HHsearch results for GI: 254780961 and protein with PDBid: 3n1g_B
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} PDB: 3n1q_B
Probab=96.22 E-value=0.026 Score=33.00 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHH-----HCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH--
Q ss_conf 798536788999999999998-----0998878995136885676898621788876673111289989828999999--
Q gi|254780961|r 97 SKQSIDMDPQLFDFLWEIQQY-----FSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS-- 169 (200)
Q Consensus 97 ~~~~~~mDp~lld~L~~i~~~-----~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~-- 169 (200)
++.-.-|-.+.-|.|..+... -|. -++|+-++-... --+.+|+|-.|+|+||...+.+..+
T Consensus 74 tgadR~MTkRckdkLn~La~~Vmn~WpgV--kLrVteaWded~----------~h~~~SLHYEGRAvdIttSdrdrskyg 141 (170)
T 3n1g_B 74 SGADRLMTERCKERVNALAIAVMNMWPGV--RLRVTEGWDEDG----------HHAQDSLHYEGRALDITTSDRDRNKYG 141 (170)
T ss_dssp SSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCCSC----------CSCTTCGGGGTCEEEEEETTCCGGGHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECCCC----------CCCCCCCCCCCEEEEEEECCCCCHHHH
T ss_conf 77411441999999999999999767983--899876245888----------767532133663678885467620447
Q ss_pred -HHHHHHHCCCCEEEEE-CCEEEEECCC
Q ss_conf -9999996399847873-8846886698
Q gi|254780961|r 170 -LYKIAIRLKRGGVGYY-SKFLHIDVGR 195 (200)
Q Consensus 170 -l~~~a~~~~~gGvG~Y-s~FVHiD~gp 195 (200)
|++.|.+.++-=|-|- .++||+-+-+
T Consensus 142 ~LArLAveAGFDWV~Yesr~hiHcSVks 169 (170)
T 3n1g_B 142 LLARLAVEAGFDWVYYESRNHVHVSVKA 169 (170)
T ss_dssp HHHHHHHHTTCSEEECCCSSCEEEECCC
T ss_pred HHHHHHHHCCCCEEEECCCCEEEEEEEC
T ss_conf 8999998718876987465349998716