HHsearch alignment for GI: 254780958 and conserved domain: pfam03748
>pfam03748 FliL Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.
Probab=91.97 E-value=0.95 Score=24.24 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=47.2
Q ss_pred EEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 887634434221588785320129899998887776777753010000015-5467887779999888631234617987
Q gi|254780958|r 138 IVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
T Consensus 67 ~l~~~i~l~~--~~~~~~-~~~~~~~p----~Ird~ii~~l~~~~~~dl~~~~g~~~Lk~~l~~~in~~l~~~----~V~ 135 (145)
T pfam03748 67 YLKISIALEV--RDPKAA-EELEKHMP----LIRDAILMLLSSKTAEDLSTPEGKEKLKEELLERINEVLLEG----EVE 135 (145)
T ss_pred EEEEEEEEEE--CCHHHH-HHHHHCCH----HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCC----CEE
T ss_conf 9999999997--688789-98886263----337999999865882121493379999999999999873758----546
Q ss_pred EEEEECC
Q ss_conf 5343015
Q gi|254780958|r 217 TISIEDA 223 (355)
Q Consensus 217 ~V~i~~v 223 (355)
T Consensus 136 ~V~ft~f 142 (145)
T pfam03748 136 DVLFTSF 142 (145)
T ss_pred EEEEEEE
T ss_conf 9988850