RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus
Liberibacter asiaticus str. psy62]
(355 letters)
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 143
Score = 51.2 bits (122), Expect = 1e-07
Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 12/121 (9%)
Query: 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFN---------LENPGETLKQVSESAMREVVGRR 181
+ T + + + + + L +++ + Q E +R ++G
Sbjct: 24 VETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTL 83
Query: 182 FAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQ 241
I++ R Q A VR + + GI I + +I+D + + + Q +
Sbjct: 84 TVEQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGKTQTSGP 140
Query: 242 D 242
Sbjct: 141 S 141
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 33.4 bits (74), Expect = 0.029
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLEN 161
+ ++E IGGR + G + G++ + + L N
Sbjct: 27 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRN 80
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 449
Score = 29.5 bits (64), Expect = 0.39
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLY 147
V ++E + ++GGR A+ + + G + GL + +
Sbjct: 31 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMA 70
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 28.9 bits (63), Expect = 0.63
Identities = 6/49 (12%), Positives = 16/49 (32%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYL 156
++E ++GG + L+ G + + + + L
Sbjct: 26 AVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEG 74
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 105
Score = 28.2 bits (63), Expect = 1.1
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 29 DVEAIIRYIKDKFDLIPFFKSYGSVYIILLLIGSFCAFQSI---YIV 72
+VE +++ +++KF L + K + II + S+ F ++ Y++
Sbjct: 51 EVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYLI 97
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 27.9 bits (60), Expect = 1.5
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVL 146
V V E + K GG+ SV + + G + V
Sbjct: 27 VTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVT 65
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
maritima [TaxId: 2336]}
Length = 329
Score = 27.3 bits (59), Expect = 2.2
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 226 PREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHI 268
E+ F+ + + F E ++ VL G + ++
Sbjct: 11 KNELKKFFENFVLNLEKTEIFSEIQKNLTDEVLFVGCGSSYNL 53
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
{Escherichia coli [TaxId: 562]}
Length = 61
Score = 26.9 bits (60), Expect = 2.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 258 LGSARGEASHIRESSIAYKDRIIQEAQGEAD 288
L A+ EA I E + + +I+ EA+ EA+
Sbjct: 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAE 34
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 26.7 bits (57), Expect = 3.0
Identities = 11/71 (15%), Positives = 22/71 (30%)
Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLK 167
V ++R GG S+S+ L + L L G+ +K
Sbjct: 32 VLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVK 91
Query: 168 QVSESAMREVV 178
+ + + +
Sbjct: 92 MLLYTEVTRYL 102
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii
18 [TaxId: 306]}
Length = 242
Score = 26.4 bits (57), Expect = 3.5
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 1 MSYDKNNSDWRPTRLSGSNGNGDGLPPFDVEAI 33
MSY + + +G D+ A+
Sbjct: 205 MSYWSEKNTGQVFTKTGEGAYASAPLLDDIAAV 237
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 26.2 bits (56), Expect = 4.2
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 108 VKVIERQQKIGGRSASVGSNSG 129
V V+E + ++GGR+ ++ +
Sbjct: 25 VVVLEARDRVGGRTYTLRNQKV 46
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 75
Score = 25.4 bits (56), Expect = 8.2
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 171 ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQ 203
E A+ E + +DIF+S Q ++ ++
Sbjct: 46 ERALEEA---KVHIDIFKSVEAQ-VKDIVKALK 74
>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein
AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId:
358]}
Length = 87
Score = 25.1 bits (54), Expect = 9.9
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 28 FDVEAIIRYIKDKFDL 43
+ AI Y+ ++ D+
Sbjct: 72 SQMPAIAIYLGERLDI 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.394
Gapped
Lambda K H
0.267 0.0397 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,335,040
Number of extensions: 63582
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 17
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.1 bits)