HHsearch alignment for GI: 254780959 and conserved domain: cd02106
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.47 E-value=5.8e-14 Score=125.53 Aligned_cols=119 Identities=30% Similarity=0.412 Sum_probs=107.1
Q ss_pred EEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 75201344331000011222101243321012011012220133133466434677787653101124200000121001
Q gi|254780959|r 68 QKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREK 147 (302)
Q Consensus 68 ~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~ 147 (302)
T Consensus 3 ~~~~~~~~~~~~~~~T~d~~~i~v~~~v~~rI~d~~~~~~~~~~~~~--~~~i~~~~~~~lr~~i~~~~~~~~~-~~r~~ 79 (121)
T cd02106 3 DLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPED--EEALRQLAQSALRSVIGKMTLDELL-EDRDE 79 (121)
T ss_pred CCEEEEECCCCCEEECCCCCEEEEEEEEEEEEEEHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHCCHHHHH-HHHHH
T ss_conf 45477024898675858998999999999999367986454179209--9999999999999997115377652-01666
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHH
Q ss_conf 589999999887422144310000001111012445543112
Q gi|254780959|r 148 MMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRM 189 (302)
Q Consensus 148 i~~~v~~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~~ 189 (302)
T Consensus 80 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~ 121 (121)
T cd02106 80 IAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDRQ 121 (121)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHC
T ss_conf 899999999887875195899999986389999999997009