HHSEARCH alignment of GI: 254780961 and SCOP domain: d3d1ma1

Alignment
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.96  E-value=0.0032  Score=37.03  Aligned_cols=86  Identities=20%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             CCCCCCCCHHHHHHHHHH----HHHH-CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH--
Q ss_conf             798536788999999999----9980-998878995136885676898621788876673111289989828999999--
Q gi|254780961|r   97 SKQSIDMDPQLFDFLWEI----QQYF-SVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS--  169 (200)
Q Consensus        97 ~~~~~~mDp~lld~L~~i----~~~~-g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~--  169 (200)
                      ++.-.-|..+.-+.|..+    .+.+ |.  -+.|+-||....          -.++.|+|-.|+|+||...+.+..+  
T Consensus        53 tgadR~Mt~Rck~kLn~LA~~Vmn~w~gv--kLrV~eaWde~~----------~h~~~SLHyEGRAvdittsd~d~sk~~  120 (148)
T d3d1ma1          53 TGADRLMTQRCKDKLNALAISVMNQWPGV--KLRVTEGWDEDG----------HHSEESLHYEGRAVDITTSDRDRSKYG  120 (148)
T ss_dssp             SSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCCSC----------CSCTTCGGGGTCEEEEEETTCCGGGHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCCC----------CCCCCCCCCCCEEEEEEECCCCHHHHH
T ss_conf             77403563999999999999999857880--688775133688----------768654344553678883579878999


Q ss_pred             -HHHHHHHCCCCEEEEE-CCEEEEECC
Q ss_conf             -9999996399847873-884688669
Q gi|254780961|r  170 -LYKIAIRLKRGGVGYY-SKFLHIDVG  194 (200)
Q Consensus       170 -l~~~a~~~~~gGvG~Y-s~FVHiD~g  194 (200)
                       |++.|...++.=|-|- +++||+-+.
T Consensus       121 ~Larlav~AGFDWV~Yesr~hIh~SVk  147 (148)
T d3d1ma1         121 MLARLAVEAGFDWVYYESKAHIHCSVK  147 (148)
T ss_dssp             HHHHHHHHTTCSEEEEEETTEEEEECC
T ss_pred             HHHHHHHHCCCCEEEECCCCEEEEEEC
T ss_conf             999999871898798626745998840


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Hedgehog (development protein), N-terminal signaling domain
domain: Sonic hedgehog
species: Mouse (Mus musculus) [TaxId: 10090]