BLAST/PSIBLAST alignment of GI: 254780959 and GI: 116252996 at iteration 1
>gi|116252996|ref|YP_768834.1| transmembrane serine protease [Rhizobium leguminosarum bv. viciae 3841] Length = 321
>gi|115257644|emb|CAK08741.1| putative transmembrane serine protease [Rhizobium leguminosarum bv. viciae 3841] Length = 321
 Score =  340 bits (872), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/288 (57%), Positives = 224/288 (77%), Gaps = 1/288 (0%)

Query: 2   SNKSCISFFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNV 61
           SN+  I F +   +L+GL +SS F+V+AR+QAIV RFG+I +   EPGIYFK+PF FM+ 
Sbjct: 3   SNRLPIIFIILAIVLVGL-YSSIFVVNAREQAIVVRFGQIQSVKTEPGIYFKLPFGFMDA 61

Query: 62  DRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLR 121
           DRV+ ++KQ +RL+LDNIRVQV DG+ ++VDA + Y I D   F ++VS DR AAE+RLR
Sbjct: 62  DRVQLVEKQALRLDLDNIRVQVQDGQTFDVDAFVIYNIADVRRFRETVSGDREAAEARLR 121

Query: 122 TRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEV 181
            +LD+S+RRVYGLR ++ ALS++R  MM+E+ +DLR DAE LG+ I+DVR+ RTDL+ EV
Sbjct: 122 AQLDSSLRRVYGLRDYNAALSEERVAMMLEIRDDLRTDAENLGLHIDDVRIRRTDLSPEV 181

Query: 182 SQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAER 241
           +  TY+ M++ERLAEAE IRA G EEGQ+R +IADR+  +  + A+RD+EI  G+G+AER
Sbjct: 182 APNTYNAMRSERLAEAERIRAEGNEEGQRRRAIADRQVVEFTAGAQRDAEILRGQGDAER 241

Query: 242 GRILSNVFQKDPEFFEFYRSMRAYTDSLASSDTFLVLSPDSDFFKYFD 289
            R+ + VF KDP FFEFYRSM AY+ +L+S DT LVLSP+S+FF+YFD
Sbjct: 242 NRVFAEVFSKDPAFFEFYRSMAAYSSALSSQDTTLVLSPNSEFFRYFD 289