RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus
Liberibacter asiaticus str. psy62]
(355 letters)
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii}
Length = 113
Score = 70.4 bits (172), Expect = 5e-13
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQ 190
++ D +V + V Y V DP ++N+ + + +++++ +R ++G + S
Sbjct: 19 VICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETL-SG 77
Query: 191 RQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE 228
R I +R + K D + G+ I + I+ PP++
Sbjct: 78 RDIINARLREELDKITDRW--GVKITRVEIQRIDPPKD 113
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 66.4 bits (161), Expect = 9e-12
Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 7/181 (3%)
Query: 110 VIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQV 169
+ E+ + R+ + +T D V ++ V + V DP + ++N Q+
Sbjct: 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQI 61
Query: 170 SESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREV 229
S++ +R V+G+ ++ + + R + + T + GI + + I+D P +
Sbjct: 62 SQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPW---GIKVTAVEIKDVELPAGM 118
Query: 230 ADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDR---IIQEAQGE 286
A AE++ + + R A I E +A + R I + G+
Sbjct: 119 QKAMARQAEAERERRARITLAEAERQAAEK-LREAAEIISEHPMALQLRTLQTISDVAGD 177
Query: 287 A 287
Sbjct: 178 K 178
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 53.9 bits (129), Expect = 6e-08
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFN---------LENPGETLKQVSESAMREVVGRR 181
+ T + + + + + L +++ + Q E +R ++G
Sbjct: 24 VETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTL 83
Query: 182 FAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQ 241
V+ R Q A VR + + I I + +I+D + + + Q +
Sbjct: 84 -TVEQIYQDRDQFAKLVREVAAPDVGRMG--IEILSFTIKDVYDKVDYLSSLGKTQTSGP 140
Query: 242 D 242
Sbjct: 141 S 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.5 bits (105), Expect = 4e-05
Identities = 45/211 (21%), Positives = 72/211 (34%), Gaps = 80/211 (37%)
Query: 13 TRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFKSYGSVYIILLLIGSFC--AF--QS 68
+ L G+ G+ GL V A+ D ++ FF S +L IG C A+ S
Sbjct: 265 SYLKGATGHSQGL----VTAVAIAETDSWE--SFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 69 I--YIVHPDERAVELRFGKPKNDVFLP-----GLHMMFWPIDQVEIVKVIE-------RQ 114
+ I+ D ++E G P P L +QV+ +
Sbjct: 319 LPPSILE-D--SLENNEGVPS-----PMLSISNL-----TQEQVQ--DYVNKTNSHLPAG 363
Query: 115 QKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDP--RLYLFNLENPGETLKQVSES 172
+++ S L+ G +N VV+ P LY NL TL++
Sbjct: 364 KQV---EIS------LV-NGAKN---------LVVSGPPQSLYGLNL-----TLRKAKAP 399
Query: 173 AMREVVGRRFAVDIFR---SQRQQIALEVRN 200
+ +D R S+R L+ N
Sbjct: 400 S---------GLDQSRIPFSER---KLKFSN 418
Score = 41.1 bits (96), Expect = 4e-04
Identities = 57/342 (16%), Positives = 105/342 (30%), Gaps = 128/342 (37%)
Query: 45 PFFKSYGSV-YIILLLIGSFC-------AFQSIYIVHPDERA--------VEL--RF--- 83
P S+GS+ +++L+ SF F I + A EL +F
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 84 -------GKPKN--DV-----------FLPG--LHMM---FWPIDQVEIVK---VIE--- 112
K V +L G +H + + +VK +I+
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 113 RQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLY-LFNLENPGETLKQVSE 171
+ + R SNS L + +L +F G T E
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNA-------------QLVAIFG--GQGNTDDYFEE 172
Query: 172 SAMREV--VGRRFAVDIFRSQRQQIALEVRNLIQKTMD---YYKSGI-LINTISIEDASP 225
+R++ D+ + A + LI+ T+D + G+ ++ + +P
Sbjct: 173 --LRDLYQTYHVLVGDLIKF----SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 226 PRE-VADAFDEV--------QRAEQDEDRFVEESNKY--SNRVLGSARGE-ASHIRES-- 271
++ + + Q A Y + ++LG GE S+++ +
Sbjct: 227 DKDYLLSI--PISCPLIGVIQLAH------------YVVTAKLLGFTPGELRSYLKGATG 272
Query: 272 -SIAYKDRIIQEAQG--------EADRFLSIYGQYVNAPTLL 304
S QG E D + S + A T+L
Sbjct: 273 HS-----------QGLVTAVAIAETDSWESFFVSVRKAITVL 303
Score = 26.4 bits (58), Expect = 9.1
Identities = 29/202 (14%), Positives = 58/202 (28%), Gaps = 77/202 (38%)
Query: 12 PTRLSGSNGNGDGLP-PF----DV--EAIIRYIKDKFDL-IPFFKSYGSVYIILLLIGSF 63
P+ L S N +G+P P ++ E + Y+ +K + +P + V I L+
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLP---AGKQVEIS--LVNGA 374
Query: 64 CAF------QSIYIVHPDERAVELRFGKPKNDVFL-----------PGLHMMFWPI---- 102
QS+Y + L K K L F P+
Sbjct: 375 KNLVVSGPPQSLY-------GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 103 ------DQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYL 156
+++ + + + + + V
Sbjct: 428 HSHLLVPASDLIN-----KDLVK--------NNVSFNAKD----IQIPV----------- 459
Query: 157 FNLENPGETLKQVSESAMREVV 178
++ + G L+ +S S +V
Sbjct: 460 YDTFD-GSDLRVLSGSISERIV 480
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase; HET:
NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5
PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A*
Length = 472
Score = 31.6 bits (70), Expect = 0.31
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 9/135 (6%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVT---DPRLYLFNLENPGE 164
+ ++E IGGR + G + G++ + + + L L N + +
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFD 90
Query: 165 TLKQVSESAMREVVGRRFA------VDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTI 218
L Q V + D ++++ + + M L
Sbjct: 91 YLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQ 150
Query: 219 SIEDASPPREVADAF 233
A+P V D +
Sbjct: 151 PNGPATPVDMVVDYY 165
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A*
Length = 662
Score = 30.8 bits (68), Expect = 0.50
Identities = 31/207 (14%), Positives = 78/207 (37%), Gaps = 8/207 (3%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDP---RLYLFNLENP-G 163
V ++E + ++GGR A+ + + G + GL + + VV+ L + P
Sbjct: 133 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLY 192
Query: 164 ETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDA 223
E Q E+V + F + + L+ L K + ++ L I +++
Sbjct: 193 EANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LEVVIQLQEK 250
Query: 224 SPPREVADAFDEVQRAEQDEDRFVEE--SNKYSNRVLGSARGEASHIRESSIAYKDRIIQ 281
E + + ++ + +++ + + + K + L EAS ++ + +++
Sbjct: 251 HVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVK 310
Query: 282 EAQGEADRFLSIYGQYVNAPTLLRKRI 308
+ Y + L +++
Sbjct: 311 SKHRDLTALCKEYDELAETQGKLEEKL 337
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 29.5 bits (65), Expect = 1.3
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 244 DRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSI--YGQYVNAP 301
D F ++ Y VL +A R + A + G + + +G+ A
Sbjct: 587 DAFDKQDAAYRESVLP----KAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAE 642
Query: 302 TLLRKRIYLETMEGILKKAKKVI 324
L + + T++ ++ KAK+++
Sbjct: 643 LLFEE--FGFTVDNVVAKAKELL 663
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 29.1 bits (63), Expect = 1.6
Identities = 17/148 (11%), Positives = 37/148 (25%), Gaps = 9/148 (6%)
Query: 108 VKVIERQQKIGGRSASV---------GSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFN 158
V V+E + + GGR + + + + + + + Y
Sbjct: 37 VTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSHITLDYCRE 96
Query: 159 LENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTI 218
L + + + + R A + + G L +
Sbjct: 97 LGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTFGYMSELLKKATDQGALDQVL 156
Query: 219 SIEDASPPREVADAFDEVQRAEQDEDRF 246
S ED E F ++ +
Sbjct: 157 SREDKDALSEFLSDFGDLSDDGRYLGSS 184
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 29.2 bits (65), Expect = 1.7
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 46 FFKSYGSVYIIL--LLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPID 103
F+ Y L I F F + +++P E A L K F+PG P
Sbjct: 303 MFQPGAIFYNFLYVTFIVFFTYFYTAVLINPVELAENLH----KAGAFIPG----VRPGQ 354
Query: 104 QVE--IVKVIERQQKIGG 119
+ ++I R G
Sbjct: 355 DTVKYLERIINRLIFFGA 372
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 28.7 bits (63), Expect = 2.1
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 244 DRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTL 303
F ++ +Y VL S + + + ++ G DRF G AP +
Sbjct: 592 FTFDKQPLEYRLSVLPDNVPIMS-VEVLATTCWGKYAHQSFG-IDRF----GASGKAPEV 645
Query: 304 LRKRIYLETMEGILKKAKKVIIDKKQSVMPYLPLNEAF 341
+ + T EG+ ++A+K I K + PL +AF
Sbjct: 646 FKF--FGFTPEGVAERAQKTIAFYKGDKLIS-PLKKAF 680
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae}
Length = 336
Score = 28.1 bits (60), Expect = 2.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNI 138
V + ++ + GGR +S S++G + G Q
Sbjct: 28 VHLFDKSRGSGGRMSSKRSDAGALDMGAQYF 58
>2akh_Y Preprotein translocase SECY subunit; protein transport,
translocation, transmembrane, transport; 14.90A
{Escherichia coli} PDB: 2aki_Y
Length = 400
Score = 28.0 bits (62), Expect = 3.1
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 46 FFKSYGSVYIIL--LLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPID 103
+ + +Y++L I FC F + + +P E A L+ K+ F+PG+
Sbjct: 273 YLQPGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLK----KSGAFVPGIRPG--EQT 326
Query: 104 QVEIVKVIERQQKIGG 119
I KV+ R +G
Sbjct: 327 AKYIDKVMTRLTLVGA 342
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 27.8 bits (61), Expect = 3.5
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 244 DRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSI--YGQYVNAP 301
DRF ++ +Y VL A + I + R + G L I +G
Sbjct: 614 DRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYV----GLEGDVLGIDTFGASAPGE 669
Query: 302 TLLRK-RIYLETMEGILKKAKKVI 324
++ + T+E +++K K+++
Sbjct: 670 KIMEEYGF---TVENVVRKVKEML 690
>3jq0_A SUSD superfamily protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; HET: MSE GOL SO4; 1.13A {Bacteroides vulgatus
atcc 8482}
Length = 493
Score = 27.8 bits (60), Expect = 3.6
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 12/45 (26%)
Query: 75 DERAVEL-----------RFGKPKNDVFLPGL-HMMFWPIDQVEI 107
ER E G + + WPID +
Sbjct: 436 KERLREFMFEGKRWYDIRLLGWDYVHQYSSAEQSRLLWPIDAGTL 480
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 27.9 bits (60), Expect = 3.7
Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 13/139 (9%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLIL-TGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETL 166
V+E + ++GGR +V G G + L++ +L L N G T
Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEA-QLSL----NDGRTR 89
Query: 167 KQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPP 226
+ + R VD + + ++ M + + + D S
Sbjct: 90 FVFDDDNFIYIDEERGRVDHDKE-------LLLEIVDNEMSKFAELEFHQHLGVSDCSFF 142
Query: 227 REVADAFDEVQRAEQDEDR 245
+ V + ++ ++
Sbjct: 143 QLVMKYLLQRRQFLTNDQI 161
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 27.8 bits (60), Expect = 3.7
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLF 157
++E + +IGGRS S + G + V +T +++
Sbjct: 65 TLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNA 114
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia
coli} SCOP: f.23.21.1
Length = 61
Score = 27.6 bits (62), Expect = 4.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 258 LGSARGEASHIRESSIAYKDRIIQEAQGEADR 289
L A+ EA I E + + +I+ EA+ EA++
Sbjct: 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQ 35
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 27.2 bits (59), Expect = 5.4
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLY 147
V ++E + ++GGR A+ + + G + GL + +
Sbjct: 304 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMA 343
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Length = 481
Score = 27.3 bits (59), Expect = 5.6
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 19/52 (36%)
Query: 75 DERAVEL-----------RFGKPKNDVFLPGL--------HMMFWPIDQVEI 107
ER EL R GK N + WPI + +
Sbjct: 417 WERCRELIGEGHYYYDLVRTGKVYNRNYCMNPMTRTNFNVGAWTWPIHRNAL 468
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal
BIN protein, structural genomics; HET: MSE; 1.25A
{Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Length = 361
Score = 27.4 bits (60), Expect = 5.6
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 81 LRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVG 140
FG P +M WP+DQ IV+++ + + + QN+ G
Sbjct: 288 FLFGPVDEMGLDP--NMDSWPLDQNAIVQIL--NSQSWSDLEWSEGDDEAAVESAQNVRG 343
Query: 141 LH---FSVLYVVTDPR 153
H F +LY +PR
Sbjct: 344 FHTLEF-LLYKNGEPR 358
>3kdq_A Uncharacterized conserved protein; functionally unknown
protein,corynebacterium diphtheriae, structural
genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Length = 154
Score = 27.0 bits (60), Expect = 5.8
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 8/103 (7%)
Query: 195 ALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNK-- 252
AL R Q+ +L E P + E++ + V N+
Sbjct: 9 ALAQRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTN 68
Query: 253 -----YSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRF 290
L A + + Y D + + DR+
Sbjct: 69 SVTEFSEGMTLADALSVRDALLKKRTLYSD-LADQLTSRQDRY 110
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 26.9 bits (59), Expect = 7.4
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHF 143
+ V+E+ IGGR ++ + TG +++
Sbjct: 26 IIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGE 61
>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing,
ladlidadg, catalytic mechanism, metal binding; HET: DNA;
2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A*
Length = 235
Score = 26.8 bits (59), Expect = 8.9
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 29 DVEAIIRYIKDKFDLIPFFKSYGSVYIILLLIGSFCAFQSI---YIVHPD 75
+VE +++ +++KF L + K + II + S+ F ++ Y+ P
Sbjct: 171 EVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYL-IPQ 219
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins,
structural genomics, J center for structural genomics,
JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Length = 454
Score = 26.7 bits (58), Expect = 9.6
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 22/57 (38%)
Query: 75 DERAVEL-----------RFGKP---KNDVFLPGL--------HMMFWPIDQVEIVK 109
DER+ EL R GK K LP + + PI + + +
Sbjct: 385 DERSKELVGEGHRFFDLLRNGKTIVRKGGYHLPSVDEEVDWDFYKCVLPIPEDQFIF 441
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.4 bits (57), Expect = 9.9
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 34/95 (35%)
Query: 273 IAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRK-----RIYLETMEGILK--------K 319
IA DR+ QE P +RK R L+ ++ K K
Sbjct: 74 IAQADRLTQE------------------PESIRKWREEQRKRLQELDAASKVMEQEWREK 115
Query: 320 AKKVIIDKKQSVMPYLPLNEAFSRIQTKREIRWYQ 354
AKK + + Q + N+ +RI K +YQ
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIADK---AFYQ 147
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.138 0.394
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,094,383
Number of extensions: 146604
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 36
Length of query: 355
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 262
Effective length of database: 3,438,538
Effective search space: 900896956
Effective search space used: 900896956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)