RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (302 letters) >3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Score = 70.2 bits (171), Expect = 5e-13 Identities = 31/166 (18%), Positives = 67/166 (40%), Gaps = 9/166 (5%) Query: 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRL 120 ++ + + L++ D V+A++ +R++DP V Sbjct: 3 FEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNY----IMAT 58 Query: 121 RTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180 ++R V G D+ LS++ K+ M++ + + GI + V + +L Sbjct: 59 SQISQTTLRSVIGQAHLDELLSERD-KLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAG 117 Query: 181 VSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEA 226 + + + +AER A A E +++ + R+A +I+SE Sbjct: 118 MQKAMARQAEAERERRARITLA----EAERQAAEKLREAAEIISEH 159 >2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Score = 54.6 bits (131), Expect = 3e-08 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 5/112 (4%) Query: 69 KQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASI 128 + +++ V D VDA++ Y++IDP +VS D + A +L ++ Sbjct: 7 LREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVS-DFLMAIVKL---AQTNL 62 Query: 129 RRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180 R + G D+ LS R+ + + E+L ++ G+ I V + R D ++ Sbjct: 63 RAIIGEMELDETLS-GRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 43.8 bits (102), Expect = 5e-05 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 16/78 (20%) Query: 190 KAERLA-EAEFIRARGREEGQKRMSIADRKATQILSE-----ARRDSEINYGKGEAER-- 241 +A+RL E E IR + REE +KR+ D A++++ + A++D E + + ++E+ Sbjct: 76 QADRLTQEPESIR-KWREEQRKRLQELD-AASKVMEQEWREKAKKDLE-EWNQRQSEQVE 132 Query: 242 -----GRILSNVFQKDPE 254 RI F + P+ Sbjct: 133 KNKINNRIADKAFYQQPD 150 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 42.2 bits (99), Expect = 1e-04 Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 51/224 (22%) Query: 95 MTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQRE---KMM-- 149 +++ ++ L V S+L+ + + + DD + E K + Sbjct: 11 LSHGSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67 Query: 150 --MEVCEDLR-YDAEKLGISI----------EDVRVLRTDLTQEVSQQTYDRMKAERLAE 196 V + L + + D+ L L QE + Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN--------DTTLVKT 119 Query: 197 AEFIRA--RGREEGQKRMSIADRKATQILSEARRDSEIN-Y----GKGEAERGRILSNVF 249 E I+ R ++ A L A + G+G + + F Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNTD------DYF 170 Query: 250 QKDPEFFEFYRSMRAYTDSL--ASSDTFLVLSPDSD-FFKYFDR 290 + E + Y++ L S++T L + K F + Sbjct: 171 E---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211 Score = 36.8 bits (85), Expect = 0.006 Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 58/209 (27%) Query: 20 SFSSFFIVDARQQAIVTRF--G-KIHATY-R---EPGIY-------FKMPFSFM----NV 61 S+ SFF + ++AI F G + + Y P I +P S M N+ Sbjct: 288 SWESFF--VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNL 344 Query: 62 DRVKYLQKQIMRLN--L-DNIRVQVSDGKFYEVDAMMTYRIIDP--SL--FCQSVSCDRI 114 + + +Q + + N L +V++S V+ + P SL ++ + Sbjct: 345 TQ-EQVQDYVNKTNSHLPAGKQVEIS-----LVNGAKNLVVSGPPQSLYGLNLTL--RKA 396 Query: 115 AAESRL-RTRLDASIRRVYGLRRF------------DDALSKQREKMMMEVCEDLRYDAE 161 A S L ++R+ S R++ RF A + + V ++ ++A+ Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL---VKNNVSFNAK 453 Query: 162 KLGISI------EDVRVLRTDLTQEVSQQ 184 + I + D+RVL +++ + Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDC 482 Score = 31.8 bits (72), Expect = 0.20 Identities = 17/157 (10%), Positives = 44/157 (28%), Gaps = 36/157 (22%) Query: 172 VLRTDLTQEVSQQT----YD---RMKAERLAEA-EFIRARGREEGQKRMSIADRKATQIL 223 L+ + + + T D AE + + ++ + + Q+L Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF-------DQVL 84 Query: 224 SEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLASSDTFLVLSPDSD 283 + + E Y +G + + D + ++ Y + + +S Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144 Query: 284 FFK---------------------YFDRFQERQKNYR 299 F+ YF+ ++ + Y Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181 Score = 31.5 bits (71), Expect = 0.22 Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 17/67 (25%) Query: 243 RILSNVFQ-KDPEFFEFYRSMRAYTDSLASSDTF-----LVLSPDSDFFKYF--DRFQER 294 Q ++ +F + + T+ A+ D LV F + + Sbjct: 25 ASFFIASQLQE----QFNKILPEPTEGFAADDEPTTPAELVGK-----FLGYVSSLVEPS 75 Query: 295 QKNYRKE 301 + + Sbjct: 76 KVGQFDQ 82 Score = 29.5 bits (66), Expect = 0.94 Identities = 51/352 (14%), Positives = 93/352 (26%), Gaps = 161/352 (45%) Query: 22 SSFFIVDARQQA-IVTRFG-------------KIHATYREPGIYFKMPFSFMNVDR-VKY 66 S+ F A +V FG ++ TY V +K+ Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH--------VL----VGDLIKF 190 Query: 67 LQKQIMRLNLDNIRVQVSDGKFY----EVDAMMTYRIIDP----------SL-------F 105 + + L + + K + + + P S Sbjct: 191 SAETLSELIRTTLDAE----KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246 Query: 106 CQ-SVSCDRIAAES--RLRTRLDASIRRVYGL------------RRFDDALSKQREKMMM 150 V+ ++ + LR+ L + GL F ++ + + Sbjct: 247 AHYVVTA-KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-----RKAI 300 Query: 151 EVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQK 210 V L + +G VR + Y L + I E + Sbjct: 301 TV---LFF----IG-----VR----------CYEAYPNTS---LPPS--ILEDSLENNEG 333 Query: 211 R---M-SIAD--RKATQ--I------LSEARRD--SEIN--------------YG----- 235 M SI++ ++ Q + L ++ S +N YG Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393 Query: 236 -KGEAERG----RILSNVF-QKDPEFFEFYRSMRAYTDSLASSDTFLVLS-P 280 K +A G RI F ++ +F S R FL ++ P Sbjct: 394 RKAKAPSGLDQSRIP---FSERKLKF-----SNR-----------FLPVASP 426 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.4 bits (80), Expect = 0.018 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 13/39 (33%) Query: 117 ESR-LRTRLDASIRRVYGLRRFDD---ALSKQREKMMME 151 E + L+ +L AS+ ++Y DD AL+ K ME Sbjct: 18 EKQALK-KLQASL-KLYA----DDSAPALAI---KATME 47 >3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl, structural genomics; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Length = 155 Score = 34.2 bits (78), Expect = 0.039 Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 11/106 (10%) Query: 143 KQREKMMMEVCEDLRYDAEKLGISIEDVRVLR---TDLTQEVSQQTYD----RMKAERLA 195 Q M ++ DL Y AE I +R TD Q + A Sbjct: 16 TQGPGSMSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTA 75 Query: 196 EAEFIRARGREEGQKRMSIADRKATQILSEARRDSE-IN---YGKG 237 F + + K +++ S+ + +N YG G Sbjct: 76 GETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAG 121 >2ppv_A Uncharacterized protein; NP_764104.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228} Length = 332 Score = 31.9 bits (72), Expect = 0.18 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 18/119 (15%) Query: 90 EVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFD----------- 138 + + ++ ++ +DA + R G D Sbjct: 200 GISEALLRTSAPKLYVSNVMTQPGETDNYDVKEHIDA-LTRQVGEPFIDFVICSSESYSK 258 Query: 139 DALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEA 197 D L + EK V + + GI RVL E+S + Y R + L++ Sbjct: 259 DVLQRYEEKNSKPVAVH-KEQLKDSGI-----RVLTASNLVEISNEHYVRHNTKVLSKM 311 >1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 Length = 907 Score = 29.9 bits (67), Expect = 0.71 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 160 AEKLGISIEDVRVLRTDLTQEV--------SQQTYDRMKAERLAEAEFIRARGREEGQKR 211 LGI+ E++ ++ D T + S+ A R+A E + R+ G Sbjct: 671 LRPLGITPENIHLVMND-TSKTPNSGPAGGSRSQVVTGNAIRVA-CEMLIEGMRKPGGGF 728 Query: 212 MSIADRKA 219 + A+ KA Sbjct: 729 FTPAEMKA 736 >1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A* Length = 1332 Score = 29.3 bits (65), Expect = 1.0 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 160 AEKLGISIEDVRVLRTDLTQEV--------SQQTYDRMKAERLAEAEFIRARGREEGQKR 211 ++ L I I + + T T V S T +A A + I R +K Sbjct: 1051 SKALKIPISKIYISETS-TNTVPNSSPTAASVSTDIYGQAVYEA-CQTILKRLEPFKKKN 1108 Query: 212 MSIA 215 + Sbjct: 1109 PDGS 1112 >1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Length = 449 Score = 28.4 bits (63), Expect = 1.9 Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 8/109 (7%) Query: 173 LRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQI--LSEAR-RD 229 + TD + + Q ++ E A I R + Q+ R Sbjct: 32 IDTDFYKLLMLQMIWKLYPEVDATFSLIN-RTKTVRLAEEIDEMELREQLDHARTLRLSK 90 Query: 230 SEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLASSDTFLVL 278 E + G +PEF + S + L D L Sbjct: 91 KENIWLAGN----TFYGRSQIFEPEFLSWLSSYQLPEYELFKRDGQYEL 135 >1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure initiative, PSI; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30 Length = 199 Score = 28.0 bits (62), Expect = 3.1 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 19/135 (14%) Query: 112 DRIAAESRLRTRLDAS--IRRVYGLRRFDDALSKQREKMMM----EVCEDLRYDAEKLGI 165 +R E + + +Y RF D + + + E+ + A +GI Sbjct: 59 ERYMIECKFHNIPVYTGLKEAMYTYARFLDVEKHGFTQPWIFTNTKFSEEAKKYAGCVGI 118 Query: 166 SIEDVRVLRTDLTQ---------EVSQQTYDRMKAERLAEAEFIRAR----GREEGQKRM 212 + + + ++ D+ + L A + R EE + + Sbjct: 119 KLTGWSYPEKEGIEVLLESKGLYPITILRIDKEVLDELVRAGLVFCRDVVSAGEEKLREI 178 Query: 213 SIADRKATQILSEAR 227 ++ +KA ++++EA+ Sbjct: 179 GLSAKKAREVIAEAK 193 >2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; HET: NAD 1PE; 2.15A {Escherichia coli K12} Length = 385 Score = 27.4 bits (60), Expect = 4.0 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 9/91 (9%) Query: 95 MTYRIIDPSLFCQSVSCDRIAA-ESRLRTRLDASIRRVY--GLRRFDDALSKQREK---- 147 MT II+P LF + A ++ + + G ++R+K Sbjct: 294 MTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEV--NTRRERQKQGIP 351 Query: 148 MMMEVCEDLRYDAEKLGISIEDVRVLRTDLT 178 + + + A ++G+ E ++ L Sbjct: 352 LDAGSWQAICDAARQIGMPEETLQAFCQQLA 382 >2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.85A {Pyrococcus horikoshii OT3} SCOP: d.81.4.1 PDB: 2dma_A Length = 198 Score = 27.3 bits (60), Expect = 4.6 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 183 QQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERG 242 + + E + E+I R++ +K A R A R ++ + E E+ Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKT---QAELEKQ 61 Query: 243 RILSNVFQKD 252 RI++N + Sbjct: 62 RIIANARLEV 71 >1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A* Length = 219 Score = 26.5 bits (57), Expect = 8.7 Identities = 7/27 (25%), Positives = 13/27 (48%) Query: 181 VSQQTYDRMKAERLAEAEFIRARGREE 207 VS + E + + EF+ +G +E Sbjct: 179 VSAMVAQYVPDEEIIKREFLELKGIDE 205 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.138 0.388 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,603,422 Number of extensions: 123433 Number of successful extensions: 560 Number of sequences better than 10.0: 1 Number of HSP's gapped: 554 Number of HSP's successfully gapped: 35 Length of query: 302 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 210 Effective length of database: 3,462,782 Effective search space: 727184220 Effective search space used: 727184220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (26.0 bits)