Query         gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs    223 out of 754
Neff          4.8 
Searched_HMMs 23785
Date          Tue May 31 23:43:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780961.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1lbu_A Muramoyl-pentapeptide c  99.7 9.9E-18 4.2E-22  126.2  10.8  119   76-200    61-207 (213)
  2 1xp2_A EAD500, PLY500, L-alany  97.8 7.6E-05 3.2E-09   48.3   7.3  100  100-199    30-154 (179)
  3 2ibg_E Protein hedgehog, GH039  97.0  0.0028 1.2E-07   38.8   7.9   85   99-195    56-149 (150)
  4 3n1f_A Indian hedgehog protein  96.9  0.0058 2.5E-07   36.9   8.9   93   91-195    66-168 (169)
  5 3n1g_B Desert hedgehog protein  96.2   0.026 1.1E-06   33.0   8.3   87   97-195    74-169 (170)
  6 1r44_A D-alanyl-D-alanine dipe  95.1   0.067 2.8E-06   30.5   6.8   68   97-164    36-128 (202)
  7 3g7k_A 3-methylitaconate isome  60.8     7.6 0.00032   18.1   3.7   45   27-83    102-147 (391)
  8 3dez_A OPRT, oprtase, orotate   34.6     4.6 0.00019   19.4  -0.9   99   79-184    77-182 (243)
  9 2fcl_A Hypothetical protein TM  32.3      24   0.001   15.0   4.1   83  100-196    11-100 (169)
 10 3kuu_A Phosphoribosylaminoimid  25.2      32  0.0013   14.3   3.5   54  103-156    23-84  (174)
 11 3oow_A Phosphoribosylaminoimid  23.7      34  0.0014   14.1   3.1   53  104-156    17-77  (166)
 12 2voy_D Sarcoplasmic/endoplasmi  23.1      33  0.0014   14.2   1.9   19    9-27      3-21  (26)

No 1  
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus G} SCOP: a.20.1.1 d.65.1.1
Probab=99.75  E-value=9.9e-18  Score=126.24  Aligned_cols=119  Identities=18%  Similarity=0.172  Sum_probs=93.1

Q ss_pred             CCCEECHHHHHHHHHHHCCCCCCCC-----------------------CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             3983489999999887265427985-----------------------36788999999999998099887899513688
Q gi|254780961|r   76 RGSQYNQEGLSQLNRLLYDWHSKQS-----------------------IDMDPQLFDFLWEIQQYFSVPEYIYILSGYRT  132 (200)
Q Consensus        76 ~~g~y~~~~l~~l~~~lRD~R~~~~-----------------------~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRs  132 (200)
                      .+|...+.-+.+|+-..++.-+...                       ....+++...|..++..++. .|+.|+|+|||
T Consensus        61 ~dG~~g~~T~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~r~~~g~-~pi~i~s~~Rs  139 (213)
T 1lbu_A           61 ADGIAGPATFNKIYQLQDDDCTPVNFTYAELNRCNSDWSGGKVSAATARANALVTMWKLQAMRHAMGD-KPITVNGGFRS  139 (213)
T ss_dssp             CSSCBCHHHHHHHHHHBCTTSSBTTCCTTTTCSSCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHTTS-CCCCEEECCCC
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf             99849999999998665246655566778876404777888666442210068999999999997488-42630576238


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEE---EEE--CCEEEEECCCCCCCC
Q ss_conf             56768986217888766731112899898289999999999996399847---873--884688669864479
Q gi|254780961|r  133 QETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLKRGGV---GYY--SKFLHIDVGRVRSWT  200 (200)
Q Consensus       133 p~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~~~gGv---G~Y--s~FVHiD~gp~R~Wt  200 (200)
                      |.+|..+     +++++|+|+.|.|+||.+.+.+..++.+.++++++.|+   |+|  ++|||+|++|.|.|+
T Consensus       140 ~~~n~~v-----~ga~~S~H~~G~A~DI~i~~~~~~~l~~~a~~~g~~gi~g~g~~~~~~fiHiD~~~~r~W~  207 (213)
T 1lbu_A          140 VTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEILGPGYPGHNDHTHVAGGDGRFWS  207 (213)
T ss_dssp             HHHHHHH-----TCCTTCGGGGTCEEEECCTTTCHHHHHHHGGGTTCSEEECTTSTTCSSSEEEECSSSCEEE
T ss_pred             HHHHHHH-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCCCC
T ss_conf             8886764-----3688873235543314158869999999999769986502411799997881799987679


No 2  
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=97.76  E-value=7.6e-05  Score=48.29  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=63.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHCCCC---------CCCCCCCCEEEEEEEECC--C-C-
Q ss_conf             536788999999999998099-8878995136885676898621788---------876673111289989828--9-9-
Q gi|254780961|r  100 SIDMDPQLFDFLWEIQQYFSV-PEYIYILSGYRTQETNKMLSRRNRK---------IARKSQHVLGKAVDFYIP--G-V-  165 (200)
Q Consensus       100 ~~~mDp~lld~L~~i~~~~g~-~~Pi~I~SGYRsp~~N~~lr~~~~G---------~Ak~S~H~~G~A~Di~i~--g-~-  165 (200)
                      ...|+|++.+.|..+.+.+-. .-++.|+|||||++.-..|=..+..         -..+|.|..|.|+||.+-  + . 
T Consensus        30 ~~gl~~~~~~al~~~~~~a~~~Gi~l~I~sgyRs~e~Q~~Ly~~g~~~~g~~~~~a~~g~S~H~~G~AvDi~~~~~dg~~  109 (179)
T 1xp2_A           30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKD  109 (179)
T ss_dssp             STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEEECTTSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             35679999999999999999789849998775199999999996155678714437999775698556574013058864


Q ss_pred             -----C---HHHHHHHHHHCCC--CEE-EEECCEEEEECCCCCCC
Q ss_conf             -----9---9999999996399--847-87388468866986447
Q gi|254780961|r  166 -----S---LRSLYKIAIRLKR--GGV-GYYSKFLHIDVGRVRSW  199 (200)
Q Consensus       166 -----~---~~~l~~~a~~~~~--gGv-G~Ys~FVHiD~gp~R~W  199 (200)
                           .   ..++.+.+..++.  ||- ..+....|......+.|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~Gl~WGG~W~~f~D~pHFEl~~~~~g  154 (179)
T 1xp2_A          110 VIWESTTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSG  154 (179)
T ss_dssp             EECCSSSHHHHHHHHHHHHTTCEEGGGSSSSCCTTEEESSCTTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf             335543389999999998437554777887889811886668788


No 3  
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Probab=97.03  E-value=0.0028  Score=38.82  Aligned_cols=85  Identities=14%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             CCCCCCHHHHHHHHHH----HH-HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH---H
Q ss_conf             8536788999999999----99-80998878995136885676898621788876673111289989828999999---9
Q gi|254780961|r   99 QSIDMDPQLFDFLWEI----QQ-YFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS---L  170 (200)
Q Consensus        99 ~~~~mDp~lld~L~~i----~~-~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~---l  170 (200)
                      .-.-|-.++-+.|..+    .+ +-|.  -++|+-|+....          -.+..|+|-.|+|+||...+.+..+   |
T Consensus        56 adR~MTkRck~kL~~La~~Vmn~wpgv--kLrV~eaWde~~----------~h~~~sLHyEGRAvdittsdrd~sk~g~L  123 (150)
T 2ibg_E           56 ADRLMSKRCKEKLNVLAYSVMNEWPGI--RLLVTESWDEDY----------HHGQESLHYEGRAVTIATSDRDQSKYGML  123 (150)
T ss_dssp             --CEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCSSC----------CSCSCCGGGGTCEEEEEETTCCGGGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECCCC----------CCCCCCCCCCCEEEEEEECCCCHHHHHHH
T ss_conf             306776999999999999999748883--899875024788----------87876535366146888347873677899


Q ss_pred             HHHHHHCCCCEEEEE-CCEEEEECCC
Q ss_conf             999996399847873-8846886698
Q gi|254780961|r  171 YKIAIRLKRGGVGYY-SKFLHIDVGR  195 (200)
Q Consensus       171 ~~~a~~~~~gGvG~Y-s~FVHiD~gp  195 (200)
                      ++.|...++--|.|- +++||+-+-+
T Consensus       124 arLAv~AGFDWV~Y~s~~hihcSVk~  149 (150)
T 2ibg_E          124 ARLAVEAGFDWVSYVSRRHIYCSVKS  149 (150)
T ss_dssp             HHHHHHHTCSEEECCCSSCEEEECCC
T ss_pred             HHHHHHCCCCEEEEECCCEEEEEEEC
T ss_conf             99999818976998137669998726


No 4  
>3n1f_A Indian hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3n1m_B 3n1o_A 3n1p_B 3d1m_A 3m1n_A 3mxw_A 3ho5_H 1vhh_A 2wg4_A 2wfx_A 3n1r_A 2wfq_A 2wfr_A 2wg3_A*
Probab=96.93  E-value=0.0058  Score=36.90  Aligned_cols=93  Identities=19%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             HHCCC-CCCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             72654-27985367889999999999980-----9988789951368856768986217888766731112899898289
Q gi|254780961|r   91 LLYDW-HSKQSIDMDPQLFDFLWEIQQYF-----SVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPG  164 (200)
Q Consensus        91 ~lRD~-R~~~~~~mDp~lld~L~~i~~~~-----g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g  164 (200)
                      +|+|. .++.-.-|-.++-+.|..+....     |.  -++|+-++-...+          -+.+|+|-.|+|+||...+
T Consensus        66 iF~dEe~tgadR~MtkRck~kLn~La~~VmnqWpgV--kLrVteaWDed~~----------h~~~SLHYEGRAvdIttSD  133 (169)
T 3n1f_A           66 IFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV--KLRVTEGWDEDGH----------HSEESLHYEGRAVDITTSD  133 (169)
T ss_dssp             EECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCCSCC----------SCTTCGGGGTCEEEEEETT
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECCCCC----------CCCCCCCCCCEEEEEEECC
T ss_conf             776766766037887999999999999999867980--8999861068888----------7865313056356788255


Q ss_pred             CCHHH---HHHHHHHCCCCEEEEE-CCEEEEECCC
Q ss_conf             99999---9999996399847873-8846886698
Q gi|254780961|r  165 VSLRS---LYKIAIRLKRGGVGYY-SKFLHIDVGR  195 (200)
Q Consensus       165 ~~~~~---l~~~a~~~~~gGvG~Y-s~FVHiD~gp  195 (200)
                      .+..+   |++.|.+.++-=|-|- .++||+-+-+
T Consensus       134 rdrskyg~LArLAVeAGFDWV~Yesr~hiHcSVks  168 (169)
T 3n1f_A          134 RDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKS  168 (169)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEEEETTEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEC
T ss_conf             76420068999998718876997365259998737


No 5  
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} PDB: 3n1q_B
Probab=96.22  E-value=0.026  Score=33.00  Aligned_cols=87  Identities=18%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHH-----HCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH--
Q ss_conf             798536788999999999998-----0998878995136885676898621788876673111289989828999999--
Q gi|254780961|r   97 SKQSIDMDPQLFDFLWEIQQY-----FSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS--  169 (200)
Q Consensus        97 ~~~~~~mDp~lld~L~~i~~~-----~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~--  169 (200)
                      ++.-.-|-.+.-|.|..+...     -|.  -++|+-++-...          --+.+|+|-.|+|+||...+.+..+  
T Consensus        74 tgadR~MTkRckdkLn~La~~Vmn~WpgV--kLrVteaWded~----------~h~~~SLHYEGRAvdIttSdrdrskyg  141 (170)
T 3n1g_B           74 SGADRLMTERCKERVNALAIAVMNMWPGV--RLRVTEGWDEDG----------HHAQDSLHYEGRALDITTSDRDRNKYG  141 (170)
T ss_dssp             SSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCCSC----------CSCTTCGGGGTCEEEEEETTCCGGGHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECCCC----------CCCCCCCCCCCEEEEEEECCCCCHHHH
T ss_conf             77411441999999999999999767983--899876245888----------767532133663678885467620447


Q ss_pred             -HHHHHHHCCCCEEEEE-CCEEEEECCC
Q ss_conf             -9999996399847873-8846886698
Q gi|254780961|r  170 -LYKIAIRLKRGGVGYY-SKFLHIDVGR  195 (200)
Q Consensus       170 -l~~~a~~~~~gGvG~Y-s~FVHiD~gp  195 (200)
                       |++.|.+.++-=|-|- .++||+-+-+
T Consensus       142 ~LArLAveAGFDWV~Yesr~hiHcSVks  169 (170)
T 3n1g_B          142 LLARLAVEAGFDWVYYESRNHVHVSVKA  169 (170)
T ss_dssp             HHHHHHHHTTCSEEECCCSSCEEEECCC
T ss_pred             HHHHHHHHCCCCEEEECCCCEEEEEEEC
T ss_conf             8999998718876987465349998716


No 6  
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4
Probab=95.05  E-value=0.067  Score=30.48  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=47.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH------------------------CCCCCCCCCC
Q ss_conf             7985367889999999999980998-87899513688567689862------------------------1788876673
Q gi|254780961|r   97 SKQSIDMDPQLFDFLWEIQQYFSVP-EYIYILSGYRTQETNKMLSR------------------------RNRKIARKSQ  151 (200)
Q Consensus        97 ~~~~~~mDp~lld~L~~i~~~~g~~-~Pi~I~SGYRsp~~N~~lr~------------------------~~~G~Ak~S~  151 (200)
                      .....-+-++..+.|..+++.+-.. --+.|.|||||.+.-..+-.                        ...-.+..|.
T Consensus        36 ~~~~~~Lr~~aa~aL~~~q~~l~~~G~~L~I~daYRp~~~Q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  115 (202)
T 1r44_A           36 EVNRIVGTYELAESLLKAKELAATQGYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSS  115 (202)
T ss_dssp             CSSSCEEEHHHHHHHHHHHHHTTSSSEEEEEEECCCCHHHHHHHHHHHTSCCCCSSHHHHCSSSCTTHHHHTSSSCSSCG
T ss_pred             CHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCC
T ss_conf             46567519999999999999999669638998566999999999998634213345541281243555411568888887


Q ss_pred             CCEEEEEEEECCC
Q ss_conf             1112899898289
Q gi|254780961|r  152 HVLGKAVDFYIPG  164 (200)
Q Consensus       152 H~~G~A~Di~i~g  164 (200)
                      |-.|.|+|+.+.+
T Consensus       116 H~tG~AVDltl~d  128 (202)
T 1r44_A          116 HSRGSAIDLTLYR  128 (202)
T ss_dssp             GGGTCEEEEEEEE
T ss_pred             CCCCCCEEEEECC
T ss_conf             7678761014313


No 7  
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri}
Probab=60.83  E-value=7.6  Score=18.07  Aligned_cols=45  Identities=11%  Similarity=0.148  Sum_probs=31.2

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCCCCEEEEEEC-CCCEECHH
Q ss_conf             1210012212332100000110100589832899981898847999980-39834899
Q gi|254780961|r   27 TSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFK-RGSQYNQE   83 (200)
Q Consensus        27 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~R~L~l~n~~TgE~~~~~y~-~~g~y~~~   83 (200)
                      +-..|+.+-|+++            ..++.-+++++|+|||..+..++. .+|+...+
T Consensus       102 aVgpfAie~GLV~------------~~~~~t~VRI~n~NT~k~i~~~v~~~~G~~~~~  147 (391)
T 3g7k_A          102 GVGPFAIDESFVK------------AVEPMTRVCIHNTNTGKLLYAEVEVEDGKAKVS  147 (391)
T ss_dssp             HHHHHHHHTTSSC------------CCSSEEEEEEEETTTCCEEEEEEEEETTEECCC
T ss_pred             HCCHHHHHCCCCC------------CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf             0305688678723------------689945899997178987999997579820210


No 8  
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=34.56  E-value=4.6  Score=19.40  Aligned_cols=99  Identities=11%  Similarity=-0.049  Sum_probs=45.1

Q ss_pred             EECHHHHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             3489999999887265427------9853678899999999999809988789951368856768986217888766731
Q gi|254780961|r   79 QYNQEGLSQLNRLLYDWHS------KQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQH  152 (200)
Q Consensus        79 ~y~~~~l~~l~~~lRD~R~------~~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H  152 (200)
                      --.|+.+..+..+|-+.=.      +-+.-....-+-+-..+...++  .|+.++   |..+.+--..++-.|.-..-. 
T Consensus        77 ~s~P~~~~~i~~~~~~~i~~~~~~~d~i~G~a~~gIp~a~~ia~~~~--~p~~~v---Rke~K~~G~~~~ieg~~~~g~-  150 (243)
T 3dez_A           77 LSYPETRTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMN--LPLAYI---RSKPKDHGAGNQIEGRVTKGQ-  150 (243)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHTT--CCEEEE---CSSCC-----CCEESCCCTTC-
T ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHC--CCCEEE---EEEECCCCCCEEEECCCCCCC-
T ss_conf             05999999999999999986224566342331121899999998617--984146---764047763046730359999-


Q ss_pred             CEE-EEEEEECCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             112-89989828999999999999639984787
Q gi|254780961|r  153 VLG-KAVDFYIPGVSLRSLYKIAIRLKRGGVGY  184 (200)
Q Consensus       153 ~~G-~A~Di~i~g~~~~~l~~~a~~~~~gGvG~  184 (200)
                       +- .-=|+--.|.+..+..+..++.+.--++.
T Consensus       151 -rVlIVEDViTTGgSileai~~l~~~G~~V~~v  182 (243)
T 3dez_A          151 -KMVIIEDLISTGGSVLDAVAAAQREGADVLGV  182 (243)
T ss_dssp             -EEEEEEEEESSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             -EEEEEEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             -89998511456744589999999879979999


No 9  
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=32.34  E-value=24  Score=15.04  Aligned_cols=83  Identities=10%  Similarity=0.083  Sum_probs=51.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC
Q ss_conf             5367889999999999980998-878995136885676898621788876673111289989828999999999999639
Q gi|254780961|r  100 SIDMDPQLFDFLWEIQQYFSVP-EYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLK  178 (200)
Q Consensus       100 ~~~mDp~lld~L~~i~~~~g~~-~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~~  178 (200)
                      -+-|.|+.++.|..+.+.|... -|+.|+-|+-...+         |..+.     -.=+||.+...+..++..+...++
T Consensus        11 ~~mi~~~~~~~l~~i~~~L~~~~v~~~l~Gs~A~~~~---------G~~r~-----t~DIDi~i~~~d~~~~~~~l~~~g   76 (169)
T 2fcl_A           11 HHMIRPEYLRVLRXIYDRLXNEXVNWVVTGSLSFALQ---------GVPVE-----VHDIDIQTDEEGAYEIERIFSEFV   76 (169)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTSSCCEEEEHHHHHHHT---------TCCCC-----CCSEEEEECHHHHHHHHHHTGGGE
T ss_pred             HHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHC---------CCCCC-----CCCEEEEECHHHHHHHHHHHHHCC
T ss_conf             5138999999999999999855998897079899886---------98988-----775248985888999999999703


Q ss_pred             CCEEEEE------CCEEEEECCCC
Q ss_conf             9847873------88468866986
Q gi|254780961|r  179 RGGVGYY------SKFLHIDVGRV  196 (200)
Q Consensus       179 ~gGvG~Y------s~FVHiD~gp~  196 (200)
                      ......+      +.|.++-..++
T Consensus        77 ~~~~~~~~~~~~~~~f~~~~i~g~  100 (169)
T 2fcl_A           77 SXXVRFSSTEXICSHFGELIIDGI  100 (169)
T ss_dssp             EEEEEEEECSSEEEEEEEEEETTE
T ss_pred             CCCCCCCCCCCEECEEEEEEECCE
T ss_conf             267877754442253899988998


No 10 
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=25.17  E-value=32  Score=14.27  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC--C------CCCCCCCCCEEE
Q ss_conf             78899999999999809988789951368856768986217--8------887667311128
Q gi|254780961|r  103 MDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRN--R------KIARKSQHVLGK  156 (200)
Q Consensus       103 mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~--~------G~Ak~S~H~~G~  156 (200)
                      =|...++-....-+.||.+-.++|.|+.|+|+.=...-+..  .      .+|-.|-|+-|.
T Consensus        23 SD~~~~~~~~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~~~~~~~~viIa~AG~aa~LpGv   84 (174)
T 3kuu_A           23 SDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM   84 (174)
T ss_dssp             GGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH
T ss_conf             68999999999999839985888870323878999999999863874999834676566304


No 11 
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp}
Probab=23.72  E-value=34  Score=14.10  Aligned_cols=53  Identities=17%  Similarity=0.084  Sum_probs=34.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC--C------CCCCCCCCCEEE
Q ss_conf             8899999999999809988789951368856768986217--8------887667311128
Q gi|254780961|r  104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRN--R------KIARKSQHVLGK  156 (200)
Q Consensus       104 Dp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~--~------G~Ak~S~H~~G~  156 (200)
                      |...+.-....-+.||..-.++|.|+.|+|+.=....+..  .      .+|-.|-|+-|.
T Consensus        17 D~~~~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~~~~~~~~ViIa~AG~aa~LpGv   77 (166)
T 3oow_A           17 DWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM   77 (166)
T ss_dssp             GHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH
T ss_conf             8999999999999849945888881607989999999999855974999805776445411


No 12 
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=23.11  E-value=33  Score=14.22  Aligned_cols=19  Identities=26%  Similarity=0.368  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             8999999998531122211
Q gi|254780961|r    9 ILKVIWIGLYVSVASFFVT   27 (200)
Q Consensus         9 ~~~~~~~g~~~~~a~~~~~   27 (200)
                      ++|++.+|.+.+.++.-.+
T Consensus         3 FfRY~aiG~YVG~aTVGaa   21 (26)
T 2voy_D            3 FFRYMAIGGYVGAATVGAA   21 (26)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEEEEEEECHH
T ss_conf             6554742047743242035


Done!