HHsearch alignment for GI: 254780959 and conserved domain: TIGR01932
>TIGR01932 hflC HflC protein; InterPro: IPR010200 HflK and HflC are paralogs encoded by tandem genes in proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. ; GO: 0005515 protein binding, 0008233 peptidase activity, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=436.70 Aligned_cols=278 Identities=32% Similarity=0.556 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHHHHEEEECCCCEEEEEECCEEEEEE------CCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCHH
Q ss_conf 99999999999998300795787579999758576552------289718980763220037999875201344331000
Q gi|254780959|r 8 SFFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATY------REPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRV 81 (302)
Q Consensus 8 ~~~v~i~~~~~~~~~~~~~V~~~e~~Vv~rfGk~~~~~------~~pGlhfk~P~~~~~i~~v~~~~~r~~~~~~~~~~v 81 (302)
T Consensus 5 ~i~~iv~~~~~~l~~~~f~ikEGe~gI~~RFGki~~d~N~~~lvY~pGLh~K~Pf----ie~Vk~~~a~Iqt~Dg~~dr~ 80 (345)
T TIGR01932 5 VIVVIVLLTIVVLFQPFFIIKEGERGIILRFGKILKDDNDKVLVYEPGLHFKIPF----IESVKIFDAKIQTMDGRPDRI 80 (345)
T ss_pred EEHHHHHHHHHHHHCCEEEEECCCEEEEEECCEEEEECCCCCEEECCCCCEECCC----CCCCCCCCCEEEEECCCCCCC
T ss_conf 3228899999998612016314847676541606873488532546876243573----044210330002006783612
Q ss_pred CC--CCCCCCCCCCCCCEEEECCCHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH-----------H
Q ss_conf 01--122210124332101201101222013-313346643467778765310112420000012100-----------1
Q gi|254780959|r 82 QV--SDGKFYEVDAMMTYRIIDPSLFCQSVS-CDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQRE-----------K 147 (302)
Q Consensus 82 ~T--~D~~~v~vd~~v~yrI~dp~~~~~~~~-~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~-----------~ 147 (302)
T Consensus 81 ~TGGkEKk~~~~DTy~~WrI~D~~~yYl~~Ggg~~~~Ae~li~~~~~~~lR~~I~~~~~~~Iv~~~~~~~vlPE~~~S~~ 160 (345)
T TIGR01932 81 VTGGKEKKDIIVDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIEDRLRSEIGKLELKEIVRSSRDINVLPESNDSEQ 160 (345)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCC
T ss_conf 25776442278826542015655576210588658999999987307444215330686002207654031357777750
Q ss_pred H-HHHHHHHH----------------------------------------HHHHHHCCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 5-89999999----------------------------------------887422144310000001111012445543
Q gi|254780959|r 148 M-MMEVCEDL----------------------------------------RYDAEKLGISIEDVRVLRTDLTQEVSQQTY 186 (302)
Q Consensus 148 i-~~~v~~~l----------------------------------------~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~ 186 (302)
T Consensus 161 l~~~~~~~a~~~~~~~~tedevt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~Gi~vVDV~ikkI~~~~e~~esi~ 240 (345)
T TIGR01932 161 LDTLSIKLALNAEGKINTEDEVTYKAVIFKIAIKIEKGREILEKEILQIANNQLKDLGIEVVDVRIKKINLSDELSESIY 240 (345)
T ss_pred CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEEEEEECCCCCHHHHHHHH
T ss_conf 10467875214555667510100278999998743321467876543037000532891899998503137888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 11289999988776788999976557788999997689899998886338789999999999875799999999999999
Q gi|254780959|r 187 DRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYT 266 (302)
Q Consensus 187 ~~~~ae~~~~A~~~~a~~~~ea~~~~a~ae~~~~~i~AeA~~~a~~~~A~aeA~a~~~~~~a~~~~p~~~~~~~~l~~~~ 266 (302)
T Consensus 241 nRm~~ER~~iA~~~RS~G~~~aee~~~~~~~Ev~~iLseA~~~A~~ikgEgDA~AAK~ysdAy~K~PEFy~F~rSL~aYe 320 (345)
T TIGR01932 241 NRMRSEREQIARKHRSQGEEKAEELRGKADYEVLKILSEAKRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFIRSLEAYE 320 (345)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98999999999984436668899998525277887889988735343125769999999987478953889999999999
Q ss_pred HHHCCCCC-EEEEC-CCCHHHHHCC
Q ss_conf 98346993-99988-9971655122
Q gi|254780959|r 267 DSLASSDT-FLVLS-PDSDFFKYFD 289 (302)
Q Consensus 267 ~~~~~~~~-~~i~~-~~s~~~~~l~ 289 (302)
T Consensus 321 ~~f~~k~~d~~v~se~d~~FF~Ym~ 345 (345)
T TIGR01932 321 KSFKDKNQDLKVLSETDSDFFRYMY 345 (345)
T ss_pred HHCCCCCCCEEEECCCCHHHHHCCC
T ss_conf 8626677606886088715652059