERINEVLLEG----EVE  135 (145)
T ss_pred             EEEEEEEEEE--CCHHHH-HHHHHCCH----HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCC----CEE
T ss_conf             9999999997--688789-98886263----337999999865882121493379999999999999873758----546


Q ss_pred             EEEEECC
Q ss_conf             5343015
Q gi|254780958|r  217 TISIEDA  223 (355)
Q Consensus       217 ~V~i~~v  223 (355)
T Consensus       136 ~V~ft~f  142 (145)
T pfam03748       136 DVLFTSF  142 (145)
T ss_pred             EEEEEEE
T ss_conf             9988850