HHsearch alignment for GI: 254780959 and conserved domain: pfam12127
>pfam12127 YdfA_immunity SigmaW regulon antibacterial. This protein is found in bacteria. Proteins in this family are about 330 amino acids in length. The operon from which this protein is derived confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=95.79 E-value=0.075 Score=33.39 Aligned_cols=160 Identities=15% Similarity=0.243 Sum_probs=83.6
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 44331000011222101243321012011012220133133466434677787653101124200000121001589999
Q gi|254780959|r 74 LNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVC 153 (302)
Q Consensus 74 ~~~~~~~v~T~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~i~~~v~ 153 (302)
T Consensus 131 Id~P~i~aVAkdGIql~~~ARVTVR-aNi~~LVG---G--A~EeTIiARVGEgIVs~IGSa~~hk~VL-EnPd~ISk~VL 203 (321)
T pfam12127 131 IDTPTIDAVAKDGIQLKVKARVTVR-ANIERLVG---G--AGEETIIARVGEGIVTTIGSADTHKEVL-ENPDSISKTVL 203 (321)
T ss_pred ECCCCHHHHHCCCEEEEEEEEEEEE-CCHHHHHC---C--CCHHHHHHHHCCCEEEEECCCCHHHHHH-CCHHHHHHHHH
T ss_conf 5586426664067489999999863-05787727---7--7502344343474240132623287997-29878799998
Q ss_pred HHHHHHHHH-CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 999887422-14431000000111101244554311289999988776788999976557788999997689899-9988
Q gi|254780959|r 154 EDLRYDAEK-LGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEAR-RDSE 231 (302)
Q Consensus 154 ~~l~~~~~~-~GI~I~~V~I~~i~~p~~i~~ai~~~~~ae~~~~A~~~~a~~~~ea~~~~a~ae~~~~~i~AeA~-~~a~ 231 (302)
T Consensus 204 ~---kgLDagTAFeIlSIDIADvdVG~NIGA~----Lq~d-QAeADk~vAqAkAE~RRA~--AvA~EQEm~A~vqemrAk 273 (321)
T pfam12127 204 E---KGLDAGTAFEILSIDIADIDVGENIGAR----LQTD-QAEADKRIAQAKAEERRAM--AVAREQEMKAKVQEMRAK 273 (321)
T ss_pred H---CCCCCCCEEEEEEEEEECCCHHHHHCHH----HHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf 5---3678685169998754234122222545----5177-8878789998778889999--999989999999997767
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 863387899999999998757
Q gi|254780959|r 232 INYGKGEAERGRILSNVFQKD 252 (302)
Q Consensus 232 ~~~A~aeA~a~~~~~~a~~~~ 252 (302)
T Consensus 274 vV--eAEaeVP~Ama~A~r~G 292 (321)
T pfam12127 274 VV--EAEAEVPKAMAEAFREG 292 (321)
T ss_pred HH--HHHHHCHHHHHHHHHCC
T ss_conf 31--23201529999999719