HHsearch results for GI: 254780961 and protein with PDBid: 3n1f_A
>3n1f_A Indian hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3n1m_B 3n1o_A 3n1p_B 3d1m_A 3m1n_A 3mxw_A 3ho5_H 1vhh_A 2wg4_A 2wfx_A 3n1r_A 2wfq_A 2wfr_A 2wg3_A*
Probab=96.93 E-value=0.0058 Score=36.90 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=69.0
Q ss_pred HHCCC-CCCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 72654-27985367889999999999980-----9988789951368856768986217888766731112899898289
Q gi|254780961|r 91 LLYDW-HSKQSIDMDPQLFDFLWEIQQYF-----SVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPG 164 (200)
Q Consensus 91 ~lRD~-R~~~~~~mDp~lld~L~~i~~~~-----g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g 164 (200)
+|+|. .++.-.-|-.++-+.|..+.... |. -++|+-++-...+ -+.+|+|-.|+|+||...+
T Consensus 66 iF~dEe~tgadR~MtkRck~kLn~La~~VmnqWpgV--kLrVteaWDed~~----------h~~~SLHYEGRAvdIttSD 133 (169)
T 3n1f_A 66 IFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV--KLRVTEGWDEDGH----------HSEESLHYEGRAVDITTSD 133 (169)
T ss_dssp EECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCCSCC----------SCTTCGGGGTCEEEEEETT
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECCCCC----------CCCCCCCCCCEEEEEEECC
T ss_conf 776766766037887999999999999999867980--8999861068888----------7865313056356788255
Q ss_pred CCHHH---HHHHHHHCCCCEEEEE-CCEEEEECCC
Q ss_conf 99999---9999996399847873-8846886698
Q gi|254780961|r 165 VSLRS---LYKIAIRLKRGGVGYY-SKFLHIDVGR 195 (200)
Q Consensus 165 ~~~~~---l~~~a~~~~~gGvG~Y-s~FVHiD~gp 195 (200)
.+..+ |++.|.+.++-=|-|- .++||+-+-+
T Consensus 134 rdrskyg~LArLAVeAGFDWV~Yesr~hiHcSVks 168 (169)
T 3n1f_A 134 RDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKS 168 (169)
T ss_dssp CCGGGHHHHHHHHHHTTCSEEEEEETTEEEEECCC
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEC
T ss_conf 76420068999998718876997365259998737