HHsearch alignment for GI: 254780959 and conserved domain: COG4260

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism].
Probab=98.46  E-value=4.2e-06  Score=65.78  Aligned_cols=168  Identities=16%  Similarity=0.233  Sum_probs=118.9

Q ss_pred             HHEEEECCCCEEEEEECCEEEEEECCCCEE----EEECC-----------CCCCEEEEEEEEEEECC-CC-CCCCHHCCC
Q ss_conf             300795787579999758576552289718----98076-----------32200379998752013-44-331000011
Q gi|254780959|r   22 SSFFIVDARQQAIVTRFGKIHATYREPGIY----FKMPF-----------SFMNVDRVKYLQKQIMR-LN-LDNIRVQVS   84 (302)
Q Consensus        22 ~~~~~V~~~e~~Vv~rfGk~~~~~~~pGlh----fk~P~-----------~~~~i~~v~~~~~r~~~-~~-~~~~~v~T~   84 (302)
T Consensus        39 Gs~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin~~  118 (345)
T COG4260          39 GSILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPINYF  118 (345)
T ss_pred             CCEEEEECCCEEEEECCCEEEEEECCCCEEEEEECCCCHHHHHHCCEECCCCCCCCEEEEEECCEECCEECCCCCCEECC
T ss_conf             86799845834899719888765437861686524562532211230057886530599986120203633798770325


Q ss_pred             C---C--CCCCCCCCCCEEEECCCHHHHHCCCCHH-----HHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHH
Q ss_conf             2---2--2101243321012011012220133133-----466434677787653101124200-000121001589999
Q gi|254780959|r   85 D---G--KFYEVDAMMTYRIIDPSLFCQSVSCDRI-----AAESRLRTRLDASIRRVYGLRRFD-DALSKQREKMMMEVC  153 (302)
Q Consensus        85 D---~--~~v~vd~~v~yrI~dp~~~~~~~~~~~~-----~~~~~l~~~~~~~lr~v~~~~~~~-e~l~~~R~~i~~~v~  153 (302)
T Consensus       119 dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~  198 (345)
T COG4260         119 DNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMA  198 (345)
T ss_pred             CCCCCCEEEEEECCEEEEEECCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH
T ss_conf             56666502776152478984278999986568875577899889899999999999987619443111000778999999


Q ss_pred             HHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHH
Q ss_conf             999887422144310000001111012445543112
Q gi|254780959|r  154 EDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRM  189 (302)
Q Consensus       154 ~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~~  189 (302)
T Consensus       199 e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~  234 (345)
T COG4260         199 EVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN  234 (345)
T ss_pred             HHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHC
T ss_conf             987389986171676678987538689999987650