HHsearch alignment for GI: 254780959 and conserved domain: pfam12127

>pfam12127 YdfA_immunity SigmaW regulon antibacterial. This protein is found in bacteria. Proteins in this family are about 330 amino acids in length. The operon from which this protein is derived confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=95.79  E-value=0.075  Score=33.39  Aligned_cols=160  Identities=15%  Similarity=0.243  Sum_probs=83.6

Q ss_pred             CCCCCCHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             44331000011222101243321012011012220133133466434677787653101124200000121001589999
Q gi|254780959|r   74 LNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVC  153 (302)
Q Consensus        74 ~~~~~~~v~T~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~i~~~v~  153 (302)
T Consensus       131 Id~P~i~aVAkdGIql~~~ARVTVR-aNi~~LVG---G--A~EeTIiARVGEgIVs~IGSa~~hk~VL-EnPd~ISk~VL  203 (321)
T pfam12127       131 IDTPTIDAVAKDGIQLKVKARVTVR-ANIERLVG---G--AGEETIIARVGEGIVTTIGSADTHKEVL-ENPDSISKTVL  203 (321)
T ss_pred             ECCCCHHHHHCCCEEEEEEEEEEEE-CCHHHHHC---C--CCHHHHHHHHCCCEEEEECCCCHHHHHH-CCHHHHHHHHH
T ss_conf             5586426664067489999999863-05787727---7--7502344343474240132623287997-29878799998


Q ss_pred             HHHHHHHHH-CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf             999887422-14431000000111101244554311289999988776788999976557788999997689899-9988
Q gi|254780959|r  154 EDLRYDAEK-LGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEAR-RDSE  231 (302)
Q Consensus       154 ~~l~~~~~~-~GI~I~~V~I~~i~~p~~i~~ai~~~~~ae~~~~A~~~~a~~~~ea~~~~a~ae~~~~~i~AeA~-~~a~  231 (302)
T Consensus       204 ~---kgLDagTAFeIlSIDIADvdVG~NIGA~----Lq~d-QAeADk~vAqAkAE~RRA~--AvA~EQEm~A~vqemrAk  273 (321)
T pfam12127       204 E---KGLDAGTAFEILSIDIADIDVGENIGAR----LQTD-QAEADKRIAQAKAEERRAM--AVAREQEMKAKVQEMRAK  273 (321)
T ss_pred             H---CCCCCCCEEEEEEEEEECCCHHHHHCHH----HHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf             5---3678685169998754234122222545----5177-8878789998778889999--999989999999997767


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             863387899999999998757
Q gi|254780959|r  232 INYGKGEAERGRILSNVFQKD  252 (302)
Q Consensus       232 ~~~A~aeA~a~~~~~~a~~~~  252 (302)
T Consensus       274 vV--eAEaeVP~Ama~A~r~G  292 (321)
T pfam12127       274 VV--EAEAEVPKAMAEAFREG  292 (321)
T ss_pred             HH--HHHHHCHHHHHHHHHCC
T ss_conf             31--23201529999999719