HHsearch alignment for GI: 254780959 and conserved domain: cd03402
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=1.5e-30 Score=251.68 Aligned_cols=172 Identities=18% Similarity=0.356 Sum_probs=155.5
Q ss_pred HEEEECCCCEEEEEECCEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEECC
Q ss_conf 00795787579999758576552289718980763220037999875201344331000011222101243321012011
Q gi|254780959|r 23 SFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDP 102 (302)
Q Consensus 23 ~~~~V~~~e~~Vv~rfGk~~~~~~~pGlhfk~P~~~~~i~~v~~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~dp 102 (302)
T Consensus 1 G~~iV~p~ea~Vv~~FGky~gti~~pGL~~~~Pf----~~~~-~vd~R~~~~d~~~q~v~t~D~~~i~IdavV~wrV~Dp 75 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPF----SSKK-RVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDT 75 (219)
T ss_pred CCEEECCCHHHHHHHCCCCCCCCCCCCEEEEEEE----EEEE-EEEEEEEEECCCCEEEECCCCCEEEEEEEEEEEECCH
T ss_conf 9389782655688733770575468982899626----8789-9730589751686575848999899989999998488
Q ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHH
Q ss_conf 012220133133466434677787653101124200000------12100158999999988742214431000000111
Q gi|254780959|r 103 SLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDAL------SKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTD 176 (302)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l------~~~R~~i~~~v~~~l~~~~~~~GI~I~~V~I~~i~ 176 (302)
T Consensus 76 ~kA~~~V~n~----~~~v~~~aetaLR~v~g~~~~D~~~~~~~~L~~~rd~I~~~l~~~l~e~~~~~GI~V~~vrIk~i~ 151 (219)
T cd03402 76 AKAVFNVDDY----EEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLA 151 (219)
T ss_pred HHHHHHCCCH----HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 9998742659----999999999999998623674101013455514899999999999877766309799999972535
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101244554311289999988776788
Q gi|254780959|r 177 LTQEVSQQTYDRMKAERLAEAEFIRAR 203 (302)
Q Consensus 177 ~p~~i~~ai~~~~~ae~~~~A~~~~a~ 203 (302)
T Consensus 152 ~p~eIa~AM~~r~qAea~~~aR~~ive 178 (219)
T cd03402 152 YAPEIAQAMLQRQQASAIIAARRKIVE 178 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989999999999999999999999987