Query gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 200 No_of_seqs 223 out of 754 Neff 4.8 Searched_HMMs 23785 Date Tue May 31 23:43:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780961.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1lbu_A Muramoyl-pentapeptide c 99.7 9.9E-18 4.2E-22 126.2 10.8 119 76-200 61-207 (213) 2 1xp2_A EAD500, PLY500, L-alany 97.8 7.6E-05 3.2E-09 48.3 7.3 100 100-199 30-154 (179) 3 2ibg_E Protein hedgehog, GH039 97.0 0.0028 1.2E-07 38.8 7.9 85 99-195 56-149 (150) 4 3n1f_A Indian hedgehog protein 96.9 0.0058 2.5E-07 36.9 8.9 93 91-195 66-168 (169) 5 3n1g_B Desert hedgehog protein 96.2 0.026 1.1E-06 33.0 8.3 87 97-195 74-169 (170) 6 1r44_A D-alanyl-D-alanine dipe 95.1 0.067 2.8E-06 30.5 6.8 68 97-164 36-128 (202) 7 3g7k_A 3-methylitaconate isome 60.8 7.6 0.00032 18.1 3.7 45 27-83 102-147 (391) 8 3dez_A OPRT, oprtase, orotate 34.6 4.6 0.00019 19.4 -0.9 99 79-184 77-182 (243) 9 2fcl_A Hypothetical protein TM 32.3 24 0.001 15.0 4.1 83 100-196 11-100 (169) 10 3kuu_A Phosphoribosylaminoimid 25.2 32 0.0013 14.3 3.5 54 103-156 23-84 (174) 11 3oow_A Phosphoribosylaminoimid 23.7 34 0.0014 14.1 3.1 53 104-156 17-77 (166) 12 2voy_D Sarcoplasmic/endoplasmi 23.1 33 0.0014 14.2 1.9 19 9-27 3-21 (26) No 1 >1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus G} SCOP: a.20.1.1 d.65.1.1 Probab=99.75 E-value=9.9e-18 Score=126.24 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=93.1 Q ss_pred CCCEECHHHHHHHHHHHCCCCCCCC-----------------------CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 3983489999999887265427985-----------------------36788999999999998099887899513688 Q gi|254780961|r 76 RGSQYNQEGLSQLNRLLYDWHSKQS-----------------------IDMDPQLFDFLWEIQQYFSVPEYIYILSGYRT 132 (200) Q Consensus 76 ~~g~y~~~~l~~l~~~lRD~R~~~~-----------------------~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRs 132 (200) .+|...+.-+.+|+-..++.-+... ....+++...|..++..++. .|+.|+|+||| T Consensus 61 ~dG~~g~~T~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~L~~~r~~~g~-~pi~i~s~~Rs 139 (213) T 1lbu_A 61 ADGIAGPATFNKIYQLQDDDCTPVNFTYAELNRCNSDWSGGKVSAATARANALVTMWKLQAMRHAMGD-KPITVNGGFRS 139 (213) T ss_dssp CSSCBCHHHHHHHHHHBCTTSSBTTCCTTTTCSSCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHTTS-CCCCEEECCCC T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCC T ss_conf 99849999999998665246655566778876404777888666442210068999999999997488-42630576238 Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEE---EEE--CCEEEEECCCCCCCC Q ss_conf 56768986217888766731112899898289999999999996399847---873--884688669864479 Q gi|254780961|r 133 QETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLKRGGV---GYY--SKFLHIDVGRVRSWT 200 (200) Q Consensus 133 p~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~~~gGv---G~Y--s~FVHiD~gp~R~Wt 200 (200) |.+|..+ +++++|+|+.|.|+||.+.+.+..++.+.++++++.|+ |+| ++|||+|++|.|.|+ T Consensus 140 ~~~n~~v-----~ga~~S~H~~G~A~DI~i~~~~~~~l~~~a~~~g~~gi~g~g~~~~~~fiHiD~~~~r~W~ 207 (213) T 1lbu_A 140 VTCNSNV-----GGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEILGPGYPGHNDHTHVAGGDGRFWS 207 (213) T ss_dssp HHHHHHH-----TCCTTCGGGGTCEEEECCTTTCHHHHHHHGGGTTCSEEECTTSTTCSSSEEEECSSSCEEE T ss_pred HHHHHHH-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCCCC T ss_conf 8886764-----3688873235543314158869999999999769986502411799997881799987679 No 2 >1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A Probab=97.76 E-value=7.6e-05 Score=48.29 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=63.2 Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHCCCC---------CCCCCCCCEEEEEEEECC--C-C- Q ss_conf 536788999999999998099-8878995136885676898621788---------876673111289989828--9-9- Q gi|254780961|r 100 SIDMDPQLFDFLWEIQQYFSV-PEYIYILSGYRTQETNKMLSRRNRK---------IARKSQHVLGKAVDFYIP--G-V- 165 (200) Q Consensus 100 ~~~mDp~lld~L~~i~~~~g~-~~Pi~I~SGYRsp~~N~~lr~~~~G---------~Ak~S~H~~G~A~Di~i~--g-~- 165 (200) ...|+|++.+.|..+.+.+-. .-++.|+|||||++.-..|=..+.. -..+|.|..|.|+||.+- + . T Consensus 30 ~~gl~~~~~~al~~~~~~a~~~Gi~l~I~sgyRs~e~Q~~Ly~~g~~~~g~~~~~a~~g~S~H~~G~AvDi~~~~~dg~~ 109 (179) T 1xp2_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKD 109 (179) T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEEECTTSSS T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCC T ss_conf 35679999999999999999789849998775199999999996155678714437999775698556574013058864 Q ss_pred -----C---HHHHHHHHHHCCC--CEE-EEECCEEEEECCCCCCC Q ss_conf -----9---9999999996399--847-87388468866986447 Q gi|254780961|r 166 -----S---LRSLYKIAIRLKR--GGV-GYYSKFLHIDVGRVRSW 199 (200) Q Consensus 166 -----~---~~~l~~~a~~~~~--gGv-G~Ys~FVHiD~gp~R~W 199 (200) . ..++.+.+..++. ||- ..+....|......+.| T Consensus 110 ~~~~~~~~~~~~~~~~~~~~Gl~WGG~W~~f~D~pHFEl~~~~~g 154 (179) T 1xp2_A 110 VIWESTTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSG 154 (179) T ss_dssp EECCSSSHHHHHHHHHHHHTTCEEGGGSSSSCCTTEEESSCTTTT T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCC T ss_conf 335543389999999998437554777887889811886668788 No 3 >2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2 Probab=97.03 E-value=0.0028 Score=38.82 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=65.9 Q ss_pred CCCCCCHHHHHHHHHH----HH-HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH---H Q ss_conf 8536788999999999----99-80998878995136885676898621788876673111289989828999999---9 Q gi|254780961|r 99 QSIDMDPQLFDFLWEI----QQ-YFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS---L 170 (200) Q Consensus 99 ~~~~mDp~lld~L~~i----~~-~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~---l 170 (200) .-.-|-.++-+.|..+ .+ +-|. -++|+-|+.... -.+..|+|-.|+|+||...+.+..+ | T Consensus 56 adR~MTkRck~kL~~La~~Vmn~wpgv--kLrV~eaWde~~----------~h~~~sLHyEGRAvdittsdrd~sk~g~L 123 (150) T 2ibg_E 56 ADRLMSKRCKEKLNVLAYSVMNEWPGI--RLLVTESWDEDY----------HHGQESLHYEGRAVTIATSDRDQSKYGML 123 (150) T ss_dssp --CEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCSSC----------CSCSCCGGGGTCEEEEEETTCCGGGHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECCCC----------CCCCCCCCCCCEEEEEEECCCCHHHHHHH T ss_conf 306776999999999999999748883--899875024788----------87876535366146888347873677899 Q ss_pred HHHHHHCCCCEEEEE-CCEEEEECCC Q ss_conf 999996399847873-8846886698 Q gi|254780961|r 171 YKIAIRLKRGGVGYY-SKFLHIDVGR 195 (200) Q Consensus 171 ~~~a~~~~~gGvG~Y-s~FVHiD~gp 195 (200) ++.|...++--|.|- +++||+-+-+ T Consensus 124 arLAv~AGFDWV~Y~s~~hihcSVk~ 149 (150) T 2ibg_E 124 ARLAVEAGFDWVSYVSRRHIYCSVKS 149 (150) T ss_dssp HHHHHHHTCSEEECCCSSCEEEECCC T ss_pred HHHHHHCCCCEEEEECCCEEEEEEEC T ss_conf 99999818976998137669998726 No 4 >3n1f_A Indian hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3n1m_B 3n1o_A 3n1p_B 3d1m_A 3m1n_A 3mxw_A 3ho5_H 1vhh_A 2wg4_A 2wfx_A 3n1r_A 2wfq_A 2wfr_A 2wg3_A* Probab=96.93 E-value=0.0058 Score=36.90 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=69.0 Q ss_pred HHCCC-CCCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCC Q ss_conf 72654-27985367889999999999980-----9988789951368856768986217888766731112899898289 Q gi|254780961|r 91 LLYDW-HSKQSIDMDPQLFDFLWEIQQYF-----SVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPG 164 (200) Q Consensus 91 ~lRD~-R~~~~~~mDp~lld~L~~i~~~~-----g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g 164 (200) +|+|. .++.-.-|-.++-+.|..+.... |. -++|+-++-...+ -+.+|+|-.|+|+||...+ T Consensus 66 iF~dEe~tgadR~MtkRck~kLn~La~~VmnqWpgV--kLrVteaWDed~~----------h~~~SLHYEGRAvdIttSD 133 (169) T 3n1f_A 66 IFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV--KLRVTEGWDEDGH----------HSEESLHYEGRAVDITTSD 133 (169) T ss_dssp EECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCCSCC----------SCTTCGGGGTCEEEEEETT T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECCCCC----------CCCCCCCCCCEEEEEEECC T ss_conf 776766766037887999999999999999867980--8999861068888----------7865313056356788255 Q ss_pred CCHHH---HHHHHHHCCCCEEEEE-CCEEEEECCC Q ss_conf 99999---9999996399847873-8846886698 Q gi|254780961|r 165 VSLRS---LYKIAIRLKRGGVGYY-SKFLHIDVGR 195 (200) Q Consensus 165 ~~~~~---l~~~a~~~~~gGvG~Y-s~FVHiD~gp 195 (200) .+..+ |++.|.+.++-=|-|- .++||+-+-+ T Consensus 134 rdrskyg~LArLAVeAGFDWV~Yesr~hiHcSVks 168 (169) T 3n1f_A 134 RDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKS 168 (169) T ss_dssp CCGGGHHHHHHHHHHTTCSEEEEEETTEEEEECCC T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEC T ss_conf 76420068999998718876997365259998737 No 5 >3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} PDB: 3n1q_B Probab=96.22 E-value=0.026 Score=33.00 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=63.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHH-----HCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH-- Q ss_conf 798536788999999999998-----0998878995136885676898621788876673111289989828999999-- Q gi|254780961|r 97 SKQSIDMDPQLFDFLWEIQQY-----FSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS-- 169 (200) Q Consensus 97 ~~~~~~mDp~lld~L~~i~~~-----~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~-- 169 (200) ++.-.-|-.+.-|.|..+... -|. -++|+-++-... --+.+|+|-.|+|+||...+.+..+ T Consensus 74 tgadR~MTkRckdkLn~La~~Vmn~WpgV--kLrVteaWded~----------~h~~~SLHYEGRAvdIttSdrdrskyg 141 (170) T 3n1g_B 74 SGADRLMTERCKERVNALAIAVMNMWPGV--RLRVTEGWDEDG----------HHAQDSLHYEGRALDITTSDRDRNKYG 141 (170) T ss_dssp SSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCCSC----------CSCTTCGGGGTCEEEEEETTCCGGGHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECCCC----------CCCCCCCCCCCEEEEEEECCCCCHHHH T ss_conf 77411441999999999999999767983--899876245888----------767532133663678885467620447 Q ss_pred -HHHHHHHCCCCEEEEE-CCEEEEECCC Q ss_conf -9999996399847873-8846886698 Q gi|254780961|r 170 -LYKIAIRLKRGGVGYY-SKFLHIDVGR 195 (200) Q Consensus 170 -l~~~a~~~~~gGvG~Y-s~FVHiD~gp 195 (200) |++.|.+.++-=|-|- .++||+-+-+ T Consensus 142 ~LArLAveAGFDWV~Yesr~hiHcSVks 169 (170) T 3n1g_B 142 LLARLAVEAGFDWVYYESRNHVHVSVKA 169 (170) T ss_dssp HHHHHHHHTTCSEEECCCSSCEEEECCC T ss_pred HHHHHHHHCCCCEEEECCCCEEEEEEEC T ss_conf 8999998718876987465349998716 No 6 >1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4 Probab=95.05 E-value=0.067 Score=30.48 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=47.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH------------------------CCCCCCCCCC Q ss_conf 7985367889999999999980998-87899513688567689862------------------------1788876673 Q gi|254780961|r 97 SKQSIDMDPQLFDFLWEIQQYFSVP-EYIYILSGYRTQETNKMLSR------------------------RNRKIARKSQ 151 (200) Q Consensus 97 ~~~~~~mDp~lld~L~~i~~~~g~~-~Pi~I~SGYRsp~~N~~lr~------------------------~~~G~Ak~S~ 151 (200) .....-+-++..+.|..+++.+-.. --+.|.|||||.+.-..+-. ...-.+..|. T Consensus 36 ~~~~~~Lr~~aa~aL~~~q~~l~~~G~~L~I~daYRp~~~Q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 115 (202) T 1r44_A 36 EVNRIVGTYELAESLLKAKELAATQGYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSS 115 (202) T ss_dssp CSSSCEEEHHHHHHHHHHHHHTTSSSEEEEEEECCCCHHHHHHHHHHHTSCCCCSSHHHHCSSSCTTHHHHTSSSCSSCG T ss_pred CHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCC T ss_conf 46567519999999999999999669638998566999999999998634213345541281243555411568888887 Q ss_pred CCEEEEEEEECCC Q ss_conf 1112899898289 Q gi|254780961|r 152 HVLGKAVDFYIPG 164 (200) Q Consensus 152 H~~G~A~Di~i~g 164 (200) |-.|.|+|+.+.+ T Consensus 116 H~tG~AVDltl~d 128 (202) T 1r44_A 116 HSRGSAIDLTLYR 128 (202) T ss_dssp GGGTCEEEEEEEE T ss_pred CCCCCCEEEEECC T ss_conf 7678761014313 No 7 >3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri} Probab=60.83 E-value=7.6 Score=18.07 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=31.2 Q ss_pred CCCCCCCCHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCCCCEEEEEEC-CCCEECHH Q ss_conf 1210012212332100000110100589832899981898847999980-39834899 Q gi|254780961|r 27 TSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFK-RGSQYNQE 83 (200) Q Consensus 27 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~R~L~l~n~~TgE~~~~~y~-~~g~y~~~ 83 (200) +-..|+.+-|+++ ..++.-+++++|+|||..+..++. .+|+...+ T Consensus 102 aVgpfAie~GLV~------------~~~~~t~VRI~n~NT~k~i~~~v~~~~G~~~~~ 147 (391) T 3g7k_A 102 GVGPFAIDESFVK------------AVEPMTRVCIHNTNTGKLLYAEVEVEDGKAKVS 147 (391) T ss_dssp HHHHHHHHTTSSC------------CCSSEEEEEEEETTTCCEEEEEEEEETTEECCC T ss_pred HCCHHHHHCCCCC------------CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCC T ss_conf 0305688678723------------689945899997178987999997579820210 No 8 >3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans} Probab=34.56 E-value=4.6 Score=19.40 Aligned_cols=99 Identities=11% Similarity=-0.049 Sum_probs=45.1 Q ss_pred EECHHHHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 3489999999887265427------9853678899999999999809988789951368856768986217888766731 Q gi|254780961|r 79 QYNQEGLSQLNRLLYDWHS------KQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQH 152 (200) Q Consensus 79 ~y~~~~l~~l~~~lRD~R~------~~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H 152 (200) --.|+.+..+..+|-+.=. +-+.-....-+-+-..+...++ .|+.++ |..+.+--..++-.|.-..-. T Consensus 77 ~s~P~~~~~i~~~~~~~i~~~~~~~d~i~G~a~~gIp~a~~ia~~~~--~p~~~v---Rke~K~~G~~~~ieg~~~~g~- 150 (243) T 3dez_A 77 LSYPETRTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMN--LPLAYI---RSKPKDHGAGNQIEGRVTKGQ- 150 (243) T ss_dssp GGCHHHHHHHHHHHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHTT--CCEEEE---CSSCC-----CCEESCCCTTC- T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHC--CCCEEE---EEEECCCCCCEEEECCCCCCC- T ss_conf 05999999999999999986224566342331121899999998617--984146---764047763046730359999- Q ss_pred CEE-EEEEEECCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 112-89989828999999999999639984787 Q gi|254780961|r 153 VLG-KAVDFYIPGVSLRSLYKIAIRLKRGGVGY 184 (200) Q Consensus 153 ~~G-~A~Di~i~g~~~~~l~~~a~~~~~gGvG~ 184 (200) +- .-=|+--.|.+..+..+..++.+.--++. T Consensus 151 -rVlIVEDViTTGgSileai~~l~~~G~~V~~v 182 (243) T 3dez_A 151 -KMVIIEDLISTGGSVLDAVAAAQREGADVLGV 182 (243) T ss_dssp -EEEEEEEEESSSHHHHHHHHHHHHTTCEEEEE T ss_pred -EEEEEEEEECCCCCHHHHHHHHHHCCCEEEEE T ss_conf -89998511456744589999999879979999 No 9 >2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A Probab=32.34 E-value=24 Score=15.04 Aligned_cols=83 Identities=10% Similarity=0.083 Sum_probs=51.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC Q ss_conf 5367889999999999980998-878995136885676898621788876673111289989828999999999999639 Q gi|254780961|r 100 SIDMDPQLFDFLWEIQQYFSVP-EYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLK 178 (200) Q Consensus 100 ~~~mDp~lld~L~~i~~~~g~~-~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~~ 178 (200) -+-|.|+.++.|..+.+.|... -|+.|+-|+-...+ |..+. -.=+||.+...+..++..+...++ T Consensus 11 ~~mi~~~~~~~l~~i~~~L~~~~v~~~l~Gs~A~~~~---------G~~r~-----t~DIDi~i~~~d~~~~~~~l~~~g 76 (169) T 2fcl_A 11 HHMIRPEYLRVLRXIYDRLXNEXVNWVVTGSLSFALQ---------GVPVE-----VHDIDIQTDEEGAYEIERIFSEFV 76 (169) T ss_dssp --CCCHHHHHHHHHHHHHHTTSSCCEEEEHHHHHHHT---------TCCCC-----CCSEEEEECHHHHHHHHHHTGGGE T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHC---------CCCCC-----CCCEEEEECHHHHHHHHHHHHHCC T ss_conf 5138999999999999999855998897079899886---------98988-----775248985888999999999703 Q ss_pred CCEEEEE------CCEEEEECCCC Q ss_conf 9847873------88468866986 Q gi|254780961|r 179 RGGVGYY------SKFLHIDVGRV 196 (200) Q Consensus 179 ~gGvG~Y------s~FVHiD~gp~ 196 (200) ......+ +.|.++-..++ T Consensus 77 ~~~~~~~~~~~~~~~f~~~~i~g~ 100 (169) T 2fcl_A 77 SXXVRFSSTEXICSHFGELIIDGI 100 (169) T ss_dssp EEEEEEEECSSEEEEEEEEEETTE T ss_pred CCCCCCCCCCCEECEEEEEEECCE T ss_conf 267877754442253899988998 No 10 >3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Probab=25.17 E-value=32 Score=14.27 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=35.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC--C------CCCCCCCCCEEE Q ss_conf 78899999999999809988789951368856768986217--8------887667311128 Q gi|254780961|r 103 MDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRN--R------KIARKSQHVLGK 156 (200) Q Consensus 103 mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~--~------G~Ak~S~H~~G~ 156 (200) =|...++-....-+.||.+-.++|.|+.|+|+.=...-+.. . .+|-.|-|+-|. T Consensus 23 SD~~~~~~~~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~~~~~~~~viIa~AG~aa~LpGv 84 (174) T 3kuu_A 23 SDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM 84 (174) T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH T ss_conf 68999999999999839985888870323878999999999863874999834676566304 No 11 >3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} Probab=23.72 E-value=34 Score=14.10 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=34.7 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC--C------CCCCCCCCCEEE Q ss_conf 8899999999999809988789951368856768986217--8------887667311128 Q gi|254780961|r 104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRN--R------KIARKSQHVLGK 156 (200) Q Consensus 104 Dp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~--~------G~Ak~S~H~~G~ 156 (200) |...+.-....-+.||..-.++|.|+.|+|+.=....+.. . .+|-.|-|+-|. T Consensus 17 D~~~~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~~~~~~~~ViIa~AG~aa~LpGv 77 (166) T 3oow_A 17 DWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM 77 (166) T ss_dssp GHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH T ss_conf 8999999999999849945888881607989999999999855974999805776445411 No 12 >2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus} Probab=23.11 E-value=33 Score=14.22 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 8999999998531122211 Q gi|254780961|r 9 ILKVIWIGLYVSVASFFVT 27 (200) Q Consensus 9 ~~~~~~~g~~~~~a~~~~~ 27 (200) ++|++.+|.+.+.++.-.+ T Consensus 3 FfRY~aiG~YVG~aTVGaa 21 (26) T 2voy_D 3 FFRYMAIGGYVGAATVGAA 21 (26) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEEEEEEEEEEECHH T ss_conf 6554742047743242035 Done!