RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780961|ref|YP_003065374.1| hypothetical protein
CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal
           catalytic domain {Streptomyces albus G [TaxId: 1962]}
          Length = 130

 Score = 82.4 bits (203), Expect = 3e-17
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 14/125 (11%)

Query: 85  LSQLNRLLYDWHSKQSIDMDPQL--FDFLWEIQQYFSV--PEYIYILSGYRTQETNKMLS 140
            ++LNR   DW   +      +      +W++Q        + I +  G+R+   N  + 
Sbjct: 5   YAELNRCNSDWSGGKVSAATARANALVTMWKLQAMRHAMGDKPITVNGGFRSVTCNSNVG 64

Query: 141 RRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLK---RGGVGYY--SKFLHIDVGR 195
                    S+H+ G A D         +L + A         G GY   +   H+  G 
Sbjct: 65  GA-----SNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEILGPGYPGHNDHTHVAGGD 119

Query: 196 VRSWT 200
            R W+
Sbjct: 120 GRFWS 124


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 30.8 bits (69), Expect = 0.081
 Identities = 9/58 (15%), Positives = 20/58 (34%)

Query: 104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFY 161
              +++ + EI +       +++ S Y  Q    +L   N             A++ Y
Sbjct: 83  STAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLY 140


>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 114

 Score = 27.5 bits (61), Expect = 0.70
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 67  GSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPEYIYI 126
            ++ +V        +   L +L   L  +      D D        + ++ F   E++YI
Sbjct: 23  LNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYI 82

Query: 127 LSGYR------TQETNKMLSRRNRKIARKS 150
              YR           ++L R    +  +S
Sbjct: 83  DRAYREVAAAPIWHLAQVLLRARFDVRIES 112


>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
           (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
          Length = 458

 Score = 26.5 bits (58), Expect = 1.7
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 92  LYDWHSKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQ 151
           L  +      +   Q   FL  +++Y  +P+ +Y    Y T  + K  S    K+ R+  
Sbjct: 135 LVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYGDLPYSTTASRKWNSLLTTKL-REFA 193

Query: 152 HVLGKAVD 159
             L  A+ 
Sbjct: 194 ETLRTALK 201


>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage
           Mu [TaxId: 10677]}
          Length = 94

 Score = 25.5 bits (56), Expect = 3.5
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 12/99 (12%)

Query: 83  EGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRR 142
             L++LN LL    S+  +D      + +  I ++      +YI  G            R
Sbjct: 4   ALLAELNDLLRGELSRLGVD-PAHSLEIVVAICKHLG-GGQVYIPRGQALD-----SLIR 56

Query: 143 NRKIARKSQHVLGKAVDFYIP--GVSLRSLYKIAIRLKR 179
           + +I        G+ V       GV+  ++YK   R++R
Sbjct: 57  DLRIWNDFN---GRNVSELTTRYGVTFNTVYKAIRRMRR 92


>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina
           thermophila [TaxId: 2210]}
          Length = 197

 Score = 25.0 bits (54), Expect = 4.6
 Identities = 6/37 (16%), Positives = 12/37 (32%)

Query: 95  WHSKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYR 131
             +   I  D      +      +++P  +Y   G R
Sbjct: 139 PGTPMVIVFDTAFHQTMPPYAYMYALPYDLYEKHGVR 175


>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 197

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 6/31 (19%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 91  LLYDWHSKQSIDMDPQ--LFDFLWEIQQYFS 119
           L++D+ +    ++ PQ   + +L  +  ++S
Sbjct: 9   LVFDYEAAWIYEVQPQGAEWSYLGLVYLFYS 39


>d1ciya2 b.77.2.1 (A:256-461) delta-Endotoxin (insectocide), middle
           domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
          Length = 206

 Score = 24.2 bits (52), Expect = 8.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 105 PQLFDFLWEIQQYFSVPEYIYILSGYR 131
           P L D L  I  Y  V       SG++
Sbjct: 39  PHLMDILNSITIYTDVHRGFNYWSGHQ 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 750,731
Number of extensions: 33128
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 13
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)