Query gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 200 No_of_seqs 223 out of 754 Neff 4.8 Searched_HMMs 13730 Date Wed Jun 1 10:56:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780961.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1lbua2 d.65.1.1 (A:84-213) Zn 99.9 1.8E-28 1.3E-32 189.7 5.2 110 85-200 5-124 (130) 2 d2vo9a1 d.65.1.5 (A:1-148) L-a 97.6 0.00011 7.9E-09 45.9 7.3 63 100-162 18-90 (148) 3 d3d1ma1 d.65.1.2 (A:41-188) So 97.0 0.0032 2.3E-07 37.0 8.9 86 97-194 53-147 (148) 4 d1r44a_ d.65.1.4 (A:) D-Ala-D- 84.2 1.2 8.9E-05 21.4 6.7 65 99-163 38-127 (202) 5 d2h9fa1 d.21.1.4 (A:1-182) Hyp 40.8 9.5 0.0007 16.0 2.8 47 27-81 110-157 (182) 6 d1qcza_ c.23.8.1 (A:) N5-CAIR 23.8 20 0.0014 14.1 3.4 53 104-156 13-73 (163) 7 d1sr4c_ b.42.2.1 (C:) Cytoleth 22.8 5.1 0.00037 17.7 -1.1 39 58-101 15-53 (154) 8 d2r25b1 c.23.1.1 (B:1087-1214) 19.0 25 0.0018 13.5 5.6 58 107-177 66-123 (128) 9 d1xmpa_ c.23.8.1 (A:) N5-CAIR 16.4 28 0.0021 13.1 3.5 53 104-156 13-73 (155) 10 d1u11a_ c.23.8.1 (A:) N5-CAIR 13.9 33 0.0024 12.7 3.5 38 104-141 14-51 (159) No 1 >d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]} Probab=99.94 E-value=1.8e-28 Score=189.73 Aligned_cols=110 Identities=23% Similarity=0.306 Sum_probs=97.6 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHH-----HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEE Q ss_conf 99998872654279853678899-----9999999998099887899513688567689862178887667311128998 Q gi|254780961|r 85 LSQLNRLLYDWHSKQSIDMDPQL-----FDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVD 159 (200) Q Consensus 85 l~~l~~~lRD~R~~~~~~mDp~l-----ld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~D 159 (200) +.||+.+.+||+.+.+..++++. +..|+.+++.+| .+||.|+||||||++|+.+ |+|++|+|++|+|+| T Consensus 5 ~~El~~~~~~~~~~~~~~~~~~~n~l~~~~~L~~lR~~~G-~~Pi~ItSgYRsp~~N~~v-----gga~~S~H~~G~A~D 78 (130) T d1lbua2 5 YAELNRCNSDWSGGKVSAATARANALVTMWKLQAMRHAMG-DKPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAAD 78 (130) T ss_dssp TTTTCSSCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHTT-SCCCCEEECCCCHHHHHHH-----TCCTTCGGGGTCEEE T ss_pred HHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECHHHHHHH-----CCCCCCCCCCCEEEE T ss_conf 8998666720215998801467769999999999999958-9747999888688898875-----367877566856889 Q ss_pred EECCCCCHHHHHHHHHHCCCC---EEEEE--CCEEEEECCCCCCCC Q ss_conf 982899999999999963998---47873--884688669864479 Q gi|254780961|r 160 FYIPGVSLRSLYKIAIRLKRG---GVGYY--SKFLHIDVGRVRSWT 200 (200) Q Consensus 160 i~i~g~~~~~l~~~a~~~~~g---GvG~Y--s~FVHiD~gp~R~Wt 200 (200) |.++|.+..++.++++++++. |+|+| ++|||||++|.|.|| T Consensus 79 i~v~g~~~~~~~~~a~~~gf~~~~g~G~~~~~~fvHvD~~~~r~Ws 124 (130) T d1lbua2 79 LGAGSQGFCALAQAARNHGFTEILGPGYPGHNDHTHVAGGDGRFWS 124 (130) T ss_dssp ECCTTTCHHHHHHHGGGTTCSEEECTTSTTCSSSEEEECSSSCEEE T ss_pred EECCCCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCCCCC T ss_conf 9617999999999999769982435500799997887899997458 No 2 >d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply {Listeria phage A500 [TaxId: 40522]} Probab=97.60 E-value=0.00011 Score=45.93 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=48.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHCCCC---------CCCCCCCCEEEEEEEEC Q ss_conf 5367889999999999980998-878995136885676898621788---------87667311128998982 Q gi|254780961|r 100 SIDMDPQLFDFLWEIQQYFSVP-EYIYILSGYRTQETNKMLSRRNRK---------IARKSQHVLGKAVDFYI 162 (200) Q Consensus 100 ~~~mDp~lld~L~~i~~~~g~~-~Pi~I~SGYRsp~~N~~lr~~~~G---------~Ak~S~H~~G~A~Di~i 162 (200) ...|+|.+.+.+..+.+.+-.. -.+.|+|||||.+.-..|-..+.. -...|.|..|.|+||.. T Consensus 18 ~~~l~~~~~~~~~~~~~~a~~~G~~l~i~~gyRs~~~Q~~l~~~g~~~~g~~~~~a~pg~S~H~~G~AiDi~~ 90 (148) T d2vo9a1 18 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCL 90 (148) T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEE T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCC T ss_conf 2434999999999999999974983888741369999999999624457873144798778677755545510 No 3 >d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]} Probab=96.96 E-value=0.0032 Score=37.03 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=65.2 Q ss_pred CCCCCCCCHHHHHHHHHH----HHHH-CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH-- Q ss_conf 798536788999999999----9980-998878995136885676898621788876673111289989828999999-- Q gi|254780961|r 97 SKQSIDMDPQLFDFLWEI----QQYF-SVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS-- 169 (200) Q Consensus 97 ~~~~~~mDp~lld~L~~i----~~~~-g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~-- 169 (200) ++.-.-|..+.-+.|..+ .+.+ |. -+.|+-||.... -.++.|+|-.|+|+||...+.+..+ T Consensus 53 tgadR~Mt~Rck~kLn~LA~~Vmn~w~gv--kLrV~eaWde~~----------~h~~~SLHyEGRAvdittsd~d~sk~~ 120 (148) T d3d1ma1 53 TGADRLMTQRCKDKLNALAISVMNQWPGV--KLRVTEGWDEDG----------HHSEESLHYEGRAVDITTSDRDRSKYG 120 (148) T ss_dssp SSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEESSCCSC----------CSCTTCGGGGTCEEEEEETTCCGGGHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCCC----------CCCCCCCCCCCEEEEEEECCCCHHHHH T ss_conf 77403563999999999999999857880--688775133688----------768654344553678883579878999 Q ss_pred -HHHHHHHCCCCEEEEE-CCEEEEECC Q ss_conf -9999996399847873-884688669 Q gi|254780961|r 170 -LYKIAIRLKRGGVGYY-SKFLHIDVG 194 (200) Q Consensus 170 -l~~~a~~~~~gGvG~Y-s~FVHiD~g 194 (200) |++.|...++.=|-|- +++||+-+. T Consensus 121 ~Larlav~AGFDWV~Yesr~hIh~SVk 147 (148) T d3d1ma1 121 MLARLAVEAGFDWVYYESKAHIHCSVK 147 (148) T ss_dssp HHHHHHHHTTCSEEEEEETTEEEEECC T ss_pred HHHHHHHHCCCCEEEECCCCEEEEEEC T ss_conf 999999871898798626745998840 No 4 >d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]} Probab=84.18 E-value=1.2 Score=21.42 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=44.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHH-HHHHHH-----------------------CCCCCCCCCCCC Q ss_conf 8536788999999999998099-887899513688567-689862-----------------------178887667311 Q gi|254780961|r 99 QSIDMDPQLFDFLWEIQQYFSV-PEYIYILSGYRTQET-NKMLSR-----------------------RNRKIARKSQHV 153 (200) Q Consensus 99 ~~~~mDp~lld~L~~i~~~~g~-~~Pi~I~SGYRsp~~-N~~lr~-----------------------~~~G~Ak~S~H~ 153 (200) ...-.-+...+.|..+|+.+-. .--+.|--+||+.+- ..+... .+.-.|..|.|. T Consensus 38 ~~c~Lr~~~a~~L~~aq~~L~~~G~~L~I~DayRP~~aq~~~~~~~~~~~~~~~~~~~~p~~~k~~~~~~~y~a~~s~Hs 117 (202) T d1r44a_ 38 NRIVGTYELAESLLKAKELAATQGYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSSHS 117 (202) T ss_dssp SSCEEEHHHHHHHHHHHHHTTSSSEEEEEEECCCCHHHHHHHHHHHTSCCCCSSHHHHCSSSCTTHHHHTSSSCSSCGGG T ss_pred CHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCC T ss_conf 22647999999999999988726976999865799999999998644777330344318750123321466767898978 Q ss_pred EEEEEEEECC Q ss_conf 1289989828 Q gi|254780961|r 154 LGKAVDFYIP 163 (200) Q Consensus 154 ~G~A~Di~i~ 163 (200) .|.|+|+.+- T Consensus 118 ~G~AVDLTL~ 127 (202) T d1r44a_ 118 RGSAIDLTLY 127 (202) T ss_dssp GTCEEEEEEE T ss_pred CEEEEEEEEE T ss_conf 7058998988 No 5 >d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]} Probab=40.75 E-value=9.5 Score=16.01 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=29.4 Q ss_pred CCCCCCCCHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCCCCEEEEEEC-CCCEEC Q ss_conf 1210012212332100000110100589832899981898847999980-398348 Q gi|254780961|r 27 TSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFK-RGSQYN 81 (200) Q Consensus 27 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~R~L~l~n~~TgE~~~~~y~-~~g~y~ 81 (200) +-..|+.+-|++..... ...+.-+++++|+|||..+..++- .+|+.. T Consensus 110 aVgpfAie~GLv~~~~~--------~~~~~t~VrI~n~NT~~~i~a~v~~~~G~~~ 157 (182) T d2h9fa1 110 GAGAFALHAGLVDPARI--------PEDGICEVRIWQANIGKTIIAHVPVSGGQVQ 157 (182) T ss_dssp HHHHHHHHTTCSCGGGC--------CSSEEEEEEEEETTTTEEEEEEEEEETTEEC T ss_pred CCCCHHHHCCCCCCCCC--------CCCCEEEEEEEECCCCCEEEEEEECCCCEEE T ss_conf 25512423575134446--------8898499999975899879999963898372 No 6 >d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Probab=23.77 E-value=20 Score=14.11 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=34.1 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC--C------CCCCCCCCCEEE Q ss_conf 8899999999999809988789951368856768986217--8------887667311128 Q gi|254780961|r 104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRN--R------KIARKSQHVLGK 156 (200) Q Consensus 104 Dp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~--~------G~Ak~S~H~~G~ 156 (200) |...+.-....-+.+|.+-.++|.|+.|+|+.=....+.. . .+|-.|-|+-|. T Consensus 13 D~~~~~~a~~~L~~~gI~~e~~v~SAHRtp~~l~~~~~~~~~~~~~ViIa~AG~aa~Lpgv 73 (163) T d1qcza_ 13 DWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGM 73 (163) T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEECSSCCHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCH T ss_conf 4999999999999839976999842204889999999999974976999852688765204 No 7 >d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C {Haemophilus ducreyi [TaxId: 730]} Probab=22.78 E-value=5.1 Score=17.66 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=30.8 Q ss_pred EEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCC Q ss_conf 89998189884799998039834899999998872654279853 Q gi|254780961|r 58 TLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSI 101 (200) Q Consensus 58 ~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~ 101 (200) .++++|+.||.-+. +-+|+...+.+.||+++|.-.++.. T Consensus 15 ~vsiRsl~tG~~l~-----~~~~~~~~~~~~nW~l~ei~~~~~~ 53 (154) T d1sr4c_ 15 RISLRSLLTAQPVK-----NDHYDSHNYLSTHWELIDYKGKEYE 53 (154) T ss_dssp EEEEEETTTCCBCC-----CSSSCTTSGGGGCEEEEECCCCTTC T ss_pred EEEEEECCCCCEEE-----CCCCCCCCCCCCCEEEEEEECCHHH T ss_conf 79987424475032-----2455756711088089985175675 No 8 >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=19.05 E-value=25 Score=13.51 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=41.4 Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHC Q ss_conf 99999999998099887899513688567689862178887667311128998982899999999999963 Q gi|254780961|r 107 LFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRL 177 (200) Q Consensus 107 lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~ 177 (200) =++++..+++..+...||.+.|+|-.+..-.... ..| |.|+....++..+|......+ T Consensus 66 G~el~~~ir~~~~~~~piI~lT~~~~~~~~~~~~--~~G-----------~~~~l~KP~~~~~L~~~l~~~ 123 (128) T d2r25b1 66 GLLSTKMIRRDLGYTSPIVALTAFADDSNIKECL--ESG-----------MNGFLSKPIKRPKLKTILTEF 123 (128) T ss_dssp HHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHH--HTT-----------CSEEEESSCCHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH--HCC-----------CCEEEECCCCHHHHHHHHHHH T ss_conf 8999999997068998099997779999999999--869-----------989998989999999999999 No 9 >d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Probab=16.43 E-value=28 Score=13.14 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=34.4 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC--C------CCCCCCCCCEEE Q ss_conf 8899999999999809988789951368856768986217--8------887667311128 Q gi|254780961|r 104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRN--R------KIARKSQHVLGK 156 (200) Q Consensus 104 Dp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~--~------G~Ak~S~H~~G~ 156 (200) |...++-....-+.||..-.+.|.|+.|+|+.=....+.. . .+|-.|-|+-|. T Consensus 13 D~~~~~~a~~~L~~~gi~~~~~v~SAHrtp~rl~~~~~~~~~~~~~viIa~AG~aa~Lpgv 73 (155) T d1xmpa_ 13 DWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM 73 (155) T ss_dssp GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHH T ss_conf 6999999999999919908999841204968898899999860514887541467776257 No 10 >d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Probab=13.92 E-value=33 Score=12.74 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=28.5 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 88999999999998099887899513688567689862 Q gi|254780961|r 104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSR 141 (200) Q Consensus 104 Dp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~ 141 (200) |...+.-...+-+.+|.+-.+.|.|+.|+|+.=....+ T Consensus 14 D~~v~~~a~~~L~~~gI~~e~~v~SAHR~p~~l~~~~~ 51 (159) T d1u11a_ 14 DWETMRHADALLTELEIPHETLIVSAHRTPDRLADYAR 51 (159) T ss_dssp GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEHHHHCHHHHHHHHH T ss_conf 59999999999999099559987468648688999999 Done!