RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780962|ref|YP_003065375.1| hypothetical protein CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62] (49 letters) >d2j8ga2 c.1.8.8 (A:2-190) N-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]} Length = 189 Score = 22.8 bits (48), Expect = 7.8 Identities = 4/33 (12%), Positives = 10/33 (30%), Gaps = 4/33 (12%) Query: 2 AIKNSGAEFVLIDAKSDGYKHLGFKKPIFKNNI 34 ++ G +I S+ + P + Sbjct: 21 ILEQMGTTNTIIKI-SES---TTYLNPCLSAQV 49 >d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 278 Score = 22.5 bits (48), Expect = 9.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Query: 2 AIKNSGAEFVLIDAKS 17 A+K S AE+++ID KS Sbjct: 230 AVKLSEAEYIIIDEKS 245 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.139 0.396 Gapped Lambda K H 0.267 0.0518 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 181,787 Number of extensions: 5614 Number of successful extensions: 17 Number of sequences better than 10.0: 1 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 2 Length of query: 49 Length of database: 2,407,596 Length adjustment: 21 Effective length of query: 28 Effective length of database: 2,119,266 Effective search space: 59339448 Effective search space used: 59339448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.4 bits)