Query gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 302
No_of_seqs 189 out of 3146
Neff 8.3
Searched_HMMs 13730
Date Wed Jun 1 11:01:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780959.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wina_ d.43.2.1 (A:) Flotilli 99.6 1.5E-16 1.1E-20 141.7 0.4 129 63-192 6-139 (143)
2 d1l2pa_ f.23.21.1 (A:) F1F0 AT 63.7 3.5 0.00025 17.2 6.6 24 203-226 6-29 (61)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 45.6 5.3 0.00038 15.9 2.1 23 3-25 13-35 (37)
4 d2itba1 a.25.1.7 (A:3-201) Put 21.0 16 0.0012 12.2 3.0 22 244-265 158-179 (199)
5 d1nkta1 a.162.1.1 (A:226-349) 12.8 21 0.0016 11.2 0.1 22 138-159 52-73 (124)
6 d1tf5a1 a.162.1.1 (A:227-348) 11.3 19 0.0014 11.7 -0.6 22 138-159 50-71 (122)
7 d1o1xa_ c.121.1.1 (A:) Putativ 10.4 29 0.0021 10.3 1.9 21 151-171 15-35 (145)
8 d2irfg_ a.4.5.23 (G:) Interfer 10.0 30 0.0022 10.2 1.0 10 48-57 18-35 (109)
9 d1ppjd2 f.23.11.1 (D:196-241) 10.0 30 0.0022 10.2 0.7 18 2-19 4-21 (46)
10 d1t77a2 b.55.1.6 (A:2076-2185) 9.8 30 0.0022 10.1 1.0 38 49-91 53-90 (110)
No 1
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.56 E-value=1.5e-16 Score=141.71 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=113.8
Q ss_pred EEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCHHHHH-----CCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7999875201344331000011222101243321012011012220-----13313346643467778765310112420
Q gi|254780959|r 63 RVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQS-----VSCDRIAAESRLRTRLDASIRRVYGLRRF 137 (302)
Q Consensus 63 ~v~~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~dp~~~~~~-----~~~~~~~~~~~l~~~~~~~lr~v~~~~~~ 137 (302)
.+.+++.|+++++.+.++++|+|+.++.|+++++|||.||.+++.+ ++.....++..+.+.+.+++|+++|++++
T Consensus 6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l 85 (143)
T d1wina_ 6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV 85 (143)
T ss_dssp CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred CEEEEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 50576526786158873679789978999999999984808888888876503658899999999999999987523668
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000121001589999999887422144310000001111012445543112899
Q gi|254780959|r 138 DDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAE 192 (302)
Q Consensus 138 ~e~l~~~R~~i~~~v~~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~~~ae 192 (302)
+++++ +|+++.+.+.+.+++.+.+|||+|.+|.|+||++|+++.+++.+++.|.
T Consensus 86 ~el~~-~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A~ 139 (143)
T d1wina_ 86 EQIYQ-DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp HHHHH-THHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred HHHHH-CHHHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99985-7999999999999999997381898999996188399999999999863
No 2
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=63.68 E-value=3.5 Score=17.23 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899997655778899999768989
Q gi|254780959|r 203 RGREEGQKRMSIADRKATQILSEA 226 (302)
Q Consensus 203 ~~~~ea~~~~a~ae~~~~~i~AeA 226 (302)
+++.++..|+.+|...+..|+.+|
T Consensus 6 eAK~eAa~Ii~qA~~ra~qIveea 29 (61)
T d1l2pa_ 6 KAKAEAQVIIEQANKRRSQILDEA 29 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998899999999
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=45.63 E-value=5.3 Score=15.87 Aligned_cols=23 Identities=39% Similarity=0.743 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHEE
Q ss_conf 51268999999999999983007
Q gi|254780959|r 3 NKSCISFFLFIFLLLGLSFSSFF 25 (302)
Q Consensus 3 ~~~~i~~~v~i~~~~~~~~~~~~ 25 (302)
|++-+-+.+++++++.++|+++|
T Consensus 13 NrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04449999999999999999870
No 4
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=21.02 E-value=16 Score=12.23 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=9.9
Q ss_pred HHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 9999987579999999999999
Q gi|254780959|r 244 ILSNVFQKDPEFFEFYRSMRAY 265 (302)
Q Consensus 244 ~~~~a~~~~p~~~~~~~~l~~~ 265 (302)
.+|..|...+.+..-+..+-..
T Consensus 158 ~LA~~~~~~~~V~~Rl~~ll~~ 179 (199)
T d2itba1 158 KLAHNYGDEADIARCVELVRAA 179 (199)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999978876799999999999
No 5
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.84 E-value=21 Score=11.24 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=12.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0000121001589999999887
Q gi|254780959|r 138 DDALSKQREKMMMEVCEDLRYD 159 (302)
Q Consensus 138 ~e~l~~~R~~i~~~v~~~l~~~ 159 (302)
+.++......+...+..+|+..
T Consensus 52 ~~Ly~~~n~~~~~~v~~AL~A~ 73 (124)
T d1nkta1 52 DNLYEAANSPLVSYLNNALKAK 73 (124)
T ss_dssp SSTTCSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 5534333025999999888877
No 6
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=11.33 E-value=19 Score=11.70 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=11.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0000121001589999999887
Q gi|254780959|r 138 DDALSKQREKMMMEVCEDLRYD 159 (302)
Q Consensus 138 ~e~l~~~R~~i~~~v~~~l~~~ 159 (302)
+.+++.....+...+..+|+..
T Consensus 50 ~~Ly~~~n~~~~~~i~~ALkA~ 71 (122)
T d1tf5a1 50 DNLFDVKHVALNHHINQALKAH 71 (122)
T ss_dssp SCTTSGGGHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 6646612014889999999999
No 7
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=10.38 E-value=29 Score=10.26 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCE
Q ss_conf 999999887422144310000
Q gi|254780959|r 151 EVCEDLRYDAEKLGISIEDVR 171 (302)
Q Consensus 151 ~v~~~l~~~~~~~GI~I~~V~ 171 (302)
++++.|.+.+...|++|.|+.
T Consensus 15 ~lK~~l~~~L~~~g~~v~D~G 35 (145)
T d1o1xa_ 15 ELKEKVKNYLLGKGIEVEDHG 35 (145)
T ss_dssp HHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHCCCEEEECC
T ss_conf 999999999997799999779
No 8
>d2irfg_ a.4.5.23 (G:) Interferon regulatory factor-2, IRF-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.96 E-value=30 Score=10.15 Aligned_cols=10 Identities=40% Similarity=1.188 Sum_probs=7.0
Q ss_pred CCEE--------EEECCC
Q ss_conf 9718--------980763
Q gi|254780959|r 48 PGIY--------FKMPFS 57 (302)
Q Consensus 48 pGlh--------fk~P~~ 57 (302)
|||+ |+|||.
T Consensus 18 pGL~W~D~~k~~FrIPWk 35 (109)
T d2irfg_ 18 PGLKWLNKEKKIFQIPWM 35 (109)
T ss_dssp TTCEEEETTTTEEEEECC
T ss_pred CCCEEECCCCCEEEEECC
T ss_conf 998786499888996163
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.96 E-value=30 Score=10.15 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=7.4
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 851268999999999999
Q gi|254780959|r 2 SNKSCISFFLFIFLLLGL 19 (302)
Q Consensus 2 ~~~~~i~~~v~i~~~~~~ 19 (302)
+.+..+|+-+++++.++.
T Consensus 4 d~RK~mG~Kv~~~l~~l~ 21 (46)
T d1ppjd2 4 DHRKRMGLKMLLMMGLLL 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 789997999999999999
No 10
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.81 E-value=30 Score=10.11 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=16.7
Q ss_pred CEEEEECCCCCCEEEEEEEEEEECCCCCCCCHHCCCCCCCCCC
Q ss_conf 7189807632200379998752013443310000112221012
Q gi|254780959|r 49 GIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQVSDGKFYEV 91 (302)
Q Consensus 49 Glhfk~P~~~~~i~~v~~~~~r~~~~~~~~~~v~T~D~~~v~v 91 (302)
+.+.+||+ +.+..+-.|-.-+...+.++.+.|+...-+
T Consensus 53 ~~~~~w~~-----~~i~~v~~Rr~ll~~~alEif~~~~~s~~~ 90 (110)
T d1t77a2 53 GLHGKWLF-----TEIRSIFSRRYLLQNTALEIFMANRVAVMF 90 (110)
T ss_dssp CTTCEEEG-----GGEEEEEEEEETTEEEEEEEEETTSCEEEE
T ss_pred CCCEEEEH-----HHHHHHHHHHHCCCCEEEEEEECCCCEEEE
T ss_conf 41217769-----997888846522776499999739969999
Done!