Query gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 355 No_of_seqs 241 out of 2352 Neff 7.0 Searched_HMMs 23785 Date Tue May 31 23:40:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780958.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3bk6_A PH stomatin; archaea, t 99.9 1.6E-25 6.7E-30 187.7 16.2 176 101-319 2-177 (188) 2 2rpb_A Hypothetical membrane p 99.8 1.4E-19 5.7E-24 148.2 7.5 111 106-228 3-113 (113) 3 1win_A Flotillin 2; BAND 7 dom 99.7 8.4E-18 3.5E-22 136.3 3.7 124 104-239 6-138 (143) 4 2kk7_A V-type ATP synthase sub 92.2 0.33 1.4E-05 25.9 6.1 39 251-289 9-47 (52) 5 3k5b_E V-type ATP synthase sub 87.9 1.2 5.1E-05 22.1 7.8 28 239-266 12-39 (188) 6 2k88_A Vacuolar proton pump su 87.0 1.3 5.3E-05 22.0 5.7 32 258-289 11-42 (60) 7 1l2p_A ATP synthase B chain; a 83.3 2 8.5E-05 20.6 8.3 43 237-286 5-47 (61) 8 2dm9_A V-type ATP synthase sub 67.7 0.75 3.2E-05 23.5 -0.4 22 241-262 17-38 (198) 9 2k6i_A Uncharacterized protein 50.3 2.4 0.0001 20.1 -0.3 37 230-266 15-51 (56) 10 2khk_A ATP synthase subunit B; 33.1 19 0.00079 14.2 2.2 22 250-271 28-49 (53) 11 3ixz_B Potassium-transporting 29.7 21 0.0009 13.8 2.8 17 85-101 72-88 (290) 12 2acm_B Mucin-1; auto-catalytic 23.9 27 0.0011 13.1 3.1 36 191-228 17-52 (55) 13 2zxe_B Na+,K+-ATPase beta subu 23.7 27 0.0011 13.1 3.6 19 85-103 68-86 (305) 14 2eyq_A TRCF, transcription-rep 22.4 12 0.00051 15.4 -0.5 28 279-306 1032-1062(1151) 15 3hjh_A Transcription-repair-co 22.1 26 0.0011 13.2 1.2 20 282-301 390-409 (483) No 1 >3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Probab=99.94 E-value=1.6e-25 Score=187.68 Aligned_cols=176 Identities=19% Similarity=0.317 Sum_probs=145.8 Q ss_pred CCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 53236872204899982672211476650366068418876344342215887853201298999988877767777530 Q gi|254780958|r 101 PIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGR 180 (355) Q Consensus 101 pi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~ 180 (355) -|+++.++|++.+.++++.+. ++|+|++.|.++++|+|||+||.+|++++.++...+...+++++|+++|+ T Consensus 2 ii~~~~~vD~R~~~~~i~~q~---------v~T~D~~~v~v~~~v~yrI~dp~~~~~~~~~~~~~l~~~~~~~lr~~i~~ 72 (188) T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQE---------TITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQ 72 (188) T ss_dssp CEEECCCCCSSCEEEEEEEEE---------EECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHT T ss_pred EEEEEEEEEEEEEEEECCCCE---------EECCCCCEEEEEEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCC T ss_conf 688638997257876179865---------77389998999899999989879998744799999999999999988501 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10000015546788777999988863123461798753430156257899999999887889999999999999987768 Q gi|254780958|r 181 RFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGS 260 (355) Q Consensus 181 ~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~ 260 (355) +++++++++ |..+...+...+...++.| ||+|.+|+|+++.||+++..||++++.|++++++.+.+|++++.. ++ T Consensus 73 ~~l~eil~~-r~~i~~~~~~~~~~~~~~~--Gi~v~~V~I~di~~p~~v~~ai~~~~~Ae~e~~a~~~~Ae~e~~~--ae 147 (188) T 3bk6_A 73 AHLDELLSE-RDKLNMQLQRIIDEATDPW--GIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA--AE 147 (188) T ss_dssp SCHHHHHHC-HHHHHHHHHHHHHHHTGGG--TEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHC--CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH T ss_conf 658999864-7777678999999888732--869999873467998779999999999999999999998999999--99 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC Q ss_conf 89999999977789999999972322999999999998699999999999999998379 Q gi|254780958|r 261 ARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYLETMEGILKK 319 (355) Q Consensus 261 A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~ 319 (355) +.++|+++ +..+|...+.| |+|||+++.++ T Consensus 148 ~~~~aa~~----------------------------~~e~~~a~~lr-~~q~i~~i~~~ 177 (188) T 3bk6_A 148 KLREAAEI----------------------------ISEHPMALQLR-TLQTISDVAGD 177 (188) T ss_dssp HHHHHHHH----------------------------HHHCTTHHHHH-HTTC------- T ss_pred HHHHHHHH----------------------------HHCCHHHHHHH-HHHHHHHHHHC T ss_conf 99999999----------------------------85299999999-99999999716 No 2 >2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Probab=99.79 E-value=1.4e-19 Score=148.19 Aligned_cols=111 Identities=20% Similarity=0.390 Sum_probs=101.9 Q ss_pred EEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 87220489998267221147665036606841887634434221588785320129899998887776777753010000 Q gi|254780958|r 106 EIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVD 185 (355) Q Consensus 106 ~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ 185 (355) .+||.+.+.++++.+. |+|+|++.|.|+++++|||+||.+|+|++.|+..++..++++++|+++|++++++ T Consensus 3 ~kVD~R~~~~d~~~q~---------vlT~D~~~v~vd~~v~yrI~Dp~~~~~~v~~~~~al~~~~~~~lr~~i~~~~l~~ 73 (113) T 2rpb_A 3 DHVDLREHVIDVPPQE---------VICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDE 73 (113) T ss_dssp SCCCCCCEEEECCCEE---------EECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTH T ss_pred CCEEEEEEEECCCCCE---------EECCCCCEEEEEEEEEEEECCHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 7177478844389856---------4858998999999999998533774334699999999999999999853166999 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHH Q ss_conf 0155467887779999888631234617987534301562578 Q gi|254780958|r 186 IFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE 228 (355) Q Consensus 186 ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~ 228 (355) +++ +|.+++.++++.+++.++.| ||+|++|+|++++||++ T Consensus 74 l~~-~r~~i~~~i~~~~~~~~~~~--GI~V~~V~ikdi~lP~e 113 (113) T 2rpb_A 74 TLS-GRDIINARLREELDKITDRW--GVKITRVEIQRIDPPKD 113 (113) T ss_dssp HHH-CHHHHHHHHHHHHHHHHGGG--TEECCCEEECCCBCCCC T ss_pred HHC-CHHHHHHHHHHHHHHHHHHC--CEEEEEEEEEEEECCCC T ss_conf 860-79999999999999999971--97999999984108589 No 3 >1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Probab=99.69 E-value=8.4e-18 Score=136.30 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=107.1 Q ss_pred EEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHH---------HHCCHHHHHHHHHHHHH Q ss_conf 368722048999826722114766503660684188763443422158878532---------01298999988877767 Q gi|254780958|r 104 QVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLF---------NLENPGETLKQVSESAM 174 (355) Q Consensus 104 ~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~---------~v~~~~~~l~~~~esal 174 (355) ++.+++.+.+.+++..+. .+|+|+..|+|+++++|||.||.++++ .+.+++..|+..++++| T Consensus 6 ~~~rvsl~~~~l~~~~q~---------v~T~D~v~i~V~a~v~~rI~d~~~~v~~a~~~~~~~~~~~~~~~i~~~~~~~l 76 (143) T 1win_A 6 SGQRISLEIMTLQPRCED---------VETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHL 76 (143) T ss_dssp CCCSCCCSCEEECCCEEE---------EECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHH T ss_pred CEEEEEEEEEEECCCCEE---------EECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 317875167885388707---------78588977974369999994959999999998624778899999999999999 Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 77753010000015546788777999988863123461798753430156257899999999887 Q gi|254780958|r 175 REVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRA 239 (355) Q Consensus 175 R~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A 239 (355) |+++|+++++++++ +|++|+.++++.+++.++.| ||+|++|+|+++++|+++.+|+.....| T Consensus 77 R~vi~~~~~~el~~-~R~~i~~~v~~~i~~~l~~~--Gi~V~~v~I~dI~~~~~~~~a~~~~~~A 138 (143) T 1win_A 77 RSILGTLTVEQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGKTQTS 138 (143) T ss_dssp HHHHHHSCHHHHHH-THHHHHHHHHHHHHHHHTTT--TEEEEEEECCCEECTTCHHHHHCCCCCC T ss_pred HHHHHHCCHHHHHH-CHHHHHHHHHHHHHHHHHHC--CEEEEEEEEEEECCCHHHHHHHHHHHHH T ss_conf 99998637888860-89999999999999998765--9499999999607828999999999986 No 4 >2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} Probab=92.21 E-value=0.33 Score=25.85 Aligned_cols=39 Identities=31% Similarity=0.506 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998776889999999977789999999972322999 Q gi|254780958|r 251 NKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 (355) Q Consensus 251 e~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r 289 (355) +....+|+-.|..+|.+|+.+|+.++..++.+|.-||+. T Consensus 9 eKI~sKIleDA~~~A~kI~~EAqkEk~~il~KAkeEAEk 47 (52) T 2kk7_A 9 DKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999888689999989998899999998999998 No 5 >3k5b_E V-type ATP synthase subunit E; right handed coiled coil, vacuolar ATPase/synthase, V-type ATPase/synthase, A-type ATPase/synthase; 3.10A {Thermus thermophilus HB8} Probab=87.92 E-value=1.2 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7889999999999999987768899999 Q gi|254780958|r 239 AEQDEDRFVEESNKYSNRVLGSARGEAS 266 (355) Q Consensus 239 A~qe~er~i~eAe~~a~~i~~~A~geA~ 266 (355) |+++.+..+.+|+..+.+++.+|+.++. T Consensus 12 a~~~~~~i~~eA~~~a~~i~~~a~~~~~ 39 (188) T 3k5b_E 12 VEAEIQALLQEAEAKAEAVKREAEEKAK 39 (188) T ss_dssp HHHHHHHHHHHTTSSTTHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999 No 6 >2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} Probab=87.00 E-value=1.3 Score=21.98 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76889999999977789999999972322999 Q gi|254780958|r 258 LGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 (355) Q Consensus 258 ~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r 289 (355) +..|+.+|..|+.+|.-++.+.+-.|+.||+. T Consensus 11 LL~AEk~A~eiV~eARk~k~~rLKqAK~EA~~ 42 (60) T 2k88_A 11 LLQAEKEAHEIVSKARKYRQDKLKQAKTDAAK 42 (60) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988999999999999999888899999999 No 7 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Probab=83.31 E-value=2 Score=20.62 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88788999999999999998776889999999977789999999972322 Q gi|254780958|r 237 QRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGE 286 (355) Q Consensus 237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~ge 286 (355) ..|+.+....+.+|+..++.|+.+|+.+ |..++.++++.|+.+ T Consensus 5 ~eAk~eAa~Ii~qA~kra~qIveeAk~~-------A~~Ea~rIi~~A~~e 47 (61) T 1l2p_A 5 KKAKAEAQVIIEQANKRRSQILDEAKAE-------AEQERTKIVAQAQAE 47 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH T ss_conf 9999999999999997799999999999-------999999999989999 No 8 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Probab=67.70 E-value=0.75 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=7.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999998776889 Q gi|254780958|r 241 QDEDRFVEESNKYSNRVLGSAR 262 (355) Q Consensus 241 qe~er~i~eAe~~a~~i~~~A~ 262 (355) ++.+..+.+|++.+.+++.+|+ T Consensus 17 ~~a~~I~~eA~~~a~~i~~ea~ 38 (198) T 2dm9_A 17 RKIEYILNEARQQAEKIKEEAR 38 (198) T ss_dssp ---------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999 No 9 >2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii} Probab=50.28 E-value=2.4 Score=20.13 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999887889999999999999987768899999 Q gi|254780958|r 230 ADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEAS 266 (355) Q Consensus 230 ~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~ 266 (355) .+|+.+|--|++..-+.|.||...+.+|.++|--||. T Consensus 15 meaikevklaeeqavkeieeaknraeqikaeaieeak 51 (56) T 2k6i_A 15 MEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56) T ss_dssp TTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998888999999999988189998899999998 No 10 >2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12} Probab=33.11 E-value=19 Score=14.17 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998776889999999977 Q gi|254780958|r 250 SNKYSNRVLGSARGEASHIRES 271 (355) Q Consensus 250 Ae~~a~~i~~~A~geA~~i~~~ 271 (355) |+..+..++.+|+.+|..|+.+ T Consensus 28 A~~~~~~~l~eAK~~A~~iI~q 49 (53) T 2khk_A 28 AKASATDQLKKAKAEAQVIIEQ 49 (53) T ss_dssp HHHHHHHHHHHHHHHHSCCCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999997 No 11 >3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} Probab=29.73 E-value=21 Score=13.81 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=10.4 Q ss_pred HHCCCCCCCCCEECCCC Q ss_conf 31135558983664575 Q gi|254780958|r 85 KPKNDVFLPGLHMMFWP 101 (355) Q Consensus 85 k~~~~v~~pGlh~~~pp 101 (355) +++.....|||-|.|.+ T Consensus 72 ~~q~~~s~PGL~~rP~~ 88 (290) T 3ixz_B 72 DYQDQLKSPGVTLRPDV 88 (290) T ss_pred CCCCCCCCCCEEEECCC T ss_conf 86536889964643799 No 12 >2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens} Probab=23.86 E-value=27 Score=13.12 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHH Q ss_conf 67887779999888631234617987534301562578 Q gi|254780958|r 191 RQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE 228 (355) Q Consensus 191 R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~ 228 (355) -..+..+..+.-.+..+.| -+.|.+|.++++.+|.. T Consensus 17 a~~VktQf~q~k~eAa~rY--nL~IS~vsV~dv~fPsS 52 (55) T 2acm_B 17 VHDVETQFNQYKTEAASRY--NLTISDVSVSDVPFPFS 52 (55) T ss_dssp HHHHHHHHHHHHHHHHHHH--CCCEEEEEEECC----- T ss_pred HHHHHHHHHHHHHHHHHCC--CEEEEEEEEEECCCCCC T ss_conf 7888999998766454302--51652458875138876 No 13 >2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B* Probab=23.74 E-value=27 Score=13.10 Aligned_cols=19 Identities=32% Similarity=0.411 Sum_probs=11.8 Q ss_pred HHCCCCCCCCCEECCCCCC Q ss_conf 3113555898366457532 Q gi|254780958|r 85 KPKNDVFLPGLHMMFWPID 103 (355) Q Consensus 85 k~~~~v~~pGlh~~~ppi~ 103 (355) ++......|||-+.|-+-. T Consensus 68 k~~~~~s~PGL~~rP~~~~ 86 (305) T 2zxe_B 68 KYQDRVAPPGLSHAPYAIK 86 (305) T ss_dssp SCCTTTCSCCBCCSSCCSS T ss_pred CCEECCCCCCEEECCCCCC T ss_conf 7532257981254548997 No 14 >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Probab=22.37 E-value=12 Score=15.43 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=12.3 Q ss_pred HHHHHHHHH--HHH-HHHHHHHHHCHHHHHH Q ss_conf 999723229--999-9999999869999999 Q gi|254780958|r 279 IIQEAQGEA--DRF-LSIYGQYVNAPTLLRK 306 (355) Q Consensus 279 ~i~~A~gea--~rf-~~i~~~Y~~ap~vt~~ 306 (355) +++.+..+. ..+ ..+.+-|..-|+-+.. T Consensus 1032 r~~~~~~~~~~~~~~~el~drfG~~p~~~~~ 1062 (1151) T 2eyq_A 1032 RIASAKTENELEEIKVELIDRFGLLPDPART 1062 (1151) T ss_dssp HHHHCCSHHHHHHHHHHHHHHHCSCCHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 9972999999999999999875999889999 No 15 >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A* Probab=22.10 E-value=26 Score=13.19 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHHHHHCH Q ss_conf 72322999999999998699 Q gi|254780958|r 282 EAQGEADRFLSIYGQYVNAP 301 (355) Q Consensus 282 ~A~gea~rf~~i~~~Y~~ap 301 (355) ..++.++|+..++.++.-.+ T Consensus 390 ~s~~~~~rL~~lL~~~~i~~ 409 (483) T 3hjh_A 390 ESEGRREALGELLARIKIAP 409 (483) T ss_dssp SCSSTTTTTHHHHGGGTCCC T ss_pred CCHHHHHHHHHHHHHCCCCC T ss_conf 98789999999998769983 Done!