RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780961|ref|YP_003065374.1| hypothetical protein
CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear
           receptor; 1.80A {Streptomyces albus G} SCOP: a.20.1.1
           d.65.1.1
          Length = 213

 Score = 69.5 bits (169), Expect = 4e-13
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 122 EYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRL---K 178
           + I +  G+R+   N  +       A  S+H+ G A D         +L + A      +
Sbjct: 129 KPITVNGGFRSVTCNSNVGG-----ASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTE 183

Query: 179 RGGVGYY--SKFLHIDVGRVRSWT 200
             G GY   +   H+  G  R W+
Sbjct: 184 ILGPGYPGHNDHTHVAGGDGRFWS 207


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 84/202 (41%)

Query: 15  IGLYVSVASFFVTSPIYSLSP-DLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTG-SKAIV 72
           IG+ + +A + VT+ +   +P +L     +S +                  +TG S+ +V
Sbjct: 241 IGV-IQLAHYVVTAKLLGFTPGEL-----RSYLKG----------------ATGHSQGLV 278

Query: 73  T--FKRGSQYNQEGLSQLNRLLYDW-----HSKQSIDMDPQLFDFL-WEIQQYF---SVP 121
           T      +                W       +++I +   LF F+     + +   S+P
Sbjct: 279 TAVAIAETD--------------SWESFFVSVRKAITV---LF-FIGVRCYEAYPNTSLP 320

Query: 122 EYIYILSGYRTQETNK------MLSRRNRKIARKSQHVLGKAVDFYIP-----GVSL--- 167
                 S       N       MLS  N    +   +V     + ++P      +SL   
Sbjct: 321 P-----SILEDSLENNEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEISLVNG 373

Query: 168 ----------RSLYKIAIRLKR 179
                     +SLY + + L++
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRK 395


>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A
           {Bacteriophage A500} PDB: 2vo9_A
          Length = 179

 Score = 31.2 bits (70), Expect = 0.16
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 9/49 (18%)

Query: 123 YIYILSGYRTQETNKMLSRRNRKIAR---------KSQHVLGKAVDFYI 162
           Y+ +  GYR+      L  + R             +S H  G AVD  +
Sbjct: 54  YLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCL 102


>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal
           binding protein, structural genomics, NPPSFA; 2.21A
           {Pyrococcus horikoshii}
          Length = 342

 Score = 28.1 bits (62), Expect = 1.4
 Identities = 17/157 (10%), Positives = 43/157 (27%), Gaps = 14/157 (8%)

Query: 54  EEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWE 113
                 K +  +           G       +  L    +       I  +  + + L E
Sbjct: 128 NPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEE 187

Query: 114 IQQYFSVPEYIYILSGYRTQETNKMLSRRN------------RKIARKSQHVLGKAVDFY 161
           + +   +P  +Y+       ET   ++                 +       + +     
Sbjct: 188 MIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDLPTRTVVRLT--L 245

Query: 162 IPGVSLRSLYKIAIRLKRGGVGYYSKFLHIDVGRVRS 198
           + G ++ S  K A  + +    +     ++ VG  R+
Sbjct: 246 VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRN 282


>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
           barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
           {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
           c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
          Length = 768

 Score = 26.2 bits (57), Expect = 5.1
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 31/122 (25%)

Query: 26  VTSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGL 85
            T+ +  + P L  +  +      LLD   V+   I ++ T    ++             
Sbjct: 618 TTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILI------------- 664

Query: 86  SQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRK 145
                    +H +Q            W    Y   P+Y    +     +        +R 
Sbjct: 665 ---------YHGEQ---------IAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRF 706

Query: 146 IA 147
             
Sbjct: 707 PL 708


>2x0q_A ALCC, alcaligin biosynthesis protein; adenylation, siderophores,
           iron ACQU biosynthetic protein; HET: ATP; 1.96A
           {Bordetella bronchiseptica} PDB: 2x0o_A* 2x0p_A*
          Length = 618

 Score = 25.8 bits (56), Expect = 7.4
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 146 IARKSQHVLGKAVDFYIPGVSLRSLY 171
           +A++    LG   + Y+   S+R+ +
Sbjct: 264 VAQRKIVCLGYGEEQYLAQQSIRTFF 289


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,736,230
Number of extensions: 75403
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 14
Length of query: 200
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 112
Effective length of database: 3,559,758
Effective search space: 398692896
Effective search space used: 398692896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.3 bits)