RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780959|ref|YP_003065372.1| putative hydrolase serine
protease transmembrane protein [Candidatus Liberibacter asiaticus str.
psy62]
         (302 letters)



>gnl|CDD|48217 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin
           (reggie) like proteins. This group includes proteins
           similar to prokaryotic HlfC (High frequency of
           lysogenization C). Although many members of the band 7
           family are lipid raft associated, prokaryote plasma
           membranes lack cholesterol and are unlikely to have
           lipid raft domains.  Individual proteins of this band 7
           domain family may cluster to form membrane microdomains
           which may in turn recruit multiprotein complexes.
           Escherichia coli HflC is an integral membrane protein
           which may localize to the plasma membrane. HflC
           associates with another band 7 family member (HflK) to
           form an HflKC complex.  HflKC interacts with FtsH in a
           large complex termed the FtsH holo-enzyme. FtsH is an
           AAA ATP-dependent protease which exerts progressive
           proteolysis against membrane-embedded and soluble
           substrate proteins.  HflKC can modulate the activity of
           FtsH. HflKC plays a role in the decision between
           lysogenic and lytic cycle growth during lambda phage
           infection..
          Length = 242

 Score =  234 bits (599), Expect = 2e-62
 Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 4/246 (1%)

Query: 24  FFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQV 83
            FIVD  +QA+V RFG++     EPG++FK+PF    + +VK   K+I+ L+ D  RV  
Sbjct: 1   LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPF----IQQVKKFDKRILTLDSDPQRVLT 56

Query: 84  SDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSK 143
            D K   VDA   +RI DP  F Q+V  +  AAE+RL   +++++R  +G R   + +S 
Sbjct: 57  KDKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSG 116

Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRAR 203
           +R ++M E+   +  +A++LGI + DVR+ R DL +EVS+  Y RM+AER   A   RA 
Sbjct: 117 ERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAE 176

Query: 204 GREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMR 263
           G EE ++  + ADR+ T IL+EA R+++   G+G+AE  RI +  + KDPEF+ FYRS+ 
Sbjct: 177 GEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLE 236

Query: 264 AYTDSL 269
           AY +S 
Sbjct: 237 AYRNSF 242


>gnl|CDD|30678 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
           homologs [Posttranslational modification, protein
           turnover, chaperones].
          Length = 291

 Score =  170 bits (431), Expect = 5e-43
 Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 8/280 (2%)

Query: 7   ISFFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKY 66
           I   + + +L+ L FSS F+V   ++ +V RFG+   T  EPG++FK+PF     + V  
Sbjct: 4   ILIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVR 63

Query: 67  LQKQIMRLNL-DNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLD 125
           +  +   L++     V   D     VDA++ YR+ DP     +V      AE+ LR  + 
Sbjct: 64  VDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYNVE----NAEAALRQLVQ 119

Query: 126 ASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQT 185
           +++R V G    D+ L+++R ++  ++ E L   A+  GI + DV +   D  +EV    
Sbjct: 120 SALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAM 179

Query: 186 YDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRIL 245
             +M AER   AE + A G  +     +  + +A  IL+EA  ++E+   + EA+  +I+
Sbjct: 180 EKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEV-IARAEADAAKII 238

Query: 246 SNVFQKDP--EFFEFYRSMRAYTDSLASSDTFLVLSPDSD 283
           +   ++ P        R +    +   + ++ +V+ P+S 
Sbjct: 239 AAALREAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSA 278


>gnl|CDD|144658 pfam01145, Band_7, SPFH domain / Band 7 family.  This family has
           been called SPFH, Band 7 or PHB domain.
          Length = 177

 Score = 96.7 bits (241), Expect = 6e-21
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 9/182 (4%)

Query: 25  FIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNL-DNIRVQV 83
            IV   +  +VTRFGK+      PG++FK+PF    ++ +  +  ++  L +   + V  
Sbjct: 1   KIVPPGEVGVVTRFGKVSRV-LGPGLHFKLPF----IETIYVVDTRLQTLEVTVQLEVLT 55

Query: 84  SDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSK 143
            DG    VD  + YR+ DP+    +        +  LR  + +++R V      D+ LS 
Sbjct: 56  KDGVPVTVDVTVQYRVEDPAKLVANYG-GEDDLQELLRPLVRSALREVIARYTLDELLSN 114

Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAE-RLAEAEFIRA 202
            RE++  EV E L+ + +K GI IEDV++   D   E+++   ++  AE    EAE  RA
Sbjct: 115 -REEIAQEVKEALQEELDKYGIEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEAEIERA 173

Query: 203 RG 204
             
Sbjct: 174 EA 175


>gnl|CDD|48216 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
           (reggie) like proteins. This group includes proteins
           similar to prokaryotic HlfK (High frequency of
           lysogenization K). Although many members of the band 7
           family are lipid raft associated, prokaryote plasma
           membranes lack cholesterol and are unlikely to have
           lipid raft domains.  Individual proteins of this band 7
           domain family may cluster to form membrane microdomains
           which may in turn recruit multiprotein complexes.
           Escherichia coli HflK is an integral membrane protein
           which may localize to the plasma membrane. HflK
           associates with another band 7 family member (HflC) to
           form an HflKC complex.  HflKC interacts with FtsH in a
           large complex termed the FtsH holo-enzyme. FtsH is an
           AAA ATP-dependent protease which exerts progressive
           proteolysis against membrane-embedded and soluble
           substrate proteins.  HflKC can modulate the activity of
           FtsH. HflKC plays a role in the decision between
           lysogenic and lytic cycle growth during lambda phage
           infection..
          Length = 266

 Score = 96.0 bits (239), Expect = 1e-20
 Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 34/265 (12%)

Query: 10  FLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQK 69
            +   L++    S F+IV   ++ +V RFGK   T  EPG+++K+P+    V+ V   Q 
Sbjct: 1   LIAALLVILWLLSGFYIVQPGERGVVLRFGKYSRT-VEPGLHWKLPYPIEVVEVVPVFQL 59

Query: 70  QIMRLNLDNIRVQ---------VSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRL 120
           + + + +    V+           D    +V+  + YRI DP  +  +V       E  L
Sbjct: 60  RSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYRISDPYDYLFNVR----DPEGTL 115

Query: 121 RTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDL--RYDAEKLGISIEDVRVLRTDLT 178
           R   ++++R V G    DD L++ RE++  +V E L    DA K GI I  V +   D  
Sbjct: 116 RQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPP 175

Query: 179 QEV---------SQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRD 229
           +EV         ++Q  +R+  E  A A  +  + R E  + +  A         EA ++
Sbjct: 176 EEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEA---------EAYKE 226

Query: 230 SEINYGKGEAERGRILSNVFQKDPE 254
             I   +GEA R   L   ++K P+
Sbjct: 227 EVIAEAQGEAARFESLLAEYKKAPD 251


>gnl|CDD|48215 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
           the band 7 domain of flotillin (reggie) like proteins
           similar to stomatin and podicin (two lipid
           raft-associated integral membrane proteins). Individual
           proteins of this band 7 domain family may cluster to
           form membrane microdomains which may in turn recruit
           multiprotein complexes. Stomatin is widely expressed
           and, highly expressed in red blood cells. It localizes
           predominantly to the plasma membrane and to
           intracellular vesicles of the endocytic pathway, where
           it is present in higher order homo-oligomeric complexes
           (of between 9 and 12 monomers).  Stomatin interacts with
           and regulates members of the degenerin/epithelia Na+
           channel family in mechanosensory cells of Caenorhabditis
           elegans and vertebrate neurons and, is implicated in
           trafficking of Glut1 glucose transporters. Prohibitin is
           a mitochondrial inner-membrane protein hypothesized to
           act as a chaperone for the stabilization of
           mitochondrial proteins. Podicin localizes to the plasma
           membrane of podocyte foot processes and, is found in
           higher order oligomers. Podocin plays a role in
           regulating glomerular permeability.  Mutations in the
           podicin gene give rise to autosomal recessive steroid
           resistant nephritic syndrome.  This group also contains
           proteins similar to three Caenorhabditis elegans
           proteins: UNC-1, UNC-24 and, MEC-2.  Mutations in the
           unc-1 and unc-24 genes result in abnormal motion and
           altered patterns of sensitivity to volatile anesthetics.
           MEC-2 and UNC-24 proteins interact with MEC-4 which is
           part of the degenerin channel complex required for
           response to gentle body touch..
          Length = 215

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 22/208 (10%)

Query: 27  VDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQK-QIMRLNLDNIRVQVSD 85
           V   ++ +V R GK H T   PG++F +PF    +DR+ Y    +   L++    V   D
Sbjct: 1   VPQYERGVVERLGKYHRT-LGPGLHFIIPF----IDRIAYKVDLREQVLDVPPQEVITKD 55

Query: 86  GKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQR 145
                VDA++ YR++DP      V   R A     +T    ++R V G    D+ LS +R
Sbjct: 56  NVTVRVDAVLYYRVVDPVKAVYGVEDYRYAISQLAQT----TLRSVIGKMELDELLS-ER 110

Query: 146 EKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGR 205
           E++  E+ E L    +  G+ +E V +    L QE+ +    + +AER   A+ I A G 
Sbjct: 111 EEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEG- 169

Query: 206 EEGQKRMSIADRKATQILSEARRDSEIN 233
                     +R+A  +L+EA + + IN
Sbjct: 170 ----------ERQAAILLAEAAKQAAIN 187


>gnl|CDD|37831 KOG2620, KOG2620, KOG2620, Prohibitins and stomatins of the PID
           superfamily [Energy production and conversion].
          Length = 301

 Score = 65.0 bits (158), Expect = 3e-11
 Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 13/218 (5%)

Query: 26  IVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLD-NIRVQVS 84
            V  ++ A+V RFGK H    EPG++F  P     +D++ Y+        LD        
Sbjct: 11  FVPQQEAAVVERFGKFHRIL-EPGLHFLPPV----IDKIAYVHSLKEIAILDPKQEAITK 65

Query: 85  DGKFYEVDAMMTYRIIDPSLFCQS--VSCDRIAAESRLRTRLDASIRRVYGLRRFDDALS 142
           D  F ++D ++ YR++DP     S  V     A +   +T + + + ++       D + 
Sbjct: 66  DNVFVQIDGVLYYRVVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTL-----DKVF 120

Query: 143 KQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRA 202
           ++R  +   + E +    E  G       +   +    V +    + +AER+  A  + +
Sbjct: 121 EERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILES 180

Query: 203 RGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAE 240
            G    Q   +  ++++  + SE       N   GEAE
Sbjct: 181 EGERIAQINRAEGEKESKILASEGIARQRQNIADGEAE 218


>gnl|CDD|48210 cd02106, Band_7, The band 7 domain of flotillin (reggie) like
           proteins. This group contains proteins similar to
           stomatin, prohibitin, flotillin, HlfK/C and podicin.
           Many of these band 7 domain-containing proteins are
           lipid raft-associated.  Individual proteins of this band
           7 domain family may cluster to form membrane
           microdomains which may in turn recruit multiprotein
           complexes. Microdomains formed from flotillin proteins
           may in addition be dynamic units with their own
           regulatory functions.  Flotillins have been implicated
           in signal transduction, vesicle trafficking,
           cytoskeleton rearrangement and are known to interact
           with a variety of proteins.  Stomatin interacts with and
           regulates members of the degenerin/epithelia Na+ channel
           family in mechanosensory cells of Caenorhabditis elegans
           and vertebrate neurons and participates in trafficking
           of Glut1 glucose transporters. Prohibitin may act as a
           chaperone for the stabilization of mitochondrial
           proteins.  Prokaryotic HflK/C plays a role in the
           decision between lysogenic and lytic cycle growth during
           lambda phage infection. Flotillins have been implicated
           in the progression of prion disease, in the pathogenesis
           of neurodegenerative diseases such as Parkinson's and
           Alzheimer's disease and, in cancer invasion and
           metastasis. Mutations in the podicin gene give rise to
           autosomal recessive steroid resistant nephritic
           syndrome.
          Length = 121

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 69  KQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASI 128
            +   L++    V   D     VDA++ YR++DP     +V       E  LR    +++
Sbjct: 4   LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNV--RDPEDEEALRQLAQSAL 61

Query: 129 RRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDR 188
           R V G    D+ L + R+++  EV E L+ D +K GI + DVR+   D  +EV +   DR
Sbjct: 62  RSVIGKMTLDE-LLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120

Query: 189 M 189
            
Sbjct: 121 Q 121


>gnl|CDD|37832 KOG2621, KOG2621, KOG2621, Prohibitins and stomatins of the PID
           superfamily [Energy production and conversion].
          Length = 288

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 27/229 (11%)

Query: 7   ISFFLFIFLLLGLSFSSFF---IVDARQQAIVTRFGKI-HATYREPGIYFKMPF--SFMN 60
           +    F+ +L+    S +F   IV   ++A++ R G++     R PG++F +P   +F  
Sbjct: 35  LVILSFLLVLMTFPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRK 94

Query: 61  VDRVKYLQKQIMRLNLDNIRVQ---VSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAE 117
           VD         +R    N+  Q     D     VDA++ YRI DP +   +V  D   A 
Sbjct: 95  VD---------LRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAVNNVG-DADNAT 144

Query: 118 SRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDL 177
             L      ++R   G +   + LS  RE +  E  + L    E  G+ +E V +    L
Sbjct: 145 RLLAQ---TTLRNYLGTKTLSEILS-SREVIAQEAQKALDEATEPWGVKVERVEIKDVRL 200

Query: 178 TQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEA 226
             ++ +      +A R A A+ I A    EG+K+ S A ++A  ++SE+
Sbjct: 201 PAQLQRAMAAEAEATREARAKVIAA----EGEKKASEALKEAADVISES 245


>gnl|CDD|48214 cd03402, Band_7_2, A subgroup of the band 7 domain of flotillin
           (reggie) like proteins. This subgroup contains proteins
           similar to stomatin, prohibitin, flotillin, HlfK/C and
           podicin.  Many of these band 7 domain-containing
           proteins are lipid raft-associated.  Individual proteins
           of this band 7 domain family may cluster to form
           membrane microdomains which may in turn recruit
           multiprotein complexes.  Microdomains formed from
           flotillin proteins may in addition be dynamic units with
           their own regulatory functions.  Flotillins have been
           implicated in signal transduction, vesicle trafficking,
           cytoskeleton rearrangement and are known to interact
           with a variety of proteins.  Stomatin interacts with and
           regulates members of the degenerin/epithelia Na+ channel
           family in mechanosensory cells of Caenorhabditis elegans
           and vertebrate neurons and participates in trafficking
           of Glut1 glucose transporters. Prohibitin may act as a
           chaperone for the stabilization of mitochondrial
           proteins.  Prokaryotic HflK/C plays a role in the
           decision between lysogenic and lytic cycle growth during
           lambda phage infection. Flotillins have been implicated
           in the progression of prion disease, in the pathogenesis
           of neurodegenerative diseases such as Parkinson's and
           Alzheimer's disease and, in cancer invasion and
           metastasis. Mutations in the podicin gene give rise to
           autosomal recessive steroid resistant nephritic
           syndrome..
          Length = 219

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 34/181 (18%), Positives = 81/181 (44%), Gaps = 15/181 (8%)

Query: 23  SFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQ 82
             F+V+  Q  ++  FG+   T R  G+ +  PFS       K +  ++     + ++V 
Sbjct: 1   GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-----KRVSLRVRNFESEKLKVN 55

Query: 83  VSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALS 142
            ++G   E+ A++ +R++D +    +V       E  +  + ++++R V     +DD ++
Sbjct: 56  DANGNPIEIAAVIVWRVVDTAKAVFNVD----DYEEFVHIQSESALRHVASQYPYDDPVN 111

Query: 143 KQR------EKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAE 196
           K+       +++  E+  +L+      G+ + + R+       E++Q    R +A  +  
Sbjct: 112 KETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQASAIIA 171

Query: 197 A 197
           A
Sbjct: 172 A 172


>gnl|CDD|48220 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin
           (reggie) like proteins. This subgroup contains proteins
           similar to stomatin, prohibitin, flotillin, HlfK/C and
           podicin.  Many of these band 7 domain-containing
           proteins are lipid raft-associated.  Individual proteins
           of this band 7 domain family may cluster to form
           membrane microdomains which may in turn recruit
           multiprotein complexes.  Microdomains formed from
           flotillin proteins may in addition be dynamic units with
           their own regulatory functions.  Flotillins have been
           implicated in signal transduction, vesicle trafficking,
           cytoskeleton rearrangement and are known to interact
           with a variety of proteins.  Stomatin interacts with and
           regulates members of the degenerin/epithelia Na+ channel
           family in mechanosensory cells of Caenorhabditis elegans
           and vertebrate neurons and participates in trafficking
           of Glut1 glucose transporters. Prohibitin may act as a
           chaperone for the stabilization of mitochondrial
           proteins.  Prokaryotic HflK/C plays a role in the
           decision between lysogenic and lytic cycle growth during
           lambda phage infection. Flotillins have been implicated
           in the progression of prion disease, in the pathogenesis
           of neurodegenerative diseases such as Parkinson's and
           Alzheimer's disease and, in cancer invasion and
           metastasis. Mutations in the podicin gene give rise to
           autosomal recessive steroid resistant nephritic
           syndrome..
          Length = 207

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 26/196 (13%)

Query: 19  LSFSSFFIVDARQQAIVTRFGKIHATYREPGIYF---------------KMPFSFMNVDR 63
           +   S  IV   Q A+    GK+   +   G Y                K   S    + 
Sbjct: 11  IKNGSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV 70

Query: 64  VKYLQKQI--MRLNLDNIRVQVS---DGKFYEVDAMMTYRIIDPSLFCQSV-----SCDR 113
             +  +    +                G         + ++ DP LF  ++         
Sbjct: 71  YFFNTRVFTDLLWGTPAPVFGRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTV 130

Query: 114 IAAESRLRTRLDASIRRVYG-LRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRV 172
              E  LR  + A++             L+  R+++   V E L       G+ +  V +
Sbjct: 131 EDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLELVSVYI 190

Query: 173 LRTDLTQEVSQQTYDR 188
                  EV +    R
Sbjct: 191 ESISYPDEVQKLIDKR 206


>gnl|CDD|48219 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin
           (reggie) like proteins. This subgroup contains proteins
           similar to stomatin, prohibitin, flotillin, HlfK/C and
           podicin.  Many of these band 7 domain-containing
           proteins are lipid raft-associated.  Individual proteins
           of this band 7 domain family may cluster to form
           membrane microdomains which may in turn recruit
           multiprotein complexes.  Microdomains formed from
           flotillin proteins may in addition be dynamic units with
           their own regulatory functions.  Flotillins have been
           implicated in signal transduction, vesicle trafficking,
           cytoskeleton rearrangement and are known to interact
           with a variety of proteins.  Stomatin interacts with and
           regulates members of the degenerin/epithelia Na+ channel
           family in mechanosensory cells of Caenorhabditis elegans
           and vertebrate neurons and participates in trafficking
           of Glut1 glucose transporters. Prohibitin may act as a
           chaperone for the stabilization of mitochondrial
           proteins.  Prokaryotic HflK/C plays a role in the
           decision between lysogenic and lytic cycle growth during
           lambda phage infection. Flotillins have been implicated
           in the progression of prion disease, in the pathogenesis
           of neurodegenerative diseases such as Parkinson's and
           Alzheimer's disease and, in cancer invasion and
           metastasis. Mutations in the podicin gene give rise to
           autosomal recessive steroid resistant nephritic
           syndrome..
          Length = 262

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 53/218 (24%), Positives = 83/218 (38%), Gaps = 35/218 (16%)

Query: 31  QQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQ--VSDGKF 88
           Q AI+ RFGK       PG +F +P       R+       +R+   ++RV+    D  F
Sbjct: 3   QVAIIERFGKFFKV-AWPGCHFVIPLVETVAGRLS------LRVQQLDVRVETKTKDNVF 55

Query: 89  YEVDAMMTYRIID------PSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALS 142
             V   + YR+ +                 +      LR R+         L    D L 
Sbjct: 56  VTVVGQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPK-----LTL----DELF 106

Query: 143 KQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRA 202
           +Q++++   V E+LR    + G  I    +   D   EV +   +   A+R   A    A
Sbjct: 107 EQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVA----A 162

Query: 203 RGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAE 240
             + E +K   I D KA +  +EA+R      G G AE
Sbjct: 163 VHKAEAEK---IKDIKAAEADAEAKRLQ----GVGAAE 193


>gnl|CDD|38293 KOG3083, KOG3083, KOG3083, Prohibitin [Posttranslational
           modification, protein turnover, chaperones].
          Length = 271

 Score = 36.9 bits (85), Expect = 0.007
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 19/110 (17%)

Query: 136 RFD-DALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLT-----------QEVSQ 183
           RFD   L  QRE +  +V  DL   A   G+ ++DV    T LT           ++V+Q
Sbjct: 133 RFDAGELITQRELVSRQVSNDLTERAATFGLILDDVS--ITHLTFGKEFTEAVEAKQVAQ 190

Query: 184 QTYDR-----MKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARR 228
           Q  +R      KAE+  +A  I A G  +  + ++ +   A   L E RR
Sbjct: 191 QEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRR 240


>gnl|CDD|38300 KOG3090, KOG3090, KOG3090, Prohibitin-like protein
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 290

 Score = 34.6 bits (79), Expect = 0.039
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 23/145 (15%)

Query: 141 LSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAE-AEF 199
           L  QRE++   + + L   A    I+++DV +      +E +     +  A + A+ A+F
Sbjct: 150 LITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKF 209

Query: 200 IRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEF- 258
           I  +  +E Q                    S I   +GEA+  +++    + +P F    
Sbjct: 210 IVEKAEQEKQ--------------------SAIVRAQGEAKSAQLIGEAIKNNPAFITLR 249

Query: 259 -YRSMRAYTDSLASSDTFLVLSPDS 282
              + R    ++ASS   + LS D 
Sbjct: 250 KIEAAREIAQTIASSANKVYLSSDD 274


>gnl|CDD|32449 COG2268, COG2268, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 548

 Score = 32.3 bits (73), Expect = 0.14
 Identities = 44/254 (17%), Positives = 78/254 (30%), Gaps = 52/254 (20%)

Query: 11  LFIFLLLGLSFSSF-FIVDARQQAIVTRFGKIHATYRE---------PGIYFKMPFSFMN 60
           + I ++L L F    F + AR    + R G    +  E          G    MP     
Sbjct: 19  VVILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPI---- 74

Query: 61  VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAM-MTYRIIDPSLFCQSVSCDRIAAESR 119
                   + I R++L  I+++V     Y  D M +    +       +      AAE  
Sbjct: 75  -------FQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERF 127

Query: 120 LRTRLDASIRRVYGLRRFDDAL------------SKQREKMMMEVCEDLRYDAEKLGISI 167
                   + ++      + AL            ++ R      V E +  D  K+G+ +
Sbjct: 128 GGKGSREDLEQLAE-DTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVL 186

Query: 168 EDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEAR 227
           + + +   D+              E      ++ A GR        IA       ++E  
Sbjct: 187 DSLAI--NDINDT---------SKENQDPNNYLDALGRRR------IAQVLQDAEIAENE 229

Query: 228 RDSEINYGKGEAER 241
            + E      EA R
Sbjct: 230 AEKETEIAIAEANR 243


>gnl|CDD|48213 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
           band 7 domain of flotillin (reggie) like proteins. This
           subgroup group includes proteins similar to prohibitin
           (a lipid raft-associated integral membrane protein).
           Individual proteins of this band 7 domain family may
           cluster to form membrane microdomains which may in turn
           recruit multiprotein complexes. These microdomains in
           addition to being stable scaffolds may also be also
           dynamic units with their own regulatory functions.
           Prohibitin is a mitochondrial inner-membrane protein
           which may act as a chaperone for the stabilization of
           mitochondrial proteins.  Human prohibitin forms a
           heter-oligomeric complex with Bap-37 (prohibitin 2, a
           band 7 domain carrying homologue). This complex may
           protect non-assembled membrane proteins against
           proteolysis by the m-AAA protease. Prohibitin and Bap-37
           yeast homologues have been implicated in yeast longevity
           and, in the maintenance of mitochondrial morphology..
          Length = 196

 Score = 32.5 bits (74), Expect = 0.15
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 18/82 (21%)

Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLT-----------QEVSQQ-----TYD 187
           QRE++   + E L   A+  GI ++DV +  T LT           ++V+QQ      + 
Sbjct: 117 QREEVSALIREALTERAKDFGIILDDVSI--THLTFSKEFTKAVEAKQVAQQEAERAKFV 174

Query: 188 RMKAERLAEAEFIRARGREEGQ 209
             KAE+  +A  IRA G  E  
Sbjct: 175 VEKAEQEKQAAVIRAEGEAEAA 196


>gnl|CDD|48212 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin
           (reggie) like proteins. This subgroup contains proteins
           similar to stomatin, prohibitin, flotillin, HlfK/C and
           podicin.  Many of these band 7 domain-containing
           proteins are lipid raft-associated.  Individual proteins
           of this band 7 domain family may cluster to form
           membrane microdomains which may in turn recruit
           multiprotein complexes.  Microdomains formed from
           flotillin proteins may in addition be dynamic units with
           their own regulatory functions.  Flotillins have been
           implicated in signal transduction, vesicle trafficking,
           cytoskeleton rearrangement and are known to interact
           with a variety of proteins.  Stomatin interacts with and
           regulates members of the degenerin/epithelia Na+ channel
           family in mechanosensory cells of Caenorhabditis elegans
           and vertebrate neurons and participates in trafficking
           of Glut1 glucose transporters. Prohibitin may act as a
           chaperone for the stabilization of mitochondrial
           proteins.  Prokaryotic HflK/C plays a role in the
           decision between lysogenic and lytic cycle growth during
           lambda phage infection. Flotillins have been implicated
           in the progression of prion disease, in the pathogenesis
           of neurodegenerative diseases such as Parkinson's and
           Alzheimer's disease and, in cancer invasion and
           metastasis. Mutations in the podicin gene give rise to
           autosomal recessive steroid resistant nephritic
           syndrome..
          Length = 124

 Score = 32.6 bits (74), Expect = 0.15
 Identities = 19/105 (18%), Positives = 40/105 (38%)

Query: 77  DNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRR 136
           + I V   +G     D  + YRI                A   +R    + +R V G   
Sbjct: 12  EKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYT 71

Query: 137 FDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEV 181
            +   S +R+++   + ++L  +    G+ +E+V +    L  ++
Sbjct: 72  AEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQI 116


>gnl|CDD|35385 KOG0163, KOG0163, KOG0163, Myosin class VI heavy chain
           [Cytoskeleton].
          Length = 1259

 Score = 31.1 bits (70), Expect = 0.42
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 135 RRFDDALSKQREKMMMEVCEDLRYDAEKLGISIED-VRVLRTDLTQEVSQQTYDRMKAER 193
           R+ DD + K   KM      ++  + +    + E  V+ L +   Q++ +    R K + 
Sbjct: 875 RQIDDLVKKI--KMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLR-KIQE 931

Query: 194 LAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSE 231
           LAEAE  R R   E ++R    ++K  +   E +R +E
Sbjct: 932 LAEAE--RKRREAEEKRRREEEEKKRAKAEMETKRKAE 967


>gnl|CDD|48218 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin
           (reggie) like proteins. This subgroup contains proteins
           similar to stomatin, prohibitin, flotillin, HlfK/C and
           podicin.  Many of these band 7 domain-containing
           proteins are lipid raft-associated.  Individual proteins
           of this band 7 domain family may cluster to form
           membrane microdomains which may in turn recruit
           multiprotein complexes.  Microdomains formed from
           flotillin proteins may in addition be dynamic units with
           their own regulatory functions.  Flotillins have been
           implicated in signal transduction, vesicle trafficking,
           cytoskeleton rearrangement and are known to interact
           with a variety of proteins.  Stomatin interacts with and
           regulates members of the degenerin/epithelia Na+ channel
           family in mechanosensory cells of Caenorhabditis elegans
           and vertebrate neurons and participates in trafficking
           of Glut1 glucose transporters. Prohibitin may act as a
           chaperone for the stabilization of mitochondrial
           proteins.  Prokaryotic HflK/C plays a role in the
           decision between lysogenic and lytic cycle growth during
           lambda phage infection. Flotillins have been implicated
           in the progression of prion disease, in the pathogenesis
           of neurodegenerative diseases such as Parkinson's and
           Alzheimer's disease and, in cancer invasion and
           metastasis. Mutations in the podicin gene give rise to
           autosomal recessive steroid resistant nephritic
           syndrome..
          Length = 280

 Score = 30.0 bits (67), Expect = 0.79
 Identities = 49/267 (18%), Positives = 102/267 (38%), Gaps = 41/267 (15%)

Query: 21  FSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIR 80
            S+   ++     +  R G +  +   PG +  +PF    +   K +Q  +    + N+ 
Sbjct: 2   SSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPF----ITTYKSVQVTLQTDEVKNVP 57

Query: 81  VQVSDGKFYEVDAMMTYRIIDPS-----LFCQSVSCDRIAAESRLRTRLDA-----SIRR 130
              S G     D +     + P      +   +   D+    +++   L+      +++ 
Sbjct: 58  CGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQE 117

Query: 131 VYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMK 190
           VY +  FD    +  E + + + +DL   A   G+ I+ VRV +  + + + ++ Y+ M+
Sbjct: 118 VY-IDLFD----QIDENLKLALQKDLTRMAP--GLEIQAVRVTKPKIPEAI-RRNYELME 169

Query: 191 AERL-------------AEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKG 237
           AE+               EAE  R +   E +K   +A     Q + E   +  I+  + 
Sbjct: 170 AEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIED 229

Query: 238 EAERGRILSNVFQKDPEFFEFYRSMRA 264
           EA   R      +K     E+Y + + 
Sbjct: 230 EAFLAR------EKAKADAEYYTAQKE 250



 Score = 28.4 bits (63), Expect = 2.7
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 154 EDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMS 213
           E +  +  KL I+I+  +V+  +   E  +   +  K  ++A+  F +    +E +KR+S
Sbjct: 166 ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRIS 225

Query: 214 IADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFE--FYRSMRAYT 266
             + +A     +A+ D+E    + EAE     +N  +  PE+ E   Y ++ A +
Sbjct: 226 EIEDEAFLAREKAKADAEYYTAQKEAE-----ANKLKLTPEYLELMKYEAIAANS 275


>gnl|CDD|37110 KOG1899, KOG1899, KOG1899, LAR transmembrane tyrosine
           phosphatase-interacting protein liprin [General function
           prediction only].
          Length = 861

 Score = 29.7 bits (66), Expect = 0.89
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 9/136 (6%)

Query: 140 ALSKQREKMMMEVCE-DLRYDA-EKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEA 197
           +L  Q+  +M EV E  L+  A EK     E    L  +L QEV+Q     +  ERL   
Sbjct: 171 SLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYE 230

Query: 198 EFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRI------LSNVFQK 251
             +++   E    R   ++ K  + +   R   +     GE +  R       L ++ + 
Sbjct: 231 TKLKSTKGEMAPLREQRSE-KNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRA 289

Query: 252 DPEFFEFYRSMRAYTD 267
           + +   F  S+R Y +
Sbjct: 290 NEQKDRFIESLRNYLN 305


>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
          Length = 403

 Score = 29.5 bits (67), Expect = 1.1
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 1   MSNKSCISF-FLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFM 59
              K+  SF F+F + L+   +S F IV +      + F           +   +P  FM
Sbjct: 340 SFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNF-------NVGLSLPLVFM 392

Query: 60  N 60
            
Sbjct: 393 M 393


>gnl|CDD|38173 KOG2962, KOG2962, KOG2962, Prohibitin-related membrane protease
           subunits [General function prediction only].
          Length = 322

 Score = 28.5 bits (63), Expect = 2.6
 Identities = 53/277 (19%), Positives = 106/277 (38%), Gaps = 41/277 (14%)

Query: 10  FLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQK 69
              I LL+    S+   ++     +  R G +  +   PG +  +PF    +   K +Q 
Sbjct: 9   AAAIALLVAFLSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPF----ITTYKSVQV 64

Query: 70  QIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPS-----LFCQSVSCDRIAAESRLRTRL 124
            +    + N+    S G     D +     + P      +   +V  D+    +++   L
Sbjct: 65  TLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHEL 124

Query: 125 DA-----SIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQ 179
           +      +++ VY +  FD    +  E +   +  DL   A   G+ I+ VRV +  + +
Sbjct: 125 NQFCSVHTLQEVY-IDLFD----QIDENLKDALQADLTRMAP--GLEIQAVRVTKPKIPE 177

Query: 180 EVSQQTYDRMKAERL-------------AEAEFIRARGREEGQKRMSIADRKATQILSEA 226
            + ++ ++ M+AE+               EAE  R +   E +K   +A     Q L E 
Sbjct: 178 AI-RRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEK 236

Query: 227 RRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMR 263
             +  I+  +  A   R      +K     E+YR+++
Sbjct: 237 ETEKRISEIEDAAFLAR------EKSKADAEYYRALK 267


>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
          Length = 256

 Score = 27.6 bits (62), Expect = 4.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 1   MSNKSCISFFLFIFLLLGLSFSSF 24
           +SNKSC +  L +   LGL F+SF
Sbjct: 149 LSNKSC-TNSLLLTCFLGLYFTSF 171


>gnl|CDD|33674 COG3885, COG3885, Uncharacterized conserved protein [Function
           unknown].
          Length = 261

 Score = 27.6 bits (61), Expect = 4.7
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 248 VFQKDPEFFEFYRSMRAYTDSLASSDTFLVLSP 280
           +  +D E  +  ++++        S+T++V+SP
Sbjct: 15  IDPEDEESRKLNKAIKEIASDDKGSETYVVISP 47


>gnl|CDD|35900 KOG0681, KOG0681, KOG0681, Actin-related protein - Arp5p
           [Cytoskeleton].
          Length = 645

 Score = 27.3 bits (60), Expect = 5.4
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 113 RIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRV 172
           + + ++RLR R++  + R+       + L ++RE+ ++   E+LR   EKL   I   + 
Sbjct: 357 KASTDARLRARVEKELERL-------NKLEEEREENLISWLEELREKLEKLLERISQKKR 409

Query: 173 LRTDLTQEVSQQTYDRMKA-ERLAEAEFIR--ARGREEGQKRMSIADRKATQILSEARRD 229
           L+ +L    S  +  RM+A  RLA  + +R   +            D    + L E  + 
Sbjct: 410 LKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKS 469

Query: 230 SE 231
             
Sbjct: 470 IL 471


>gnl|CDD|33246 COG3442, COG3442, Predicted glutamine amidotransferase [General
           function prediction only].
          Length = 250

 Score = 26.8 bits (59), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 156 LRYDAEKLGISIEDVRVLRTDLTQEVSQQTYD 187
           LR  AEK GI +E   ++   LT      +YD
Sbjct: 26  LRQRAEKRGIKVE---IVEVSLTDTFPDDSYD 54


>gnl|CDD|145733 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde
           dehydrogenase. 
          Length = 543

 Score = 26.5 bits (59), Expect = 9.3
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 16/73 (21%)

Query: 145 REKMMMEVCEDLRYDAEKLGISIEDVRVL-------RTDLTQEVSQQTYDRMKAERLAEA 197
            E+++ E+       A +LGI   ++R          T   Q +          E    +
Sbjct: 224 LERLIDEL-------ARELGIDPLEIRRKNLYKEGDTTPFGQRLDSGNLPECLDECRKSS 276

Query: 198 EFIRARGREEGQK 210
           EF RAR R   +K
Sbjct: 277 EF-RAR-RAAVEK 287


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.326    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,663,332
Number of extensions: 196238
Number of successful extensions: 1082
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 59
Length of query: 302
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,254,100
Effective search space: 889106900
Effective search space used: 889106900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)