Query         gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 355
No_of_seqs    241 out of 2352
Neff          7.0 
Searched_HMMs 23785
Date          Tue May 31 23:40:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780958.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3bk6_A PH stomatin; archaea, t  99.9 1.6E-25 6.7E-30  187.7  16.2  176  101-319     2-177 (188)
  2 2rpb_A Hypothetical membrane p  99.8 1.4E-19 5.7E-24  148.2   7.5  111  106-228     3-113 (113)
  3 1win_A Flotillin 2; BAND 7 dom  99.7 8.4E-18 3.5E-22  136.3   3.7  124  104-239     6-138 (143)
  4 2kk7_A V-type ATP synthase sub  92.2    0.33 1.4E-05   25.9   6.1   39  251-289     9-47  (52)
  5 3k5b_E V-type ATP synthase sub  87.9     1.2 5.1E-05   22.1   7.8   28  239-266    12-39  (188)
  6 2k88_A Vacuolar proton pump su  87.0     1.3 5.3E-05   22.0   5.7   32  258-289    11-42  (60)
  7 1l2p_A ATP synthase B chain; a  83.3       2 8.5E-05   20.6   8.3   43  237-286     5-47  (61)
  8 2dm9_A V-type ATP synthase sub  67.7    0.75 3.2E-05   23.5  -0.4   22  241-262    17-38  (198)
  9 2k6i_A Uncharacterized protein  50.3     2.4  0.0001   20.1  -0.3   37  230-266    15-51  (56)
 10 2khk_A ATP synthase subunit B;  33.1      19 0.00079   14.2   2.2   22  250-271    28-49  (53)
 11 3ixz_B Potassium-transporting   29.7      21  0.0009   13.8   2.8   17   85-101    72-88  (290)
 12 2acm_B Mucin-1; auto-catalytic  23.9      27  0.0011   13.1   3.1   36  191-228    17-52  (55)
 13 2zxe_B Na+,K+-ATPase beta subu  23.7      27  0.0011   13.1   3.6   19   85-103    68-86  (305)
 14 2eyq_A TRCF, transcription-rep  22.4      12 0.00051   15.4  -0.5   28  279-306  1032-1062(1151)
 15 3hjh_A Transcription-repair-co  22.1      26  0.0011   13.2   1.2   20  282-301   390-409 (483)

No 1  
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.94  E-value=1.6e-25  Score=187.68  Aligned_cols=176  Identities=19%  Similarity=0.317  Sum_probs=145.8

Q ss_pred             CCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             53236872204899982672211476650366068418876344342215887853201298999988877767777530
Q gi|254780958|r  101 PIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGR  180 (355)
Q Consensus       101 pi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~  180 (355)
                      -|+++.++|++.+.++++.+.         ++|+|++.|.++++|+|||+||.+|++++.++...+...+++++|+++|+
T Consensus         2 ii~~~~~vD~R~~~~~i~~q~---------v~T~D~~~v~v~~~v~yrI~dp~~~~~~~~~~~~~l~~~~~~~lr~~i~~   72 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQE---------TITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQ   72 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEE---------EECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEEEEEEEEEECCCCE---------EECCCCCEEEEEEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             688638997257876179865---------77389998999899999989879998744799999999999999988501


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10000015546788777999988863123461798753430156257899999999887889999999999999987768
Q gi|254780958|r  181 RFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGS  260 (355)
Q Consensus       181 ~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~  260 (355)
                      +++++++++ |..+...+...+...++.|  ||+|.+|+|+++.||+++..||++++.|++++++.+.+|++++..  ++
T Consensus        73 ~~l~eil~~-r~~i~~~~~~~~~~~~~~~--Gi~v~~V~I~di~~p~~v~~ai~~~~~Ae~e~~a~~~~Ae~e~~~--ae  147 (188)
T 3bk6_A           73 AHLDELLSE-RDKLNMQLQRIIDEATDPW--GIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA--AE  147 (188)
T ss_dssp             SCHHHHHHC-HHHHHHHHHHHHHHHTGGG--TEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHHHHHHHC--CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf             658999864-7777678999999888732--869999873467998779999999999999999999998999999--99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
Q ss_conf             89999999977789999999972322999999999998699999999999999998379
Q gi|254780958|r  261 ARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYLETMEGILKK  319 (355)
Q Consensus       261 A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~  319 (355)
                      +.++|+++                            +..+|...+.| |+|||+++.++
T Consensus       148 ~~~~aa~~----------------------------~~e~~~a~~lr-~~q~i~~i~~~  177 (188)
T 3bk6_A          148 KLREAAEI----------------------------ISEHPMALQLR-TLQTISDVAGD  177 (188)
T ss_dssp             HHHHHHHH----------------------------HHHCTTHHHHH-HTTC-------
T ss_pred             HHHHHHHH----------------------------HHCCHHHHHHH-HHHHHHHHHHC
T ss_conf             99999999----------------------------85299999999-99999999716


No 2  
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.79  E-value=1.4e-19  Score=148.19  Aligned_cols=111  Identities=20%  Similarity=0.390  Sum_probs=101.9

Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             87220489998267221147665036606841887634434221588785320129899998887776777753010000
Q gi|254780958|r  106 EIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVD  185 (355)
Q Consensus       106 ~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~  185 (355)
                      .+||.+.+.++++.+.         |+|+|++.|.|+++++|||+||.+|+|++.|+..++..++++++|+++|++++++
T Consensus         3 ~kVD~R~~~~d~~~q~---------vlT~D~~~v~vd~~v~yrI~Dp~~~~~~v~~~~~al~~~~~~~lr~~i~~~~l~~   73 (113)
T 2rpb_A            3 DHVDLREHVIDVPPQE---------VICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDE   73 (113)
T ss_dssp             SCCCCCCEEEECCCEE---------EECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred             CCEEEEEEEECCCCCE---------EECCCCCEEEEEEEEEEEECCHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             7177478844389856---------4858998999999999998533774334699999999999999999853166999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHH
Q ss_conf             0155467887779999888631234617987534301562578
Q gi|254780958|r  186 IFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE  228 (355)
Q Consensus       186 ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~  228 (355)
                      +++ +|.+++.++++.+++.++.|  ||+|++|+|++++||++
T Consensus        74 l~~-~r~~i~~~i~~~~~~~~~~~--GI~V~~V~ikdi~lP~e  113 (113)
T 2rpb_A           74 TLS-GRDIINARLREELDKITDRW--GVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHH-CHHHHHHHHHHHHHHHHGGG--TEECCCEEECCCBCCCC
T ss_pred             HHC-CHHHHHHHHHHHHHHHHHHC--CEEEEEEEEEEEECCCC
T ss_conf             860-79999999999999999971--97999999984108589


No 3  
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.69  E-value=8.4e-18  Score=136.30  Aligned_cols=124  Identities=15%  Similarity=0.175  Sum_probs=107.1

Q ss_pred             EEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHH---------HHCCHHHHHHHHHHHHH
Q ss_conf             368722048999826722114766503660684188763443422158878532---------01298999988877767
Q gi|254780958|r  104 QVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLF---------NLENPGETLKQVSESAM  174 (355)
Q Consensus       104 ~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~---------~v~~~~~~l~~~~esal  174 (355)
                      ++.+++.+.+.+++..+.         .+|+|+..|+|+++++|||.||.++++         .+.+++..|+..++++|
T Consensus         6 ~~~rvsl~~~~l~~~~q~---------v~T~D~v~i~V~a~v~~rI~d~~~~v~~a~~~~~~~~~~~~~~~i~~~~~~~l   76 (143)
T 1win_A            6 SGQRISLEIMTLQPRCED---------VETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHL   76 (143)
T ss_dssp             CCCSCCCSCEEECCCEEE---------EECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEEECCCCEE---------EECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             317875167885388707---------78588977974369999994959999999998624778899999999999999


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             77753010000015546788777999988863123461798753430156257899999999887
Q gi|254780958|r  175 REVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRA  239 (355)
Q Consensus       175 R~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A  239 (355)
                      |+++|+++++++++ +|++|+.++++.+++.++.|  ||+|++|+|+++++|+++.+|+.....|
T Consensus        77 R~vi~~~~~~el~~-~R~~i~~~v~~~i~~~l~~~--Gi~V~~v~I~dI~~~~~~~~a~~~~~~A  138 (143)
T 1win_A           77 RSILGTLTVEQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHHSCHHHHHH-THHHHHHHHHHHHHHHHTTT--TEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHHHCCHHHHHH-CHHHHHHHHHHHHHHHHHHC--CEEEEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             99998637888860-89999999999999998765--9499999999607828999999999986


No 4  
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=92.21  E-value=0.33  Score=25.85  Aligned_cols=39  Identities=31%  Similarity=0.506  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998776889999999977789999999972322999
Q gi|254780958|r  251 NKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADR  289 (355)
Q Consensus       251 e~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r  289 (355)
                      +....+|+-.|..+|.+|+.+|+.++..++.+|.-||+.
T Consensus         9 eKI~sKIleDA~~~A~kI~~EAqkEk~~il~KAkeEAEk   47 (52)
T 2kk7_A            9 DKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999888689999989998899999998999998


No 5  
>3k5b_E V-type ATP synthase subunit E; right handed coiled coil, vacuolar ATPase/synthase, V-type ATPase/synthase, A-type ATPase/synthase; 3.10A {Thermus thermophilus HB8}
Probab=87.92  E-value=1.2  Score=22.09  Aligned_cols=28  Identities=18%  Similarity=0.240  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7889999999999999987768899999
Q gi|254780958|r  239 AEQDEDRFVEESNKYSNRVLGSARGEAS  266 (355)
Q Consensus       239 A~qe~er~i~eAe~~a~~i~~~A~geA~  266 (355)
                      |+++.+..+.+|+..+.+++.+|+.++.
T Consensus        12 a~~~~~~i~~eA~~~a~~i~~~a~~~~~   39 (188)
T 3k5b_E           12 VEAEIQALLQEAEAKAEAVKREAEEKAK   39 (188)
T ss_dssp             HHHHHHHHHHHTTSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999


No 6  
>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae}
Probab=87.00  E-value=1.3  Score=21.98  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76889999999977789999999972322999
Q gi|254780958|r  258 LGSARGEASHIRESSIAYKDRIIQEAQGEADR  289 (355)
Q Consensus       258 ~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r  289 (355)
                      +..|+.+|..|+.+|.-++.+.+-.|+.||+.
T Consensus        11 LL~AEk~A~eiV~eARk~k~~rLKqAK~EA~~   42 (60)
T 2k88_A           11 LLQAEKEAHEIVSKARKYRQDKLKQAKTDAAK   42 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988999999999999999888899999999


No 7  
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=83.31  E-value=2  Score=20.62  Aligned_cols=43  Identities=26%  Similarity=0.485  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88788999999999999998776889999999977789999999972322
Q gi|254780958|r  237 QRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGE  286 (355)
Q Consensus       237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~ge  286 (355)
                      ..|+.+....+.+|+..++.|+.+|+.+       |..++.++++.|+.+
T Consensus         5 ~eAk~eAa~Ii~qA~kra~qIveeAk~~-------A~~Ea~rIi~~A~~e   47 (61)
T 1l2p_A            5 KKAKAEAQVIIEQANKRRSQILDEAKAE-------AEQERTKIVAQAQAE   47 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_conf             9999999999999997799999999999-------999999999989999


No 8  
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A
Probab=67.70  E-value=0.75  Score=23.47  Aligned_cols=22  Identities=14%  Similarity=0.318  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999998776889
Q gi|254780958|r  241 QDEDRFVEESNKYSNRVLGSAR  262 (355)
Q Consensus       241 qe~er~i~eAe~~a~~i~~~A~  262 (355)
                      ++.+..+.+|++.+.+++.+|+
T Consensus        17 ~~a~~I~~eA~~~a~~i~~ea~   38 (198)
T 2dm9_A           17 RKIEYILNEARQQAEKIKEEAR   38 (198)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999


No 9  
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=50.28  E-value=2.4  Score=20.13  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999887889999999999999987768899999
Q gi|254780958|r  230 ADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEAS  266 (355)
Q Consensus       230 ~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~  266 (355)
                      .+|+.+|--|++..-+.|.||...+.+|.++|--||.
T Consensus        15 meaikevklaeeqavkeieeaknraeqikaeaieeak   51 (56)
T 2k6i_A           15 MEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAK   51 (56)
T ss_dssp             TTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998888999999999988189998899999998


No 10 
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12}
Probab=33.11  E-value=19  Score=14.17  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998776889999999977
Q gi|254780958|r  250 SNKYSNRVLGSARGEASHIRES  271 (355)
Q Consensus       250 Ae~~a~~i~~~A~geA~~i~~~  271 (355)
                      |+..+..++.+|+.+|..|+.+
T Consensus        28 A~~~~~~~l~eAK~~A~~iI~q   49 (53)
T 2khk_A           28 AKASATDQLKKAKAEAQVIIEQ   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999997


No 11 
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa}
Probab=29.73  E-value=21  Score=13.81  Aligned_cols=17  Identities=12%  Similarity=0.089  Sum_probs=10.4

Q ss_pred             HHCCCCCCCCCEECCCC
Q ss_conf             31135558983664575
Q gi|254780958|r   85 KPKNDVFLPGLHMMFWP  101 (355)
Q Consensus        85 k~~~~v~~pGlh~~~pp  101 (355)
                      +++.....|||-|.|.+
T Consensus        72 ~~q~~~s~PGL~~rP~~   88 (290)
T 3ixz_B           72 DYQDQLKSPGVTLRPDV   88 (290)
T ss_pred             CCCCCCCCCCEEEECCC
T ss_conf             86536889964643799


No 12 
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=23.86  E-value=27  Score=13.12  Aligned_cols=36  Identities=14%  Similarity=0.294  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHH
Q ss_conf             67887779999888631234617987534301562578
Q gi|254780958|r  191 RQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE  228 (355)
Q Consensus       191 R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~  228 (355)
                      -..+..+..+.-.+..+.|  -+.|.+|.++++.+|..
T Consensus        17 a~~VktQf~q~k~eAa~rY--nL~IS~vsV~dv~fPsS   52 (55)
T 2acm_B           17 VHDVETQFNQYKTEAASRY--NLTISDVSVSDVPFPFS   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CCCEEEEEEECC-----
T ss_pred             HHHHHHHHHHHHHHHHHCC--CEEEEEEEEEECCCCCC
T ss_conf             7888999998766454302--51652458875138876


No 13 
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=23.74  E-value=27  Score=13.10  Aligned_cols=19  Identities=32%  Similarity=0.411  Sum_probs=11.8

Q ss_pred             HHCCCCCCCCCEECCCCCC
Q ss_conf             3113555898366457532
Q gi|254780958|r   85 KPKNDVFLPGLHMMFWPID  103 (355)
Q Consensus        85 k~~~~v~~pGlh~~~ppi~  103 (355)
                      ++......|||-+.|-+-.
T Consensus        68 k~~~~~s~PGL~~rP~~~~   86 (305)
T 2zxe_B           68 KYQDRVAPPGLSHAPYAIK   86 (305)
T ss_dssp             SCCTTTCSCCBCCSSCCSS
T ss_pred             CCEECCCCCCEEECCCCCC
T ss_conf             7532257981254548997


No 14 
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=22.37  E-value=12  Score=15.43  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=12.3

Q ss_pred             HHHHHHHHH--HHH-HHHHHHHHHCHHHHHH
Q ss_conf             999723229--999-9999999869999999
Q gi|254780958|r  279 IIQEAQGEA--DRF-LSIYGQYVNAPTLLRK  306 (355)
Q Consensus       279 ~i~~A~gea--~rf-~~i~~~Y~~ap~vt~~  306 (355)
                      +++.+..+.  ..+ ..+.+-|..-|+-+..
T Consensus      1032 r~~~~~~~~~~~~~~~el~drfG~~p~~~~~ 1062 (1151)
T 2eyq_A         1032 RIASAKTENELEEIKVELIDRFGLLPDPART 1062 (1151)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             9972999999999999999875999889999


No 15 
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A*
Probab=22.10  E-value=26  Score=13.19  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCH
Q ss_conf             72322999999999998699
Q gi|254780958|r  282 EAQGEADRFLSIYGQYVNAP  301 (355)
Q Consensus       282 ~A~gea~rf~~i~~~Y~~ap  301 (355)
                      ..++.++|+..++.++.-.+
T Consensus       390 ~s~~~~~rL~~lL~~~~i~~  409 (483)
T 3hjh_A          390 ESEGRREALGELLARIKIAP  409 (483)
T ss_dssp             SCSSTTTTTHHHHGGGTCCC
T ss_pred             CCHHHHHHHHHHHHHCCCCC
T ss_conf             98789999999998769983


Done!