RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780959|ref|YP_003065372.1| putative hydrolase serine
protease transmembrane protein [Candidatus Liberibacter asiaticus str.
psy62]
(302 letters)
>gnl|CDD|162612 TIGR01932, hflC, HflC protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully
described.//Regulation of FtsH protease appears to be
negative (PubMed:8947034, PubMed:96367).
Length = 317
Score = 159 bits (404), Expect = 9e-40
Identities = 90/317 (28%), Positives = 155/317 (48%), Gaps = 40/317 (12%)
Query: 7 ISFFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKI------HATYREPGIYFKMPFSFMN 60
+ I LL+ + F FFI+ ++ I+TRFGKI H EPG++FK+PF
Sbjct: 3 KIGIVVIVLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPF---- 58
Query: 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRI-AAESR 119
++ VK +I ++ R+ + K +D + +RI D + S I AAE
Sbjct: 59 IEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAEVL 118
Query: 120 LRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDL----------RYDAEK------- 162
++ ++D +R G+ + + +++ V + K
Sbjct: 119 IKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAR 178
Query: 163 ------------LGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQK 210
+GI + DVR+ + + + E+S+ Y+RM++ER A R++G E+ ++
Sbjct: 179 EISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEE 238
Query: 211 RMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLA 270
+ A+ + +ILSEA R + I G+G+AE +I S+ + KDPEF+ F+RS+ AY S
Sbjct: 239 ILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSFK 298
Query: 271 SSDTFLVLSPDSDFFKY 287
+ VLS DS+FF+Y
Sbjct: 299 DNQDEKVLSTDSEFFQY 315
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional.
Length = 334
Score = 147 bits (373), Expect = 3e-36
Identities = 100/331 (30%), Positives = 165/331 (49%), Gaps = 53/331 (16%)
Query: 3 NKSCISFFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKI------HATYREPGIYFKMPF 56
KS I+ + + ++L + S F+V ++ IV RFGK+ PG++FK+PF
Sbjct: 2 RKSVIAIIIIVLVVL---YMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPF 58
Query: 57 SFMNVDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIA- 115
++ VK L +I ++ R + K VD+ + +RI D S + + I+
Sbjct: 59 ----IETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQ 114
Query: 116 AESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDL------------------- 156
AE L+ + +R G D ++ R ++ ++V + L
Sbjct: 115 AEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDA 174
Query: 157 ------RYDAEK--------------LGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAE 196
R +AE LGI + DVR+ + +L EVS Y+RM+AER A
Sbjct: 175 IASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAV 234
Query: 197 AEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFF 256
A R++G+EE +K + AD + T+ L+EA R I G+G+AE ++ ++ F +DP+F+
Sbjct: 235 ARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFY 294
Query: 257 EFYRSMRAYTDSLASSDTFLVLSPDSDFFKY 287
F RS+RAY +S + + +VLSPDSDFF+Y
Sbjct: 295 AFIRSLRAYENSFSGNQDVMVLSPDSDFFRY 325
>gnl|CDD|130988 TIGR01933, hflK, HflK protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully
described.//Regulation of FtsH by HflKC appears to be
negative (PubMed:8947034,PubMed:96367).
Length = 261
Score = 88.6 bits (220), Expect = 2e-18
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 15/235 (6%)
Query: 24 FFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQV 83
+ + ++ +V RFGK H T +PG+ +K PF ++ V + +R +
Sbjct: 1 IYTIGEAERGVVLRFGKYHRTV-DPGLNWKPPF----IEEVYPVNVTAVRNLRKQGLMLT 55
Query: 84 SDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSK 143
D V+ + YRI DP + SV E LR D+++R V G DD L++
Sbjct: 56 GDENIVNVEMNVQYRITDPYKYLFSVE----NPEDSLRQATDSALRGVIGDSTMDDILTE 111
Query: 144 QREKMMMEVCEDLR--YDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIR 201
R ++ + E L D LGI++ DV +EV ++ +D + R E +I
Sbjct: 112 GRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEV-KEAFDDVIIAREDEERYIN 170
Query: 202 ARGREEGQKRMSIADRKATQILSEAR--RDSEINYGKGEAERGRILSNVFQKDPE 254
+ + A A +I+ EAR ++ IN KG+ R L ++K P+
Sbjct: 171 -EAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPD 224
>gnl|CDD|128540 smart00244, PHB, prohibitin homologues. prohibitin homologues.
Length = 160
Score = 83.5 bits (207), Expect = 7e-17
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 22 SSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRV 81
++ +V + +V R G++ PG++F +PF +DRVK + + ++ +
Sbjct: 1 AAIKVVGEGEAGVVERLGRVLRVL-GPGLHFLIPF----IDRVKKVDLRAQTDDVPPQEI 55
Query: 82 QVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDAL 141
D VDA++ YR++DP V A + + ++R V G D+ L
Sbjct: 56 ITKDNVKVSVDAVVYYRVLDPLKAVYRV---LDADYAVIEQLAQTTLRSVIGKMTLDELL 112
Query: 142 SKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRM 189
+ +REK+ + E+L AE GI +EDV + L +E+ + +
Sbjct: 113 TDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQQ 160
>gnl|CDD|182847 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional.
Length = 419
Score = 47.5 bits (113), Expect = 4e-06
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 22 SSFFIVDARQQAIVTRFGKI-HATYREPGIYFKMPF----SFMNVDRVKYLQKQIMRLNL 76
S F+ + ++ +VTRFGK H EPG+ +K F +NV+ V+ L + L
Sbjct: 95 SGFYTIKEAERGVVTRFGKFSHLV--EPGLNWKPTFIDEVKPVNVEAVRELAASGVMLT- 151
Query: 77 DNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRR 136
SD V+ + YR+ DP + SV+ + + LR D+++R V G
Sbjct: 152 -------SDENVVRVEMNVQYRVTDPEKYLFSVT----SPDDSLRQATDSALRGVIGKYT 200
Query: 137 FDDALSKQ----REKMMMEVCEDLR-YDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKA 191
D L++ R E+ E +R YD +GI++ DV +EV + +D A
Sbjct: 201 MDRILTEGRTVIRSDTQRELEETIRPYD---MGITLLDVNFQAARPPEEV-KAAFDDAIA 256
Query: 192 ERLAEAEFIRARG--REEGQKRMSIADRKATQILSEAR--RDSEINYGKGEAER 241
R E ++IR E Q R A+ +A +IL EAR + I +GE R
Sbjct: 257 ARENEQQYIREAEAYTNEVQPR---ANGQAQRILEEARAYKAQTILEAQGEVAR 307
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 33.1 bits (75), Expect = 0.10
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 196 EAEFIRARGREEGQKRMSIADRKATQILSEARRDSEI----------NYGKGEAERGRIL 245
E F+ R E + M I+ R +LS ++E+ + G E GR L
Sbjct: 1051 ECMFLYKRENVERDQLMCISSRLLQMLLSSEIGNAEMLDYSVLPLSCDSGLIEKAEGREL 1110
Query: 246 SNVFQKDPEFFEFYRSMRAYTDSLASSDTFLVLS 279
SN+ D + YR R+ + LAS+ FL+L+
Sbjct: 1111 SNLDNMDIASYVLYRGTRSCINFLASAKLFLLLN 1144
>gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF.
Length = 514
Score = 29.5 bits (67), Expect = 0.98
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 205 REEGQKRMSIADRKATQILSEARRDSE 231
+ +K++ A+ A +I+ EA++++E
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAE 46
>gnl|CDD|180169 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil
reductase; Validated.
Length = 217
Score = 29.4 bits (67), Expect = 1.2
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 90 EVDAMM----TYRIIDPSLFCQSVSCD------RIAAESRLRTRLDASI 128
EVDA+M T DPSL + R+ +S RT DA I
Sbjct: 41 EVDAVMVGIGTVLADDPSLTVHRYAAGKPENPIRVVVDSSARTPPDARI 89
>gnl|CDD|179408 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 29.2 bits (66), Expect = 1.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 197 AEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAE 240
E IR R + + AD +A +I++EA D+E EAE
Sbjct: 7 VEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAE 50
Score = 27.7 bits (62), Expect = 3.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 195 AEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNV 248
A A IRA EE ++ ++ A+ A +IL + ++E + E R + LS+
Sbjct: 16 ARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAE---REIEQLREQELSSA 66
Score = 26.5 bits (59), Expect = 8.0
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 163 LGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQI 222
L +ED+R + ++ ++AE EAE I A + ++ + + +A +
Sbjct: 3 LETVVEDIR--------DEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAERE 54
Query: 223 LSEARRDSEINYGKGEAERGR------ILSNVFQK 251
+ E R+ E++ K EA+R R +L +V +
Sbjct: 55 I-EQLREQELSSAKLEAKRERLNARKEVLEDVRNQ 88
>gnl|CDD|161929 TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase. Alternate names:
phosphatidylglycerophosphate synthase; glycerophosphate
phosphatidyltransferase; PGP synthase. A number of
related enzymes are quite similar in both sequence and
catalytic activity, including Saccharamyces cerevisiae
YDL142c, now known to be a cardiolipin synthase. There
may be problems with incorrect transitive annotation of
near homologs as authentic
CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase.
Length = 182
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 17/52 (32%)
Query: 7 ISFFLFIFLLLGLS-FSSFFI-------------VD---ARQQAIVTRFGKI 41
+ F+ FL L S FI +D AR+ V+ FGK
Sbjct: 15 LPIFILFFLENVLPIQVSPFIGALLFIFAAVTDWLDGYLARKWNQVSNFGKF 66
>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.
Length = 445
Score = 28.9 bits (65), Expect = 1.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 170 VRVLRTDLTQEVSQQTYD-RMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARR 228
VR L V QQ + A+RLAEA+ + E+ A +A +++ EAR
Sbjct: 26 VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVED-------AKAEAARVVEEARE 78
Query: 229 DSE 231
D+E
Sbjct: 79 DAE 81
>gnl|CDD|162432 TIGR01578, MiaB-like-B, MiaB-like tRNA modifying enzyme,
archaeal-type. This clade is a member of a subfamily
(TIGR00089) and spans the archaea and eukaryotes. The
only archaeal miaB-like genes are in this clade, while
eukaryotes have sequences described by this model as
well as ones falling within the scope of the MiaB
equivalog model.
Length = 420
Score = 28.6 bits (64), Expect = 1.8
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 134 LRRFDDALSKQREKMMMEVCEDLRYDA-EKLGISIEDVRVLRT 175
++R + K+R K + ++ E + + + L + V V +
Sbjct: 333 MKRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHVLVTKE 375
>gnl|CDD|148509 pfam06934, CTI, Fatty acid cis/trans isomerase (CTI). This family
consists of several fatty acid cis/trans isomerase
proteins which appear to be found exclusively in
bacteria of the orders Vibrionales and Pseudomonadales.
Cis/trans isomerase (CTI) catalyses the cis-trans
isomerisation of esterified fatty acids in
phospholipids, mainly cis-oleic acid (C(16:1,9)) and
cis-vaccenic acid (C(18:1,11)), in response to solvents.
The CTI protein has been shown to be involved in solvent
resistance in Pseudomonas putida.
Length = 688
Score = 28.0 bits (63), Expect = 3.0
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 253 PEFFEFYRSMRAYTDSLASSDTFLVLSPDSDFFKYFDRFQERQKNYR 299
P F + ++++ D A D F + + F++Y D K +
Sbjct: 627 PAFVDALENLKSEADYEALVDRFGIRRSNPQFWQYSDDLHAWYKKTQ 673
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent.
Length = 1164
Score = 28.1 bits (63), Expect = 3.0
Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 12/125 (9%)
Query: 118 SRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDL 177
R +L+ R + L+R D L ++ +++ E+ DL + I ++ + D
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEEL-ADLNAAIAGIEAKINELEEEKEDK 446
Query: 178 TQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKG 237
E+ +Q + K E+LA + E + ++ + + + +
Sbjct: 447 ALEIKKQEW---KLEQLAA-----DLSKYEQELY---DLKEEYDRVEKELSKLQRELAEA 495
Query: 238 EAERG 242
EA+
Sbjct: 496 EAQAR 500
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 28.0 bits (62), Expect = 3.5
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 218 KATQILSEARRDSEINYGKG---------EAERGRILSNVFQKDPEFF----EFYRSMRA 264
K ILSE D +++GK ++ GR + K + EF + A
Sbjct: 2662 KDVAILSEV--DGIVSFGKPIRNKEHIIVTSKDGRSMDYFVDKGKQILVHADEFVHAGEA 2719
Query: 265 YTDSLASSDTFLVLSPDSDFFKYFDRFQERQKNYRKE 301
TD + SS L +S + + +KY E Q+ YR++
Sbjct: 2720 MTDGVVSSHDILRISGEKELYKYI--VSEVQQVYRRQ 2754
>gnl|CDD|165405 PHA03133, PHA03133, thymidine kinase; Provisional.
Length = 368
Score = 27.6 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 112 DRIAAESRLRTRLD----ASIRRVYGL 134
+R+A R RLD ++IRRVY +
Sbjct: 209 ERLAQRQRPGERLDLAMLSAIRRVYDM 235
>gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional.
Length = 257
Score = 27.3 bits (61), Expect = 4.6
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 155 DLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKA 191
LR +A + G+++ RV + DLT DR +A
Sbjct: 41 ALRAEAARRGLAL---RVEKLDLTDA-----IDRAQA 69
>gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 27.5 bits (62), Expect = 4.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 1 MSNKSCISFFLFIFLLLGLSFSSFFIV 27
M NK + FFL + LL+G+ ++S V
Sbjct: 1 MRNKRWVIFFLTLLLLIGIYYASPKFV 27
>gnl|CDD|180104 PRK05469, PRK05469, peptidase T; Provisional.
Length = 408
Score = 27.4 bits (62), Expect = 4.7
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 132 YGLRRFDDALSKQREKMMMEVCEDL--RYDAEKLGISIED 169
Y +R FD + R+ +M E+ + + +Y ++ + I+D
Sbjct: 278 YIIRDFDREGFEARKALMQEIAKKVNAKYGEGRVELEIKD 317
>gnl|CDD|182926 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 27.4 bits (61), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 6 CISFFLFIFLLLGLSFSSFFIVDARQQAIVT 36
C++FF F+ +LL L D RQ IVT
Sbjct: 421 CMAFFAFVLVLLTLE------DDTRQALIVT 445
>gnl|CDD|163456 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves.
Length = 893
Score = 27.3 bits (61), Expect = 5.3
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 159 DAEKLGISIEDVRVLRTD-LTQEVSQQTYDRMKAER----LAEAEFIRAR-----GREEG 208
DA +L + EDV+ L D L +E + + E L E E I AR G E+
Sbjct: 548 DAHRLLETPEDVKALDADELEEEDADDEDPDDEDEEQRDILGEME-IAARLMITGGEEKE 606
Query: 209 QKRMSIADRKATQ--ILSEARRDSE 231
RMS ADR + IL+ AR S
Sbjct: 607 DARMSRADRSLIRQAILAAARTASA 631
>gnl|CDD|152136 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autophagy is a
major survival survival mechanism in which eukaryotes
recycle cellular nutrients during stress conditions.
Atg22, Avt3 and Avt4 are partially redundant vacuolar
effluxes, which mediate the efflux of leucine and other
amino acids resulting from autophagy. This family also
includes other transporter proteins.
Length = 477
Score = 27.3 bits (61), Expect = 5.7
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 10 FLFIFLLLGLSFSSFFIVD---ARQQAI 34
FLF+ +L L +VD R++A
Sbjct: 450 FLFLAVLFVLGLPLLLLVDVEKGRREAA 477
>gnl|CDD|130572 TIGR01508, rib_reduct_arch,
2,
5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1'-reductase, archaeal. in riboflavin biosynthesis is
reduced first, and then deaminated, in both Archaea and
Fungi, opposite the order in Bacteria. The subsequent
deaminase is not presently known and is not closely
homologous to the deaminase domain (3.5.4.26) fused to
the reductase domain (1.1.1.193) similar to this protein
but found in most bacteria.
Length = 210
Score = 27.1 bits (60), Expect = 6.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 90 EVDAMM----TYRIIDPSLFCQSVSCD----RIAAESRLRTRLDASI 128
EVDA+M T DP L + + D R+ +S+LR L+A I
Sbjct: 39 EVDAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVDSKLRVPLNARI 85
>gnl|CDD|128350 smart00035, CLa, CLUSTERIN alpha chain.
Length = 216
Score = 27.0 bits (60), Expect = 6.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 106 CQ---SVSCDRI-AAESRLRTRLDASIRRVYGL-RRFDDALSKQREKMM 149
CQ SV C + +LR LD S++ +++D L ++KM+
Sbjct: 78 CQEILSVDCSTNNPDQPQLRQELDESLQLAERFTQQYDQLLQSYQKKML 126
>gnl|CDD|161996 TIGR00684, narJ, nitrate reductase molybdenum cofactor assembly
chaperone. This protein is termed NarJ in most species
that have a single copy, and has been called the delta
subunit of nitrate reductase. However, although it is
required for correct assembly of active enzyme, it
dissociates and is not part of the enzyme. Two hits to
this model are found each in E. coli and in
Mycobacterium tuberculosis, but in each case duplication
to create paralogs appears to be recent. The NarX
protein of Mycobacterium tuberculosis includes one of
these paralogs as a domain, fused to structural domains
of nitrate reductases before and after the
NarJ-homologous region.
Length = 152
Score = 26.7 bits (59), Expect = 7.1
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 159 DAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQ 209
DAE LG+ +E + L + +T+D + + ++ R GQ
Sbjct: 29 DAEALGLFMEFLEKLDPEAADAQYVETFDMGRKTSMYLTYLLKGEERMRGQ 79
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 26.8 bits (60), Expect = 7.5
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 131 VYGLRRF-DDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRM 189
Y R F L ++RE ++ + L+ E+L + + + + L Q +QQ +R+
Sbjct: 37 YYFGRGFLGKILEERREAIL----QALKEAEERLRQAAQALAEAQQKLAQ--AQQEAERI 90
Query: 190 KAERLAEAEFIRARGREEGQKRM------SIADRKATQ--ILSEARR 228
+A+ A AE IRA ++ + M + AD A Q ++++ RR
Sbjct: 91 RADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRR 137
>gnl|CDD|184002 PRK13363, PRK13363, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 335
Score = 26.7 bits (59), Expect = 7.7
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 185 TYDRMKAERLAE--AEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAE 240
TYD + AER E E I R E A + + AR D + G + E
Sbjct: 44 TYDALVAERAPENLEEQITPEERTERHAACEAAIERMRDAIEAARIDVAVIVGNDQME 101
>gnl|CDD|182174 PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA;
Provisional.
Length = 759
Score = 26.6 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 160 AEKLGISIEDVRVLRT--------DLTQEVSQQTY 186
AE +GI + DVRV+ T D S+Q+Y
Sbjct: 495 AETVGIPVSDVRVISTQDTDVTPFDPGAYASRQSY 529
>gnl|CDD|180718 PRK06834, PRK06834, hypothetical protein; Provisional.
Length = 488
Score = 26.5 bits (59), Expect = 9.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 171 RVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKR 211
RVLR + Q + DR +A R AE + G +E +KR
Sbjct: 325 RVLRNTMAQVALLRPDDRTEALRDIVAELL---GMDEPRKR 362
>gnl|CDD|179847 PRK04424, PRK04424, fatty acid biosynthesis transcriptional
regulator; Provisional.
Length = 185
Score = 26.3 bits (59), Expect = 9.8
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 10/49 (20%)
Query: 160 AEKLGISIEDVRVLRTDL--------TQEVSQQTYDRMKAERLAEAEFI 200
AEK G+SI+ +R+ R +L + V+++ YD++K+ L E E +
Sbjct: 28 AEKFGVSIQTIRLDRMELGIPELRERIKHVAEKNYDKVKS--LPEEEVV 74
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.326 0.138 0.388
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,034,424
Number of extensions: 332118
Number of successful extensions: 1260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1244
Number of HSP's successfully gapped: 64
Length of query: 302
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 209
Effective length of database: 3,984,929
Effective search space: 832850161
Effective search space used: 832850161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)