RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB
[Candidatus Liberibacter asiaticus str. psy62]
(297 letters)
>gnl|CDD|30906 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 213 bits (544), Expect = 4e-56
Identities = 89/210 (42%), Positives = 126/210 (60%)
Query: 78 RRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKG 137
R K L + D+D T+I E IDELA G+ E+V IT RAM GE+ F++SLR R++L KG
Sbjct: 3 RMKKLAVFDLDGTLINAELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKG 62
Query: 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYAN 197
++++ + E+ + PG ELV +K GA ++++GGF+ IA+ LG D AN
Sbjct: 63 LPVEVLEEVREEFLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVAN 122
Query: 198 RFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG 257
D +LTG+V+ PI DG K++ L E +L I E+T+A GD NDL ML AG
Sbjct: 123 ELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPLEETVAYGDSANDLPMLEAAGLP 182
Query: 258 VAFHAKPALAKQAKIRIDHSDLEALLYIQG 287
+A + KP L A +RI DL A+LY+ G
Sbjct: 183 IAVNPKPKLRALADVRIWPIDLRAVLYLLG 212
>gnl|CDD|36828 KOG1615, KOG1615, KOG1615, Phosphoserine phosphatase [Amino acid
transport and metabolism].
Length = 227
Score = 156 bits (395), Expect = 9e-39
Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Query: 78 RRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKG 137
R + + D+DST+I++E IDELA G+ E V+ +T RAMNGE FQ++L R+SL +
Sbjct: 14 RSADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQP 73
Query: 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD--QYY 195
++ ++++K T PG ELV + G L++GGF +A+ LG Y
Sbjct: 74 LQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIY 133
Query: 196 ANRFIEKDD--RLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRV 253
AN + D L EP D K++++ + N + + VGDG DL+ +
Sbjct: 134 ANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNY--NYKTIVMVGDGATDLEAMPP 191
Query: 254 AGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDE 292
A AF + ++ + Y+ G DE
Sbjct: 192 A---DAFIGFGGNVIREGVKANAKWYVTDFYVLGGDLDE 227
>gnl|CDD|144342 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family are structurally different from the alpha/ beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of (S)-2-haloacid
dehalogenase from Pseudomonas sp. CBS3. The rest of the
fold is composed of the core alpha/beta domain.
Length = 190
Score = 60.0 bits (145), Expect = 8e-10
Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 34/199 (17%)
Query: 81 NLLIADMDSTMIEQ-----ECIDELADLIGIKEKVSL-----ITARAMNGEIPFQDSLRE 130
++ D D T+ + E I E A +G+ + L + R + G
Sbjct: 2 KAVVFDKDGTLTDGEPPIAEAIVEAAAELGLPLLLPLEEVEKLLGRGVEGIERILLEGGL 61
Query: 131 RISLFKGTSTKIIDS--------------LLEKKITYNPGGYELVHTMKQNGASTLLVTG 176
L ++ L+ PG E + +K+ G ++T
Sbjct: 62 TAELLLELEGELAAGKTAVLVALDGEVLGLIALADKLYPGAREALKALKERGIKVAILTN 121
Query: 177 GFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPE 236
G A + + LG I D + +P +I L+A+++L + PE
Sbjct: 122 GDRANAEAVLEALGLADL--FDVIVDSDDVGPVKPKP--------EIFLKALERLGVKPE 171
Query: 237 DTIAVGDGNNDLDMLRVAG 255
+ + VGDG ND L AG
Sbjct: 172 EVLMVGDGVNDAPALAAAG 190
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases..
Length = 139
Score = 57.0 bits (138), Expect = 6e-09
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 16/136 (11%)
Query: 137 GT---STKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ 193
GT S I + E ++ PG E + +K+ G L T + + LG D
Sbjct: 8 GTLLDSEPGIAEIEELELY--PGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD 65
Query: 194 Y--------YANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGN 245
Y A + K+ G P G LL A++ L ++PE+ + VGD
Sbjct: 66 YFDPVITSNGAAIYYPKEGLFLGG--GPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSL 123
Query: 246 NDLDMLRVAG-YGVAF 260
ND++M + AG GVA
Sbjct: 124 NDIEMAKAAGGLGVAV 139
>gnl|CDD|30907 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 51.3 bits (122), Expect = 3e-07
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 217 GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQAKIRID 275
G +K L + L I E+ IA GD ND++ML VAG GVA A L + A
Sbjct: 187 GVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKELADYVTT 246
Query: 276 HSDLEALLYI 285
+D + +
Sbjct: 247 SNDEDGVAEA 256
>gnl|CDD|32399 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 50.2 bits (120), Expect = 7e-07
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 22/132 (16%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
P E + +K G +++TG A IA+ LG D+ A E
Sbjct: 540 PDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELLPEDK----------- 588
Query: 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQ-AKIR 273
E +++LQ VGDG ND L A G+A + +A + A +
Sbjct: 589 ----------AEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVV 638
Query: 274 IDHSDLEALLYI 285
+ DL A+
Sbjct: 639 LMRDDLSAVPEA 650
>gnl|CDD|30892 COG0546, Gph, Predicted phosphatases [General function prediction
only].
Length = 220
Score = 48.6 bits (115), Expect = 2e-06
Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 21/194 (10%)
Query: 98 DELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGG 157
+E+ LIG+ + E + + F ++++S L PG
Sbjct: 41 EEIRQLIGLGLDELIERLLGEADEEAAAELVERLREEFLTAYAELLESRLF------PGV 94
Query: 158 YELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG 217
EL+ +K G +VT + + LG Y+ D +P +
Sbjct: 95 KELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVP----PPKPDPEP 150
Query: 218 TAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY---GVAFHAKPA--LAKQAKI 272
LL ++KL ++PE+ + VGD ND+ + AG GV + LA+
Sbjct: 151 ------LLLLLEKLGLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGAD 204
Query: 273 RIDHSDLEALLYIQ 286
+ S E L +
Sbjct: 205 VVIDSLAELLALLA 218
>gnl|CDD|35428 KOG0207, KOG0207, KOG0207, Cation transport ATPase [Inorganic ion
transport and metabolism].
Length = 951
Score = 48.0 bits (114), Expect = 3e-06
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 21/116 (18%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
P V +K G +++TG AR +AQ +G D YA
Sbjct: 726 PDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDNVYAE----------------- 768
Query: 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQA 270
+ E I+++Q N VGDG ND L A G+A A +A +A
Sbjct: 769 ----VLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEA 820
>gnl|CDD|34074 COG4359, COG4359, Uncharacterized conserved protein [Function
unknown].
Length = 220
Score = 43.0 bits (101), Expect = 9e-05
Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%)
Query: 79 RKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGT 138
+K ++ +D D T+ + D + D G + + ++ I F+D +
Sbjct: 2 KKPVIFSDFDGTITLNDSNDYITDTFG-PGEWKALKDGVLSKTISFRDGFGRMFGSI-HS 59
Query: 139 STKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFAR-FIAQHLGFDQYYAN 197
S + I L K I +PG E V +K++ ++V+ G F +G ++ Y
Sbjct: 60 SLEEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCI 119
Query: 198 RFIEKDDRLTGQVMEPIID------GTAKSQILLEAIQKLQINPEDTIAVGDGNNDL 248
+ +D + I G KS + I +L E GD +DL
Sbjct: 120 DIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSV----IHELSEPNESIFYCGDSVSDL 172
>gnl|CDD|32398 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 41.7 bits (98), Expect = 2e-04
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 27/167 (16%)
Query: 115 ARAMNGEIP-FQDSLRERISLFKGTSTKIIDS-----LLEKKITYNPGGYELVHTMKQNG 168
R G IP D+ + +S GT ++++ ++ K PG E +++ G
Sbjct: 404 VRERGGHIPEDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMG 463
Query: 169 ASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAI 228
T+++TG + A IA G D + A A + L I
Sbjct: 464 IKTVMITGDNPLTAAAIAAEAGVDDFIAE---------------------ATPEDKLALI 502
Query: 229 QKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRID 275
++ Q GDG ND L A GVA ++ AK+A +D
Sbjct: 503 RQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVD 549
>gnl|CDD|30982 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General
function prediction only].
Length = 221
Score = 39.7 bits (92), Expect = 0.001
Identities = 42/215 (19%), Positives = 72/215 (33%), Gaps = 26/215 (12%)
Query: 82 LLIADMDSTMIEQE-----CIDELADLIGIKEKVSLI-------TARAMNGEIPFQDSLR 129
+I DMD T+++ E E GI+ I AR ++
Sbjct: 4 AVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGED 63
Query: 130 ERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHL 189
++L + + PG EL+ +K G + + A + L
Sbjct: 64 PADLAELERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL 123
Query: 190 GFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLD 249
G Y+ D +T + + G I L A ++L ++PE+ + V D +
Sbjct: 124 GLLDYF-------DVIVTA---DDVARGKPAPDIYLLAAERLGVDPEECVVVEDSPAGIQ 173
Query: 250 MLRVAG----YGVAFHAKPALAKQAKIRIDHSDLE 280
+ AG A H +P L D L+
Sbjct: 174 AAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLD 208
>gnl|CDD|35431 KOG0210, KOG0210, KOG0210, P-type ATPase [Inorganic ion transport
and metabolism].
Length = 1051
Score = 36.1 bits (83), Expect = 0.012
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 193 QYYANRFIEKDDRLTGQVM---EPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLD 249
+YY + FIE L V P T K+Q++ +K A+GDG ND+
Sbjct: 743 KYYEDEFIELVCELPAVVCCRCTP----TQKAQVVRLLQKKTGKR---VCAIGDGGNDVS 795
Query: 250 MLRVAGYGVAFHAKPALAKQAKIRIDHS 277
M++ A G+ K KQA + D S
Sbjct: 796 MIQAADVGIGIVGKE--GKQASLAADFS 821
>gnl|CDD|30822 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 35.7 bits (82), Expect = 0.017
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 18/118 (15%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
E + +++ G ++TG A IA+ G + E + G ++ +
Sbjct: 550 EDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEA-----EAESALVIDGAELDAL 604
Query: 215 IDGTAKSQILLEAI-------QKLQI------NPEDTIAVGDGNNDLDMLRVAGYGVA 259
D + ++ QK +I + GDG ND L+ A G+A
Sbjct: 605 SDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIA 662
>gnl|CDD|38330 KOG3120, KOG3120, KOG3120, Predicted haloacid dehalogenase-like
hydrolase [General function prediction only].
Length = 256
Score = 33.8 bits (77), Expect = 0.065
Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 21/203 (10%)
Query: 76 ENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLF 135
+ + LL+ D D T+I+Q+ + + D + + + + G F + L +R+
Sbjct: 9 SSSPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKG---FWNELMDRVFKE 65
Query: 136 KGTSTKIIDSLLE--KKITYNPGGYELVHTMKQNGASTL-LVTGGFSIFARFIAQHLGFD 192
I + + + I PG L+ + + G L +V+ S F I + G
Sbjct: 66 LHEQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH 125
Query: 193 QYYANRF-----IEKDDRLTGQVMEPIID------GTAKSQILLEAIQKL---QINPEDT 238
++ F ++ RL + K +L E + + E
Sbjct: 126 DLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERL 185
Query: 239 IAVGDGNNDL-DMLRVAGYGVAF 260
I VGDG ND +LR+ VA
Sbjct: 186 IYVGDGANDFCPVLRLRACDVAM 208
>gnl|CDD|31964 COG1778, COG1778, Low specificity phosphatase (HAD superfamily)
[General function prediction only].
Length = 170
Score = 33.2 bits (76), Expect = 0.084
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 220 KSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA-FHAKPALAKQA 270
K E ++KL ++PE+ VGD DL ++ G VA A P L ++A
Sbjct: 84 KLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAVADAHPLLKQRA 135
>gnl|CDD|33789 COG4030, COG4030, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 315
Score = 33.1 bits (75), Expect = 0.097
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 217 GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVA----GYGVAFHAKPALAKQAKI 272
G + ++E +L+ + VGD D+ ML A G VAF+ K+A +
Sbjct: 188 GGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGNEYALKEADV 247
Query: 273 RIDHSDLEALLYI 285
+ A +
Sbjct: 248 AVISPTAMAEAPV 260
>gnl|CDD|147342 pfam05116, S6PP, Sucrose-6F-phosphate phosphohydrolase. This
family consists of Sucrose-6F-phosphate phosphohydrolase
proteins found in plants and cyanobacteria.
Sucrose-6(F)-phosphate phosphohydrolase catalyses the
final step in the pathway of sucrose biosynthesis.
Length = 247
Score = 32.6 bits (75), Expect = 0.13
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 217 GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGV 258
+K Q L +K + PE+T+ GD ND ++ GV
Sbjct: 163 RASKGQALRYLAKKWGLPPENTLVCGDSGNDAELFIGGVRGV 204
>gnl|CDD|35427 KOG0206, KOG0206, KOG0206, P-type ATPase [General function
prediction only].
Length = 1151
Score = 31.8 bits (72), Expect = 0.25
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 238 TIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHS-----DLEALLYIQG 287
T+A+GDG ND+ M++ A GV + + QA + D + LE LL + G
Sbjct: 797 TLAIGDGANDVSMIQEAHVGVGISGQEGM--QAVMSSDFAIAQFRFLERLLLVHG 849
>gnl|CDD|33844 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 30.3 bits (68), Expect = 0.60
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 199 FIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGV 258
+ + G +E + G A ++ + I++L+ E + VG+G ND+ LR A G+
Sbjct: 58 SLVQLAEFVGIPVERVFAG-ADPEMKAKIIRELKKRYEKVVMVGNGANDILALREADLGI 116
>gnl|CDD|111165 pfam02241, MCR_beta, Methyl-coenzyme M reductase beta subunit,
C-terminal domain. Methyl-coenzyme M reductase (MCR) is
the enzyme responsible for microbial formation of
methane. It is a hexamer composed of 2 alpha
(pfam02249), 2 beta (this family), and 2 gamma
(pfam2240) subunits with two identical nickel porphinoid
active sites. The C-terminal domain of MCR beta has an
all-alpha fold with buried central helix.
Length = 255
Score = 29.4 bits (66), Expect = 1.2
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 79 RKNLLIADMDSTMIEQECIDELADLIGIKEKVSLI--TARAMNGEIPFQDSLRERISLFK 136
RKN + A S+++EQ + E+ D +G E++ L+ + +N + D ++ +
Sbjct: 17 RKNTMNAVALSSILEQTAMFEMGDAVGAFERLHLLGLAYQGLNADNLVFDLVKANGK--E 74
Query: 137 GTSTKIIDSLLEKKI 151
GT ++ S++E+ +
Sbjct: 75 GTVGTVVASVVERAL 89
>gnl|CDD|37680 KOG2469, KOG2469, KOG2469, IMP-GMP specific 5'-nucleotidase
[Nucleotide transport and metabolism].
Length = 424
Score = 29.2 bits (65), Expect = 1.3
Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 55 HRSKILS---IIADKPIDLIIHRHENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVS 111
H ++ LS I L+ + M + + +D L + G +
Sbjct: 104 HGTRFLSNEEISEIYGRKLVRLSDSRYYLLNTLFSMPEADLFAQAVDFLDN--GPEYGPV 161
Query: 112 LITARAMNGEIPFQDSLRERISL--FKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGA 169
+ + ++D +R + G K + E+ + Y+ L+ ++ +G
Sbjct: 162 DMDYKPG-----WKD-VRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGK 215
Query: 170 STLLVTGGFSIFA-RFIAQHLGFD 192
T L T + F+A H GFD
Sbjct: 216 KTFLHTNSDWDYTDIFMAFHYGFD 239
>gnl|CDD|35423 KOG0202, KOG0202, KOG0202, Ca2+ transporting ATPase [Inorganic ion
transport and metabolism].
Length = 972
Score = 28.7 bits (64), Expect = 2.0
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
P + + +Q G +++TG A IA+ +G ++ LTG + +
Sbjct: 587 PEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGI---FSEDEDVSSMALTGSEFDDL 643
Query: 215 IDGT---AKSQIL----------LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
D A ++L L+ ++ LQ E GDG ND L+ A G+A
Sbjct: 644 SDEELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIA 701
>gnl|CDD|38295 KOG3085, KOG3085, KOG3085, Predicted hydrolase (HAD superfamily)
[General function prediction only].
Length = 237
Score = 28.4 bits (63), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 222 QILLEAIQKLQINPEDTIAVGD-GNNDLDMLRVAG 255
+I A+++L + PE+ + +GD ND + R G
Sbjct: 172 RIFQLALERLGVKPEECVHIGDLLENDYEGARNLG 206
>gnl|CDD|35430 KOG0209, KOG0209, KOG0209, P-type ATPase [Inorganic ion transport
and metabolism].
Length = 1160
Score = 28.0 bits (62), Expect = 2.9
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 228 IQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEA 281
I L+ T+ GDG ND+ L+ A GVA P +K+ K + L+
Sbjct: 799 ITTLKKLGYVTLMCGDGTNDVGALKQAHVGVALLNNPEESKKDKEKRRKKKLKL 852
>gnl|CDD|33812 COG4054, McrB, Methyl coenzyme M reductase, beta subunit [Coenzyme
metabolism].
Length = 447
Score = 26.5 bits (58), Expect = 9.1
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 79 RKNLLIADMDSTMIEQECIDELADLIGIKEKVSLI--TARAMNGEIPFQDSLRERISLFK 136
RKN + A S+++EQ + E+ D +G E++ L+ + +N D ++E
Sbjct: 208 RKNTMNAVALSSILEQTAMFEMGDAVGAFERLHLLGLAYQGLNANNLVYDLVKENGK--D 265
Query: 137 GTSTKIIDSLLEKKI 151
GT +I S++E+ +
Sbjct: 266 GTVGTVIASVVERAL 280
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.139 0.390
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,503,451
Number of extensions: 187812
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 38
Length of query: 297
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,254,100
Effective search space: 867836400
Effective search space used: 867836400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)