RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62] (200 letters) >1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus G} SCOP: a.20.1.1 d.65.1.1 Length = 213 Score = 69.5 bits (169), Expect = 4e-13 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%) Query: 122 EYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRL---K 178 + I + G+R+ N + A S+H+ G A D +L + A + Sbjct: 129 KPITVNGGFRSVTCNSNVGG-----ASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTE 183 Query: 179 RGGVGYY--SKFLHIDVGRVRSWT 200 G GY + H+ G R W+ Sbjct: 184 ILGPGYPGHNDHTHVAGGDGRFWS 207 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.0 bits (114), Expect = 1e-06 Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 84/202 (41%) Query: 15 IGLYVSVASFFVTSPIYSLSP-DLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTG-SKAIV 72 IG+ + +A + VT+ + +P +L +S + +TG S+ +V Sbjct: 241 IGV-IQLAHYVVTAKLLGFTPGEL-----RSYLKG----------------ATGHSQGLV 278 Query: 73 T--FKRGSQYNQEGLSQLNRLLYDW-----HSKQSIDMDPQLFDFL-WEIQQYF---SVP 121 T + W +++I + LF F+ + + S+P Sbjct: 279 TAVAIAETD--------------SWESFFVSVRKAITV---LF-FIGVRCYEAYPNTSLP 320 Query: 122 EYIYILSGYRTQETNK------MLSRRNRKIARKSQHVLGKAVDFYIP-----GVSL--- 167 S N MLS N + +V + ++P +SL Sbjct: 321 P-----SILEDSLENNEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEISLVNG 373 Query: 168 ----------RSLYKIAIRLKR 179 +SLY + + L++ Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRK 395 >1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A Length = 179 Score = 31.2 bits (70), Expect = 0.16 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 9/49 (18%) Query: 123 YIYILSGYRTQETNKMLSRRNRKIAR---------KSQHVLGKAVDFYI 162 Y+ + GYR+ L + R +S H G AVD + Sbjct: 54 YLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCL 102 >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Length = 342 Score = 28.1 bits (62), Expect = 1.4 Identities = 17/157 (10%), Positives = 43/157 (27%), Gaps = 14/157 (8%) Query: 54 EEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWE 113 K + + G + L + I + + + L E Sbjct: 128 NPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEE 187 Query: 114 IQQYFSVPEYIYILSGYRTQETNKMLSRRN------------RKIARKSQHVLGKAVDFY 161 + + +P +Y+ ET ++ + + + Sbjct: 188 MIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDLPTRTVVRLT--L 245 Query: 162 IPGVSLRSLYKIAIRLKRGGVGYYSKFLHIDVGRVRS 198 + G ++ S K A + + + ++ VG R+ Sbjct: 246 VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRN 282 >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Score = 26.2 bits (57), Expect = 5.1 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 31/122 (25%) Query: 26 VTSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGL 85 T+ + + P L + + LLD V+ I ++ T ++ Sbjct: 618 TTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILI------------- 664 Query: 86 SQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRK 145 +H +Q W Y P+Y + + +R Sbjct: 665 ---------YHGEQ---------IAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRF 706 Query: 146 IA 147 Sbjct: 707 PL 708 >2x0q_A ALCC, alcaligin biosynthesis protein; adenylation, siderophores, iron ACQU biosynthetic protein; HET: ATP; 1.96A {Bordetella bronchiseptica} PDB: 2x0o_A* 2x0p_A* Length = 618 Score = 25.8 bits (56), Expect = 7.4 Identities = 6/26 (23%), Positives = 14/26 (53%) Query: 146 IARKSQHVLGKAVDFYIPGVSLRSLY 171 +A++ LG + Y+ S+R+ + Sbjct: 264 VAQRKIVCLGYGEEQYLAQQSIRTFF 289 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.137 0.403 Gapped Lambda K H 0.267 0.0439 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,736,230 Number of extensions: 75403 Number of successful extensions: 201 Number of sequences better than 10.0: 1 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 14 Length of query: 200 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 112 Effective length of database: 3,559,758 Effective search space: 398692896 Effective search space used: 398692896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 54 (25.3 bits)