RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780962|ref|YP_003065375.1| hypothetical protein
CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 24.0 bits (51), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 6/37 (16%)

Query: 2   AIKNSGAEFVLIDAKSDGYKHLGFKKPIFKNNIMENM 38
           AI   G E   ID+KS+      F   I   NI+  M
Sbjct: 574 AIPEQGIELEHIDSKSE------FAHRIMLTNILRMM 604


>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex,
           transcription factor, C-REL homodimer, transcription/DNA
           complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
          Length = 275

 Score = 23.9 bits (51), Expect = 8.4
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 15  AKSDGYKHLG--FKKPIFKNNIMENMIGRMSLRR 46
           +++D ++ +   F+ P F  +I E +  +M LRR
Sbjct: 225 SQADVHRQVAIVFRTPPFLRDITEPITVKMQLRR 258


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 425,422
Number of extensions: 13076
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 49
Length of database: 5,693,230
Length adjustment: 22
Effective length of query: 27
Effective length of database: 5,159,862
Effective search space: 139316274
Effective search space used: 139316274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)