HHsearch alignment for GI: 254780959 and conserved domain: TIGR01933
>TIGR01933 hflK HflK protein; InterPro: IPR010201 The accumulation of abnormal membrane proteins is something which must be avoided in order to maintain cell viability. In Escherichia coli, the membrane-bound, ATP-dependent protease FtsH plays a central role in the degradation of these abnormal proteins . Known substrates of this protease include several lambda bacteriophage proteins, the heat-shock transcription factor sigma-32, and the unassembled form of the membrane protein SecY. While FtsH is active as a protease on its own, in vivo it forms a complex with a membrane-bound HflKC heterodimer. HflKC has a generally inhibitory effect on the protease activity of FtsH, though the mechanism of this inhibition is not known. The HflK and HflC polypeptides are paralogous, and often encoded by tandem genes within bacterial genomes. This entry represents the HflK subunit of the HflKC heterodimer.; GO: 0005515 protein binding, 0016021 integral to membrane.
Probab=100.00 E-value=5.8e-43 Score=346.20 Aligned_cols=261 Identities=21% Similarity=0.318 Sum_probs=222.0
Q ss_pred EEEECCCCEEEEEECCEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCC----------------CCCCHHCCCCCC
Q ss_conf 0795787579999758576552289718980763220037999875201344----------------331000011222
Q gi|254780959|r 24 FFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLN----------------LDNIRVQVSDGK 87 (302)
Q Consensus 24 ~~~V~~~e~~Vv~rfGk~~~~~~~pGlhfk~P~~~~~i~~v~~~~~r~~~~~----------------~~~~~v~T~D~~ 87 (302)
T Consensus 1 ~y~i~e~e~gVVlRfGk~~~~v-~PGL~~~~~fpi~~v~~VnV~~v~~~~FGF~~S~S~~~~~yv~~~~~~g~mLT~DeN 79 (285)
T TIGR01933 1 IYIIGEAERGVVLRFGKYHRTV-EPGLNWKPPFPIEEVYKVNVTAVRKIKFGFLISKSDIRENYVDELRKQGLMLTGDEN 79 (285)
T ss_pred CEECCCCCCCEEECCCCHHHHH-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCC
T ss_conf 9542633360451033102222-477653366873651006468865543152236425567898877406731104466
Q ss_pred CCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 1012433210120110122201331334664346777876531011242000001210015899999998874221--44
Q gi|254780959|r 88 FYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKL--GI 165 (302)
Q Consensus 88 ~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~i~~~v~~~l~~~~~~~--GI 165 (302)
T Consensus 80 iV~V~~~VQY~I~DP~~ylf~V~~~~r--r~sl~~at~Salr~~iG~~~~~~iLt~gR~~i~~~~~~~l~~~i~~Y~~Gi 157 (285)
T TIGR01933 80 IVNVELNVQYRITDPAKYLFSVENPER--RDSLRQATDSALREVIGDSSMDSILTEGRSQIREDTKERLNEIIDNYDLGI 157 (285)
T ss_pred EEEEEEEEEEEEECHHHHCCCCCCCHH--HHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 788765666665363775136768425--569999999998654062026787366716788999999999874203863
Q ss_pred CCCCCEEHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31000000111101-24455431128999998877678899997655--7788999997689899998886338789999
Q gi|254780959|r 166 SIEDVRVLRTDLTQ-EVSQQTYDRMKAERLAEAEFIRARGREEGQKR--MSIADRKATQILSEARRDSEINYGKGEAERG 242 (302)
Q Consensus 166 ~I~~V~I~~i~~p~-~i~~ai~~~~~ae~~~~A~~~~a~~~~ea~~~--~a~ae~~~~~i~AeA~~~a~~~~A~aeA~a~ 242 (302)
T Consensus 158 ~v~~V~~q~A~PP~GeVk~AFdDvi~A~ed~~r--~I~EA~~y~n~~~P~A~G~A~r~~~eA~gY~~~~i~~A~G~v~rF 235 (285)
T TIGR01933 158 TVVDVNLQSARPPEGEVKEAFDDVIAAREDEER--YINEAEAYANEVVPKARGRAQRIIEEARGYKEERINRAKGDVARF 235 (285)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 798654166688720016789999987788999--999999876036874227657789999767899898763219999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC-HHHHHCC
Q ss_conf 9999998757999999999999999834699399988997-1655122
Q gi|254780959|r 243 RILSNVFQKDPEFFEFYRSMRAYTDSLASSDTFLVLSPDS-DFFKYFD 289 (302)
Q Consensus 243 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~s-~~~~~l~ 289 (302)
T Consensus 236 ~~ll~eY~~AP~vTr~RLYlEtm~~vl~n~~kV~~~~~~~~~~L~~lp 283 (285)
T TIGR01933 236 TKLLAEYKKAPDVTRERLYLETMEKVLSNTSKVLLDDKKGKNNLLYLP 283 (285)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEC
T ss_conf 998899862536678654799999997048845876577776532002