BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780961|ref|YP_003065374.1| hypothetical protein
CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62]
(200 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 200
Score = 406 bits (1043), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MKKTEIFRILKVIWIGLYVSVASFFVTSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLK 60
MKKTEIFRILKVIWIGLYVSVASFFVTSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLK
Sbjct: 1 MKKTEIFRILKVIWIGLYVSVASFFVTSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLK 60
Query: 61 IYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSV 120
IYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSV
Sbjct: 61 IYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSV 120
Query: 121 PEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLKRG 180
PEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLKRG
Sbjct: 121 PEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLKRG 180
Query: 181 GVGYYSKFLHIDVGRVRSWT 200
GVGYYSKFLHIDVGRVRSWT
Sbjct: 181 GVGYYSKFLHIDVGRVRSWT 200
>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 25.8 bits (55), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 139 LSRRNRKIARKSQHVLGKAVDFYIP 163
L N+++ S H L KAVD +IP
Sbjct: 174 LQGTNKELGEDSIHALMKAVDTHIP 198
>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 25.8 bits (55), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 139 LSRRNRKIARKSQHVLGKAVDFYIP 163
L N+++ S H L KAVD +IP
Sbjct: 174 LQGTNKELGEDSIHALMKAVDTHIP 198
>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 864
Score = 25.8 bits (55), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 81 NQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPE---YIYILSGYRTQETNK 137
N + S N++L DW + +++ + +WE+ +Y E + ++G R+
Sbjct: 336 NDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGAS 395
Query: 138 MLSR 141
ML +
Sbjct: 396 MLGQ 399
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 23.5 bits (49), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 114 IQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIAR 148
+Q+Y S+ + I IL E +K++ R RK+ R
Sbjct: 383 LQRYKSLQDIIAILGMDELSEEDKLVVARARKLER 417
>gi|254781227|ref|YP_003065640.1| hypothetical protein CLIBASIA_05670 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 68
Score = 23.1 bits (48), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 45 SMSSDLLDQEEVRTLKIYVVSTGSKAI 71
S++ + D+E++R K +V+S +KAI
Sbjct: 41 SVAGETTDEEKLREYKEFVISAFAKAI 67
>gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 431
Score = 22.7 bits (47), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 53 QEEVRTLKIYVVSTGSKAIVTFKRGSQYN 81
+ E++TL VS G KA + F+ N
Sbjct: 127 ESELKTLNQRAVSLGKKAPIAFRVNPDIN 155
>gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 398
Score = 21.6 bits (44), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 14 WIGLYVS--VASFFVTSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAI 71
WIG++V V + F+T Y P+ LD +VR L +Y + I
Sbjct: 157 WIGIFVCMGVITTFITLWYYIRFPET-------------LDPRDVRPLNLYAILHSFSLI 203
Query: 72 VTFKRGSQYNQEGLSQLNRLLYDWHSKQSI 101
+ + YN + +L +S Q I
Sbjct: 204 FKHRASTLYNIANSLTMGAILGFVNSSQQI 233
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,160
Number of Sequences: 1233
Number of extensions: 4534
Number of successful extensions: 13
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 200
length of database: 328,796
effective HSP length: 70
effective length of query: 130
effective length of database: 242,486
effective search space: 31523180
effective search space used: 31523180
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 36 (18.5 bits)