BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62] (355 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/355 (100%), Positives = 355/355 (100%) Query: 1 MSYDKNNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFKSYGSVYIILLLI 60 MSYDKNNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFKSYGSVYIILLLI Sbjct: 1 MSYDKNNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFKSYGSVYIILLLI 60 Query: 61 GSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGR 120 GSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGR Sbjct: 61 GSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGR 120 Query: 121 SASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGR 180 SASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGR Sbjct: 121 SASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGR 180 Query: 181 RFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAE 240 RFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAE Sbjct: 181 RFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAE 240 Query: 241 QDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNA 300 QDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNA Sbjct: 241 QDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNA 300 Query: 301 PTLLRKRIYLETMEGILKKAKKVIIDKKQSVMPYLPLNEAFSRIQTKREIRWYQS 355 PTLLRKRIYLETMEGILKKAKKVIIDKKQSVMPYLPLNEAFSRIQTKREIRWYQS Sbjct: 301 PTLLRKRIYLETMEGILKKAKKVIIDKKQSVMPYLPLNEAFSRIQTKREIRWYQS 355 >gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 302 Score = 34.3 bits (77), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 17/229 (7%) Query: 68 SIYIVHPDERAVELRFGKPKNDVFLPGLHM-MFWPIDQVEIVKVIERQQKIGGRSASVGS 126 S +IV ++A+ RFGK PG++ M + V+ VK +++Q + Sbjct: 23 SFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQ------IMRLNL 76 Query: 127 NSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLEN----PGETLKQVSESAMREVVGRRF 182 ++ + D + + Y + DP L+ ++ L+ ++++R V G R Sbjct: 77 DNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRR 136 Query: 183 AVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVA-DAFDEVQRAEQ 241 D QR+++ +EV ++ D K GI I + + +EV+ +D ++ Sbjct: 137 FDDALSKQREKMMMEVCEDLR--YDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERL 194 Query: 242 DEDRFVEESNKYS-NRVLGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 E F+ + + + A +A+ I S A +D I +GEA+R Sbjct: 195 AEAEFIRARGREEGQKRMSIADRKATQI--LSEARRDSEINYGKGEAER 241 >gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 28.5 bits (62), Expect = 0.17, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 18/23 (78%) Query: 100 WPIDQVEIVKVIERQQKIGGRSA 122 WP ++ ++K+I+R++KIG R A Sbjct: 191 WPDLRIGLLKIIDREKKIGSREA 213 >gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 737 Score = 23.5 bits (49), Expect = 5.7, Method: Compositional matrix adjust. Identities = 7/16 (43%), Positives = 13/16 (81%) Query: 140 GLHFSVLYVVTDPRLY 155 GLHFS++ + T+ +L+ Sbjct: 335 GLHFSIIGITTNDKLF 350 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.394 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,028 Number of Sequences: 1233 Number of extensions: 9040 Number of successful extensions: 24 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 6 length of query: 355 length of database: 328,796 effective HSP length: 75 effective length of query: 280 effective length of database: 236,321 effective search space: 66169880 effective search space used: 66169880 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)