HHsearch alignment for GI: 254780960 and conserved domain: TIGR01428
>TIGR01428 HAD_type_II haloacid dehalogenase, type II; InterPro: IPR006328 These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids . They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterised, but clearly utilise a substantially different catalytic mechanism and are thus unlikely to be related.; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds, 0008152 metabolic process.
Probab=97.60 E-value=0.00086 Score=42.00 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=113.2
Q ss_pred CEEEECCCEEEEECCCCHHHH-HHHHCC--CHHHH----------HHHHHHH----CCCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf 448722750265245200278-874122--32778----------8876520----24410012345568764200456-
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELA-DLIGIK--EKVSL----------ITARAMN----GEIPFQDSLRERISLFKGTSTKI- 142 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a-~~~~~~--~~~~~----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 142 (297)
T Consensus 2 ~a~vFD~yGTL~D~~s~~~~~~~~~~~~G~~~~~~lWR~~~l~y~~~~~~mg~~w~~y~df~~~~~~al~~~~~~~~~~~ 81 (207)
T TIGR01428 2 KALVFDVYGTLVDVHSVVERFAELFGGRGLEALSQLWRQKQLEYSWLRTLMGQNWTPYKDFWDLTAEALRYLLGRLGLAS 81 (207)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 55774164357658999999885158534899999999988889888762588888888889999999999997558776
Q ss_pred ---------HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC--CCHHHHHCCCCHHHCCCCCCC
Q ss_conf ---------898874211345433899999984198699981672342232265508--641343101000000000015
Q gi|254780960|r 143 ---------IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG--FDQYYANRFIEKDDRLTGQVM 211 (297)
Q Consensus 143 ---------~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lg--i~~~~a~~~~~~~~~~~~~~~ 211 (297)
T Consensus 82 ~~~~~~~~~L~~~~-~~L~p~pD~~~gL~~L~~~G~~l~iLSNg~~~~~~~~~~~aGvdL~~~Fd~~lS~d~~~~----- 155 (207)
T TIGR01428 82 TLDEAAADRLAEAY-LRLPPHPDVPAGLRALKERGLRLAILSNGSPAMLKSLVKHAGVDLDLPFDAVLSADAVRA----- 155 (207)
T ss_pred CCCHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----
T ss_conf 78988899998776-358998661889999976432365214898678999999628875300001014131235-----
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 6310521138877532331037766799997892348899848931898
Q gi|254780960|r 212 EPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 212 ~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
T Consensus 156 -YKP----~P~vY~~~~~~lg~~p~ev~~Vasn~wD~~GA~~~G~~~~w 199 (207)
T TIGR01428 156 -YKP----APQVYQLALEALGVPPEEVLFVASNAWDLGGAKKFGFKTAW 199 (207)
T ss_pred -CCC----CHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHCCCCEEE
T ss_conf -588----77888888876368787821101475678999776966688