RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (302 letters) >1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} (A:) Length = 143 Score = 77.0 bits (189), Expect = 3e-15 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 6/140 (4%) Query: 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIA----- 115 + + +IM L V+ ++G V + +I+ + Sbjct: 4 GSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQD 63 Query: 116 AESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRT 175 ++ + L+ +R + G + + R++ V E D ++GI I + Sbjct: 64 IKNVVLQTLEGHLRSILGTLTVEQIY-QDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122 Query: 176 DLTQEVSQQTYDRMKAERLA 195 + + + Sbjct: 123 YDKVDYLSSLGKTQTSGPSS 142 >2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} (A:) Length = 113 Score = 68.0 bits (166), Expect = 1e-12 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 5/117 (4%) Query: 64 VKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTR 123 ++ + +++ V D VDA++ Y++IDP +VS + Sbjct: 2 SDHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVS----DFLMAIVKL 57 Query: 124 LDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180 ++R + G D+ LS R+ + + E+L ++ G+ I V + R D ++ Sbjct: 58 AQTNLRAIIGEMELDETLS-GRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 >3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} (A:1-114) Length = 114 Score = 64.2 bits (156), Expect = 2e-11 Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRL 120 ++ + + L++ D V+A++ +R++DP V Sbjct: 3 FEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQV----KNYIMAT 58 Query: 121 RTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDL 177 ++R V G D+ LS +R+K+ M++ + + GI + V + +L Sbjct: 59 SQISQTTLRSVIGQAHLDELLS-ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVEL 114 >2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* (B:462-606) Length = 145 Score = 31.0 bits (70), Expect = 0.20 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 160 AEKLGISIEDVRVLRTDLTQEV--------SQQTYDRMKAERLAEAEFIRARGREEGQKR 211 A LGI VR+ TD T +V S A + A E +R R R Sbjct: 40 AAVLGIDPVQVRITATD-TSKVPNTSATAASSGADMNGMAVKDA-CETLRGRLAGFVAAR 97 Query: 212 MSIA 215 A Sbjct: 98 EGCA 101 >1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} (B:482-633) Length = 152 Score = 27.6 bits (61), Expect = 1.9 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 7/62 (11%) Query: 160 AEKLGISIEDVRVL--RTDLTQEV----SQQTYDRMKAERLAEAEFIRARGREEGQKRMS 213 A+ LG+ DV + T T S+ + A A +R R ++ + Sbjct: 38 ADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRA-ASIVRERVKQLAGHLLE 96 Query: 214 IA 215 A Sbjct: 97 AA 98 >2jxp_A Putative lipoprotein B; uncharacterized lipoprotein B, structure, northeast structural genomics consortium, NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718} (A:) Length = 155 Score = 27.5 bits (61), Expect = 2.5 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 13/142 (9%) Query: 57 SFMNVDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAA 116 + + L++ I V+ + + +A++ S+S Sbjct: 21 APAGLTIGSDLERVIST---HTRAKVVNKAE--KSEAIIQIVHAIREKRILSLSESGRVR 75 Query: 117 ESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTD 176 E L R+ A + D ++ + + L + + + +L D Sbjct: 76 EFELVYRVAARLL--------DAHNAELASLQEIRLTRILPFLDAQELAKAAEEEMLYKD 127 Query: 177 LTQEVSQQTYDRMKAERLAEAE 198 + ++ QQ ++ A A E Sbjct: 128 MQKDAVQQILRQVSAFTSAGLE 149 >3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} (B:20-172) Length = 153 Score = 26.9 bits (59), Expect = 3.4 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%) Query: 160 AEKLGISIEDVRVLRTDLTQEV-------SQQTYDRMKAERLAEAEFIRARGREEGQKRM 212 AE+LG+ E + V D S+QT A LA + + +++ Sbjct: 39 AEELGLDYEKIHVTWGDTMVTPDGGATSASRQTLITGNAVILA-CRQAKETLAKTAAEKL 97 Query: 213 SIA 215 A Sbjct: 98 DCA 100 >2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, lyase; 1.65A {Pseudomonas pavonaceae} (A:) Length = 131 Score = 26.9 bits (59), Expect = 3.6 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 3/37 (8%) Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180 Q+ + L GIS +DV V + + Sbjct: 80 QKVCFYKLLTGAL---ERDCGISPDDVIVALVENSDA 113 >1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} (A:) Length = 128 Score = 26.8 bits (59), Expect = 4.0 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 3/37 (8%) Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180 +++++ + +L KLGI DV + + Sbjct: 74 TKKRLIKMLFSEL---EYKLGIRAHDVEITIKEQPAH 107 >2ppv_A Uncharacterized protein; NP_764104.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228} (A:) Length = 332 Score = 25.6 bits (56), Expect = 7.5 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 9/76 (11%) Query: 128 IRRVYGLRRFDDAL-------SKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180 + R G D + ++ + + + E+L +RVL E Sbjct: 237 LTRQVGEPFIDFVICSSESYSKDVLQRYEEKNSKPVAVHKEQL--KDSGIRVLTASNLVE 294 Query: 181 VSQQTYDRMKAERLAE 196 +S + Y R + L++ Sbjct: 295 ISNEHYVRHNTKVLSK 310 >1cza_N Hexokinase type I; structurally homologous domains; HET: GLC G6P ADP; 1.90A {Homo sapiens} (N:520-657,N:896-917) Length = 160 Score = 25.7 bits (56), Expect = 7.8 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 13/74 (17%) Query: 15 LLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRL 74 + LG +FS + I+ + K FK + D V L+ I R Sbjct: 77 MPLGFTFSFPCQQTSLDAGILITWTK----------GFKAT-DCVGHDVVTLLRDAIKRR 125 Query: 75 NLDNIRVQ--VSDG 86 ++ V V+DG Sbjct: 126 EEFDLDVVAVVNDG 139 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.138 0.388 Gapped Lambda K H 0.267 0.0517 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,299,394 Number of extensions: 106586 Number of successful extensions: 509 Number of sequences better than 10.0: 1 Number of HSP's gapped: 505 Number of HSP's successfully gapped: 31 Length of query: 302 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 214 Effective length of database: 1,981,209 Effective search space: 423978726 Effective search space used: 423978726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (25.1 bits)